The data in this directory is the intersection snp_mQTL pairs of GAW16 and the mQTL data obtained GoDMC database

This document describes the column headings of the result file

GAW16 data section:
SNP = The rsid of the variant
Chromo = The chromosome that the variant is located on
Position = The base pair location of the variant
X.genotype = Percentage of genotype X
min_genotype_freq = Minimum allele frequency
p_h.w = Hardy-Weinberg test p-value
Armitage_P = P-value for trend test
OR = The odds ratio
X95.OR_CI1 = The lower bound of the 95% confidence interval for the OR
X95.OR_CI2 = The upper limit of the 95% confidence interval for the OR

mQTL data section:
cpg=450k cpg
type = The type of the variant
beta_a1 = Regression coefficient of allele 1 from fixed effects meta analysis
se = Standard error fixed effects meta analysis
pval = Pvalue fixed effects meta analysis
samplesize = Samplesize used in fixed effects meta analysis
allele1 = Effect allele
allele2 = Non effect allele
freq_a1 = Effect allele frequency
freq_se = Standard error allele frequency
cistrans = cis=TRUE, Cis = Distance between SNP-CpG <1 MB
num_studies = Number of studies used in fixed effects meta analysis
direction = Direction for each of 36 cohorts
hetisq = I2 
hetchisq = Heterogeneity Chi square
hetpval = Heterogeneity pvalue 
tausq = Tau square
beta_are_a1 = Regression coefficient of allele 1 from additive random effects meta analysis
se_are = Standard error additive random effects meta analysis
pval_are = Pvalue random effects meta analysis
se_mre = Standard error multiplicative random effects meta analysis; Effect sizes MRE are the same as in beta_a1 column
pval_mre = Pvalue multiplicative random effects meta analysis
chunk = meta analysis chunks
clumped = TRUE means index SNV