The data in this directory is the intersection snp_mQTL pairs of GCST005569 and the mQTL data obtained GoDMC database

This document describes the column headings of the result file

GWAS data section:
chr_pos = Chromosome_base pair position for the variant
rsid = The rsid of the variant
other_allele = The non-effect allele in GWAS data
effect_allele = The effect allele of the variant in GWAS data
p = The p-value of the variant/trait association
beta = The beta of the variant/trait association
se = The standard error of the beta
OR = The odds ratio of the variant/trait association
OR_lower = The lower range of the odds ratio confidence interval
OR_upper = The upper range of the odds ratio confidence interval
zscore = The effect size of the variation on the trait

mQTL data section:
cpg=450k cpg
type = The type of the variant
beta_a1 = Regression coefficient of allele 1 from fixed effects meta analysis
se = Standard error fixed effects meta analysis
pval = Pvalue fixed effects meta analysis
samplesize = Samplesize used in fixed effects meta analysis
allele1 = Effect allele
allele2 = Non effect allele
freq_a1 = Effect allele frequency
freq_se = Standard error allele frequency
cistrans = cis=TRUE, Cis = Distance between SNP-CpG <1 MB
num_studies = Number of studies used in fixed effects meta analysis
direction = Direction for each of 36 cohorts
hetisq = I2 
hetchisq = Heterogeneity Chi square
hetpval = Heterogeneity pvalue 
tausq = Tau square
beta_are_a1 = Regression coefficient of allele 1 from additive random effects meta analysis
se_are = Standard error additive random effects meta analysis
pval_are = Pvalue random effects meta analysis
se_mre = Standard error multiplicative random effects meta analysis; Effect sizes MRE are the same as in beta_a1 column
pval_mre = Pvalue multiplicative random effects meta analysis
chunk = meta analysis chunks
clumped = TRUE means index SNV