DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_121121848 rs369304377 ENSG00000270231.3 NBPF8 685495 1.6e-07 0.376 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000223345.3 H2BP1 4591 8.85e-09 0.577 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.87e-07 0.527 4e-20 breast cancer 1_155446537 rs10796944 ENSG00000225855.6 RUSC1-AS1 124850 5.96e-05 0.286 7e-10 breast cancer 1_155697170 rs348196 ENSG00000225855.6 RUSC1-AS1 375483 3.45e-05 0.298 2e-08 breast cancer 1_91555907 rs12134245 ENSG00000097046.12 CDC7 55014 1.1e-07 -0.309 4e-06 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 5.11e-10 -0.684 9e-10 breast cancer 11_111765903 rs643506 ENSG00000137713.15 PPP2R1B -524 1.05e-07 -0.357 2e-07 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 1.6e-16 0.717 1e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 1.6e-16 0.717 3e-12 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 1.57e-06 -0.412 2e-06 breast cancer 15_74843920 rs6938 ENSG00000178802.17 MPI -46085 6.39e-06 0.288 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 4.38e-08 0.32 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 4.38e-08 0.32 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 4.38e-08 0.32 4e-07 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 1.77e-18 0.436 1e-07 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 9.41e-12 0.519 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.15e-06 0.293 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.15e-06 0.292855 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.15e-06 0.293 4e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 2.23e-16 1.1 2e-08 breast cancer 17_45394123 rs4763 ENSG00000262500.1 MAPK8IP1P1 -849483 1.56e-16 1.06 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 5.67e-17 0.696 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 1.56e-20 -1.05 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 1.78e-15 0.957 2e-08 breast cancer 17_45394123 rs4763 ENSG00000176681.14 LRRC37A -898610 1.95e-07 0.692 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264589.2 MAPT-AS1 -501507 6.17e-05 -0.321 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 1.2e-12 0.913 2e-08 breast cancer 17_45394123 rs4763 ENSG00000120088.14 CRHR1 -390157 2.35e-05 -0.265 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 2.04e-09 0.719 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 1.51e-32 1.17 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000262500.1 MAPK8IP1P1 -302484 2.21e-25 1.14 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 6.5e-27 1.08 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 3.7e-29 0.775 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 1.4e-09 0.659 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 1.03e-23 1.16 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 4.83e-20 1.02 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 2.55e-44 -1.21 8e-12 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 4.26e-08 0.672 5e-08 breast cancer 17_46751565 rs199533 ENSG00000262500.1 MAPK8IP1P1 507959 5.78e-28 1.19 5e-08 breast cancer 17_46751565 rs199533 ENSG00000264589.2 MAPT-AS1 855935 4.48e-05 -0.303 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 1.67e-29 1.15 5e-08 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 3.96e-09 0.651 5e-08 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 1.21e-37 1.2 5e-08 breast cancer 17_46788237 rs199498 ENSG00000262500.1 MAPK8IP1P1 544631 7.15e-19 1.01 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 1.08e-22 1.01 2e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 3.38e-06 0.569 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 3.03e-21 1.01 2e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 3.26e-08 0.606 2e-08 breast cancer 17_68904663 rs36059695 ENSG00000141338.13 ABCA8 -50729 3.65e-08 0.831 6e-08 breast cancer 18_26920652 rs232320 ENSG00000260372.6 AQP4-AS1 264910 1.54e-05 -0.33 6e-09 breast cancer 19_43779080 rs1685191 ENSG00000176222.8 ZNF404 -104971 1.5e-05 -0.328 4e-20 breast cancer 19_43779080 rs1685191 ENSG00000104783.11 KCNN4 -2177 4.37e-10 -0.433 4e-20 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000104783.11 KCNN4 1104 1.13e-07 -0.388 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 9.29e-09 -0.437 2e-10 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 5.6e-14 -0.529 2e-14 breast cancer 19_51869723 rs10411161 ENSG00000161551.14 ZNF577 -18253 2.09e-05 -0.46 7e-06 breast cancer 19_51942133 rs8113308 ENSG00000269235.1 ZNF350-AS1 -7001 5.17e-08 0.667 6e-07 breast cancer 2_201258707 rs3769821 ENSG00000155749.12 FLACC1 -98691 1.96e-06 -0.303 4e-18 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 7.24e-06 -0.311 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000064012.21 CASP8 45762 2.84e-06 -0.333 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 4.54e-08 -0.336 3e-09 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 4.04e-06 -0.319 5e-16 breast cancer 2_201288502 rs700635 ENSG00000064012.21 CASP8 55059 2.05e-06 -0.337 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 1.27e-06 -0.342 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.04e-05 -0.29 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 1.27e-06 -0.342 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.04e-05 -0.29 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 1.27e-06 -0.342 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.04e-05 -0.29 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 1.27e-06 -0.342 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.04e-05 -0.29 6e-24 breast cancer 2_69900097 rs6716937 ENSG00000124380.10 SNRNP27 6537 5.77e-10 -0.377 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 6.32e-12 -0.909 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 6.32e-12 -0.909 4e-07 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 2.74e-08 0.398 9e-06 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 5.18e-09 -0.664 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 4.17e-05 -0.324 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 5.18e-09 -0.664 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 4.17e-05 -0.324 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 5.18e-09 -0.664 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 4.17e-05 -0.324 1e-08 breast cancer 5_132497907 rs736801 ENSG00000197536.11 IRF1-AS1 87271 4.28e-05 0.329 8e-08 breast cancer 5_132497907 rs736801 ENSG00000233006.6 MIR3936HG 128259 1.01e-05 0.526 8e-08 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 1.68e-08 0.419 2e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 2.58e-13 0.585 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 4.56e-19 -0.552 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 3.22e-14 0.814 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 8.28e-14 -0.804 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 1.66e-19 0.558 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 4.59e-15 -0.618 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9.63e-17 -0.662 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 3.41e-20 0.579 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 6.19e-13 -0.8 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9.63e-17 -0.662 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 3.41e-20 0.579 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 6.19e-13 -0.8 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9.63e-17 -0.662 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 3.41e-20 0.579 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 6.19e-13 -0.8 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9.63e-17 -0.662 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 3.41e-20 0.579 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 6.19e-13 -0.8 2e-12 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 5.19e-16 -0.505 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 1.38e-16 0.631 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 7.09e-07 0.555 2e-06 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 5.97e-06 -0.936 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 7.82e-07 -1.01 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 4.99e-09 -1.05 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 8.08e-10 -0.996 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 8.08e-10 -0.996 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 8.08e-10 -0.996 2e-09 breast cancer 6_27873148 rs45509595 ENSG00000219392.1 ZNF602P -242480 0.000108505 -0.483 5e-09 breast cancer 6_28106103 rs34662244 ENSG00000219392.1 ZNF602P -9525 7.97e-05 -0.486 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000137185.11 ZSCAN9 -118783 0.000115841 0.362 3e-09 breast cancer 6_28364364 rs13214023 ENSG00000219392.1 ZNF602P 248736 7.97e-05 -0.486 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000137185.11 ZSCAN9 139478 0.000115841 0.362 1e-09 breast cancer 6_29785031 rs147680653 ENSG00000137312.14 FLOT1 -957702 1.57e-05 0.305 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000137312.14 FLOT1 -859790 1.57e-05 0.305 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000137312.14 FLOT1 -739550 1.57e-05 0.305 7e-07 breast cancer 6_30365728 rs3094054 ENSG00000137312.14 FLOT1 -377005 1.61e-05 0.303 1e-07 breast cancer 6_30473526 rs3132615 ENSG00000137312.14 FLOT1 -269207 1.61e-05 0.303 2e-06 breast cancer 6_30682249 rs9262142 ENSG00000137312.14 FLOT1 -60484 1.61e-05 0.303 3e-06 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 3.59e-07 -0.68 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 3.59e-07 -0.68 9e-06 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 1.57e-06 -0.551 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 1.57e-06 -0.551 6e-08 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 3.65e-20 -0.674 9e-13 breast cancer 7_100437651 rs117911427 ENSG00000242294.6 STAG3L5P 101239 3.21e-05 0.911 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000085514.15 PILRA 64206 3.28e-05 1.07 7e-06 breast cancer 7_102478605 rs369574511 ENSG00000005075.15 POLR2J -302 7.49e-06 0.202 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 2.48e-05 -0.229 2e-07 breast cancer 7_144351809 rs62485509 ENSG00000050327.14 ARHGEF5 -3479 4.97e-08 0.702 4e-12 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 1e-08 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 4e-10 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 2e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 1e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 7e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 4.2e-11 0.693 7e-12 breast cancer 7_144477198 rs13230714 ENSG00000050327.14 ARHGEF5 121910 2.88e-06 0.498 1e-06 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 2.31e-05 0.618 5e-06 breast cancer 8_17926905 rs11779988 ENSG00000078674.17 PCM1 4065 1.73e-11 -0.427 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 2.96e-20 -0.638 2e-07 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 2.96e-20 -0.638 3e-08 breast cancer 9_133463535 rs3124765 ENSG00000148290.9 SURF1 106859 5.24e-08 0.5 2e-06