The data in this directory is the intersection eQTL_gene pairs of GCST90044540 and the eQTLs data obtained from 49 tissues in GTEx V8

This document describes the column headings of the result file

GWAS data section:
chr_pos = Chromosome_base pair position for the variant
variant_id = The rsid of the variant
effect_allele = The effect allele of the variant in GWAS data
other_allele = The non-effect allele in GWAS data
N = per allele sample size
effect_allele_frequency = Frequency of the effect allele in the control population
T = GLMM score statistic
SE_T = standard error of the score statistic
P_noSPA = raw p-value
beta = SNP effect or log(odds ratio)
standard_error = standard error for the estimated effect size after the SPA correction
p_value = p-value after the SPA correction
CONVERGE = to indicate whether the SPA correction is converged for the variant

GTEx data section:
A1 = The effect allele of the variant in GTEx data
A2 = The non-effect allele in GTEx data
version = version of the data build
gene_id = GENCODE/Ensembl gene ID
tss_distance = distance between variant and transcription start site. Positive when variant is downstream of the TSS, negative otherwise
ma_samples = number of samples carrying the minor allele
ma_count = total number of minor alleles across individuals
maf = minor allele frequency observed in the set of donors for a given tissue
pval_nominal = nominal p-value
slope = regression slope
slope_se = standard error of the regression slope
pval_nominal_threshold = nominal p-value threshold for calling a variant-gene pair significant for the gene
min_pval_nominal = smallest nominal p-value for the gene
pval_beta = beta-approximated permutation p-value for the gene