DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_121121848 rs369304377 ENSG00000270231.3 NBPF8 685495 2.82e-05 0.42052 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000223345.3 H2BP1 4591 3.54e-11 0.836936 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.05e-06 0.658541 7e-10 breast cancer 1_155697170 rs348196 ENSG00000163348.3 PYGO2 735422 2.49e-05 0.357784 2e-08 breast cancer 1_16013277 rs1763604 ENSG00000186510.11 CLCNKA -5598 3.2e-11 -0.827933 7e-09 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 1.18e-05 -0.296782 2e-08 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 1.18e-05 -0.296782 9e-10 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 8.57e-07 -0.316712 1e-08 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 8.57e-07 -0.316712 3e-12 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 1.86e-08 -0.56294 9e-10 breast cancer 11_111765903 rs643506 ENSG00000137713.15 PPP2R1B -524 2.16e-05 -0.406483 2e-07 breast cancer 14_67599772 rs7149859 ENSG00000100564.8 PIGH -515 2.7e-05 -0.311691 7e-07 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 3.94e-06 -0.390351 2e-06 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 4.35e-08 0.448584 1e-07 breast cancer 17_45394123 rs4763 ENSG00000262500.1 MAPK8IP1P1 -849483 3.33e-08 1.0489 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 2.41e-14 -1.21043 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 1.39e-06 0.865743 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 5.81e-07 0.93464 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 1.93e-12 0.959548 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 3.34e-08 0.850728 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 6.72e-25 1.04561 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000262500.1 MAPK8IP1P1 -302484 6.1e-14 1.13786 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 4.35e-09 0.93016 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 3.9e-27 -1.27324 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 3.75e-19 1.19298 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 2.16e-12 1.00427 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 2.2e-10 0.972893 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 1.81e-16 0.983898 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264589.2 MAPT-AS1 45492 2.3e-05 -0.646118 8e-12 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 8.27e-17 1.04289 5e-08 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 1.97e-07 0.884462 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 1.15e-17 1.22077 5e-08 breast cancer 17_46751565 rs199533 ENSG00000262500.1 MAPK8IP1P1 507959 9.63e-14 1.19029 5e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 6.77e-10 0.846441 2e-08 breast cancer 17_46788237 rs199498 ENSG00000262500.1 MAPK8IP1P1 544631 3.36e-12 1.14588 2e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 3.28e-05 0.733472 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 5.11e-09 0.931278 2e-08 breast cancer 17_55135212 rs2628317 ENSG00000141198.14 TOM1L1 235825 3.28e-06 -0.4843 4e-16 breast cancer 17_68904663 rs36059695 ENSG00000141338.13 ABCA8 -50729 1.16e-05 1.30199 6e-08 breast cancer 19_43779080 rs1685191 ENSG00000104783.11 KCNN4 -2177 2.83e-07 -0.604222 4e-20 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 4.07e-10 -0.618904 2e-14 breast cancer 19_51942133 rs8113308 ENSG00000269235.1 ZNF350-AS1 -7001 5.52e-06 0.654396 6e-07 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 4.15e-06 -0.552143 3e-09 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 4.98e-07 -0.57401 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 4.98e-07 -0.57401 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 4.98e-07 -0.57401 3e-07 breast cancer 5_132497907 rs736801 ENSG00000233006.6 MIR3936HG 128259 7.16e-06 0.508342 8e-08 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 1.13e-09 0.837099 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 5.49e-14 -0.585573 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 1.11e-11 0.646561 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 5.63e-09 -0.789369 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 9.53e-14 0.56833 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 2.21e-12 -0.647896 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.27e-12 -0.665942 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.41e-09 -0.830189 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.71e-15 0.596409 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.27e-12 -0.665942 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.41e-09 -0.830189 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.71e-15 0.596409 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.27e-12 -0.665942 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.41e-09 -0.830189 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.71e-15 0.596409 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.27e-12 -0.665942 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.41e-09 -0.830189 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.71e-15 0.596409 1e-12 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 4.46e-13 -0.521244 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 5.15e-06 0.598827 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 1.33e-10 0.566551 2e-06 breast cancer 6_151615542 rs6929137 ENSG00000120262.9 CCDC170 121512 7.98e-06 0.395149 2e-13 breast cancer 6_151621059 rs3757322 ENSG00000120262.9 CCDC170 127029 1.33e-06 0.426974 3e-12 breast cancer 6_151621059 rs3757322 ENSG00000120262.9 CCDC170 127029 1.33e-06 0.426974 3e-31 breast cancer 6_151621059 rs3757322 ENSG00000120262.9 CCDC170 127029 1.33e-06 0.426974 6e-09 breast cancer 6_151621059 rs3757322 ENSG00000120262.9 CCDC170 127029 1.33e-06 0.426974 3e-41 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 5e-16 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 6e-24 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 3e-74 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 7e-15 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 1e-09 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 2e-15 breast cancer 6_151627231 rs2046210 ENSG00000120262.9 CCDC170 133201 4.15e-06 0.395756 5e-09 breast cancer 6_151628177 rs7763637 ENSG00000120262.9 CCDC170 134147 2.65e-06 0.407141 5e-13 breast cancer 6_151628447 rs6557160 ENSG00000120262.9 CCDC170 134417 2.65e-06 0.407141 6e-17 breast cancer 6_151628671 rs6913578 ENSG00000120262.9 CCDC170 134641 1.14e-05 0.38943 2e-30 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 7.41e-18 -0.696528 9e-13 breast cancer 7_144351809 rs62485509 ENSG00000050327.14 ARHGEF5 -3479 1.36e-08 0.805569 4e-12 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 2e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 7e-12 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 7e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 4e-10 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 1e-11 breast cancer 7_144377836 rs720475 ENSG00000050327.14 ARHGEF5 22548 2.25e-10 0.757027 1e-08 breast cancer 7_144477198 rs13230714 ENSG00000050327.14 ARHGEF5 121910 1.01e-06 0.562958 1e-06 breast cancer 8_17926905 rs11779988 ENSG00000078674.17 PCM1 4065 1.58e-09 -0.397033 2e-06 breast cancer 9_103912867 rs718857 ENSG00000136824.18 SMC2 -181393 5.63e-08 -0.415814 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 3.47e-13 -0.562972 2e-07 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 3.47e-13 -0.562972 3e-08