The data in this directory is the intersection eQTL_gene pairs of WTCCC and the eQTLs data obtained from 49 tissues in GTEx V8

This document describes the column headings of the result file

WTCCC data section:
SNP = The rsid of the variant
Chromo = The chromosome that the variant is located on
Position = The base pair location of the variant
X.genotype = Percentage of genotype X
min_genotype_freq = Minimum allele frequency
p_h.w = Hardy-Weinberg test p-value
Armitage_P = P-value for trend test
OR = The odds ratio
X95.OR_CI1 = The lower bound of the 95% confidence interval for the OR
X95.OR_CI2 = The upper limit of the 95% confidence interval for the OR

GTEx data section:
A1 = The effect allele of the variant in GTEx data
A2 = The non-effect allele in GTEx data
version = version of the data build
gene_id = GENCODE/Ensembl gene ID
tss_distance = distance between variant and transcription start site. Positive when variant is downstream of the TSS, negative otherwise
ma_samples = number of samples carrying the minor allele
ma_count = total number of minor alleles across individuals
maf = minor allele frequency observed in the set of donors for a given tissue
pval_nominal = nominal p-value
slope = regression slope
slope_se = standard error of the regression slope
pval_nominal_threshold = nominal p-value threshold for calling a variant-gene pair significant for the gene
min_pval_nominal = smallest nominal p-value for the gene
pval_beta = beta-approximated permutation p-value for the gene