The data in this directory is the intersection eQTL_gene pairs of GCST002318 and the eQTLs data obtained from 49 tissues in GTEx V8

This document describes the column headings of the result file

GWAS data section:
chr_pos = Chromosome_base pair position for the variant
SNPID = The rsid of the variant
A1.x = The effect allele of the variant in GWAS data
A2.x = The non-effect allele in GWAS data
OR.A1. = The odds ratio of the effect allele of the variant/trait association
P.val = The p-value of the variant/trait association
OR_95.CIup.OR_95.CIlow = The upper/lower range of the odds ratio confidence interval
beta = The beta of the variant/trait association
se = The standard error of the beta
zscore = The effect size of the variation on the trait

GTEx data section:
A1.y = The effect allele of the variant in GTEx data
A2.y = The non-effect allele in GTEx data
version = version of the data build
gene_id = GENCODE/Ensembl gene ID
tss_distance = distance between variant and transcription start site. Positive when variant is downstream of the TSS, negative otherwise
ma_samples = number of samples carrying the minor allele
ma_count = total number of minor alleles across individuals
maf = minor allele frequency observed in the set of donors for a given tissue
pval_nominal = nominal p-value
slope = regression slope
slope_se = standard error of the regression slope
pval_nominal_threshold = nominal p-value threshold for calling a variant-gene pair significant for the gene
min_pval_nominal = smallest nominal p-value for the gene
pval_beta = beta-approximated permutation p-value for the gene