DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_100414772 rs612683 ENSG00000079335.18 CDC14A 63038 4.94e-05 -0.139485 3e-07 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.8e-05 0.366452 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 7.29e-10 0.250335 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.8e-05 0.366452 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 7.29e-10 0.250335 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.8e-05 0.366452 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 7.29e-10 0.250335 3e-08 breast cancer 1_113903258 rs7513707 ENSG00000118655.4 DCLRE1B -1944 9.6e-05 -0.16524 2e-11 breast cancer 1_113905767 rs11552449 ENSG00000118655.4 DCLRE1B 565 0.000157402 -0.161627 6e-07 breast cancer 1_113905767 rs11552449 ENSG00000118655.4 DCLRE1B 565 0.000157402 -0.161627 2e-08 breast cancer 1_113905767 rs11552449 ENSG00000118655.4 DCLRE1B 565 0.000157402 -0.161627 5e-11 breast cancer 1_113905767 rs11552449 ENSG00000118655.4 DCLRE1B 565 0.000157402 -0.161627 1e-09 breast cancer 1_113905767 rs11552449 ENSG00000118655.4 DCLRE1B 565 0.000157402 -0.161627 3e-09 breast cancer 1_117687599 rs7529522 ENSG00000183508.4 TENT5C 81665 7.77e-07 -0.228067 5e-10 breast cancer 1_117687599 rs7529522 ENSG00000183508.4 TENT5C 81665 7.77e-07 -0.228067 2e-10 breast cancer 1_118488075 rs10923574 ENSG00000231365.5 WARS2-AS1 -652384 1.45e-05 0.193935 4e-07 breast cancer 1_119942712 rs6697258 ENSG00000270231.3 NBPF8 -493641 1.09e-05 0.479748 2e-15 breast cancer 1_119942712 rs6697258 ENSG00000270392.2 PFN1P2 -491340 1.29e-08 0.621491 2e-15 breast cancer 1_121121848 rs369304377 ENSG00000171943.11 SRGAP2C -62962 5.69e-10 -0.202788 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000223345.3 H2BP1 4591 4.34e-29 0.6491 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000213244.3 H3P4 3238 5.14e-05 0.242891 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000275131.2 PDE4DIPP2 420559 0.00014702 -0.0787182 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000270231.3 NBPF8 685495 4.07e-36 0.67737 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000273136.6 NBPF26 397925 3.07e-16 0.482214 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000270392.2 PFN1P2 687796 6.74e-34 0.665765 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.52e-14 0.453804 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000275131.2 PDE4DIPP2 837526 7.1e-05 -0.081965 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 1.55e-21 0.561902 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 9.79e-10 -0.199249 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000231752.5 EMBP1 19703 5.86e-05 -0.22317 8e-54 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 2.8e-16 0.335319 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 2.8e-16 0.335319 5e-09 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 2.8e-16 0.335319 2e-07 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 2.8e-16 0.335319 8e-09 breast cancer 1_149934520 rs11205303 ENSG00000014914.20 MTMR11 -2347 0.000123402 -0.0855724 1e-14 breast cancer 1_149934520 rs11205303 ENSG00000014914.20 MTMR11 -2347 0.000123402 -0.0855724 5e-07 breast cancer 1_155176305 rs4971059 ENSG00000185499.16 MUC1 -16611 5.48e-09 0.228732 2e-10 breast cancer 1_155176305 rs4971059 ENSG00000169242.11 EFNA1 48845 6.32e-05 -0.134019 2e-10 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 4.96e-13 -0.256424 2e-10 breast cancer 1_155176305 rs4971059 ENSG00000185499.16 MUC1 -16611 5.48e-09 0.228732 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000169242.11 EFNA1 48845 6.32e-05 -0.134019 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 4.96e-13 -0.256424 5e-11 breast cancer 1_155212052 rs2974935 ENSG00000169231.13 THBS3 4071 4.92e-10 0.127623 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000177628.15 GBA -32647 8.61e-07 -0.119635 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000160766.14 GBAP1 -15370 7.3e-37 -0.362774 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000185499.16 MUC1 19136 7.3e-06 0.152745 2e-07 breast cancer 1_155212373 rs2075570 ENSG00000185499.16 MUC1 19457 6.91e-06 0.153497 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000160766.14 GBAP1 -15049 6.82e-37 -0.363762 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000169231.13 THBS3 4392 5.73e-10 0.127457 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000177628.15 GBA -32326 6.95e-07 -0.120903 5e-06 breast cancer 1_155216951 rs1057941 ENSG00000185499.16 MUC1 24035 2.81e-11 0.237423 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000169231.13 THBS3 8970 0.000158574 0.0836553 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000177628.15 GBA -27748 0.000123668 -0.0998203 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000160766.14 GBAP1 -10471 5.05e-21 -0.298824 2e-07 breast cancer 1_155302483 rs7524950 ENSG00000160766.14 GBAP1 75061 1.11e-14 -0.264413 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000225855.6 RUSC1-AS1 -19204 1.26e-07 0.12705 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000185499.16 MUC1 109567 3.04e-07 0.195582 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000177628.15 GBA 57784 1.61e-08 -0.153862 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000169231.13 THBS3 94502 1.09e-05 0.102801 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000160767.20 FAM189B 47000 7.56e-08 0.154013 3e-09 breast cancer 1_155446537 rs10796944 ENSG00000143622.10 RIT1 -464867 9.26e-05 -0.154495 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000225855.6 RUSC1-AS1 124850 2.15e-05 0.113089 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000177628.15 GBA 201838 1.83e-05 -0.129473 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000185499.16 MUC1 253621 2.74e-05 0.177169 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000160766.14 GBAP1 219115 1.72e-11 -0.25561 7e-10 breast cancer 1_155587180 rs12091730 ENSG00000185499.16 MUC1 394264 1.08e-05 0.187119 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000160766.14 GBAP1 359758 6.18e-12 -0.26291 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000143622.10 RIT1 -324224 0.000216335 -0.147483 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000177628.15 GBA 342481 1.28e-05 -0.132821 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000225855.6 RUSC1-AS1 265493 3.97e-05 0.110296 2e-10 breast cancer 1_155697170 rs348196 ENSG00000143622.10 RIT1 -214234 0.000122174 -0.144487 2e-08 breast cancer 1_155697170 rs348196 ENSG00000225855.6 RUSC1-AS1 375483 9.11e-06 0.112236 2e-08 breast cancer 1_155697170 rs348196 ENSG00000160766.14 GBAP1 469748 1.59e-08 -0.205962 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 2.5e-16 0.293353 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 2.5e-16 0.293353 2e-08 breast cancer 1_16013277 rs1763604 ENSG00000186510.11 CLCNKA -5598 4.77e-15 -0.282734 7e-09 breast cancer 1_16013277 rs1763604 ENSG00000173641.17 HSPB7 -6317 1.11e-12 0.14834 7e-09 breast cancer 1_168127440 rs60504827 ENSG00000143158.10 MPC2 190400 8.27e-09 -0.171769 2e-07 breast cancer 1_201468704 rs35383942 ENSG00000224536.2 CSRP1-AS1 -38709 1.52e-08 0.60985 6e-07 breast cancer 1_201468704 rs35383942 ENSG00000223396.2 RPS10P7 -49999 7.76e-07 0.622666 6e-07 breast cancer 1_201468704 rs35383942 ENSG00000224536.2 CSRP1-AS1 -38709 1.52e-08 0.60985 4e-13 breast cancer 1_201468704 rs35383942 ENSG00000223396.2 RPS10P7 -49999 7.76e-07 0.622666 4e-13 breast cancer 1_203832121 rs59867004 ENSG00000182004.12 SNRPE -29482 4.43e-07 0.125481 1e-10 breast cancer 1_207903511 rs2724379 ENSG00000284237.1 LINC02767 -55781 3.08e-30 -0.502155 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000132763.14 MMACHC 418389 1.29e-06 0.147321 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000159588.14 CCDC17 294412 6.66e-07 -0.162799 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000117450.13 PRDX1 395422 0.000119733 -0.0746404 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000086015.20 MAST2 131482 7.37e-12 -0.228497 2e-07 breast cancer 1_46135245 rs1707302 ENSG00000171357.5 LURAP1 -68089 0.000189224 -0.176792 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000086015.20 MAST2 348258 1.05e-14 0.256817 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 4.22e-07 0.193399 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000280670.2 CCDC163 635193 9.17e-06 -0.290793 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 2.33e-06 0.155434 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000171357.5 LURAP1 -68089 0.000189224 -0.176792 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000086015.20 MAST2 348258 1.05e-14 0.256817 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 4.22e-07 0.193399 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000280670.2 CCDC163 635193 9.17e-06 -0.290793 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 2.33e-06 0.155434 3e-10 breast cancer 1_8035440 rs225132 ENSG00000116288.12 PARK7 81149 2.94e-14 0.154163 3e-06 breast cancer 1_91555907 rs12134245 ENSG00000097046.12 CDC7 55014 2.2e-08 -0.176462 4e-06 breast cancer 10_102125800 rs10883710 ENSG00000269609.5 C10orf95-AS1 -324017 0.000207551 0.13669 3e-06 breast cancer 10_102125800 rs10883710 ENSG00000171206.13 TRIM8 -518696 0.000321163 0.11038 3e-06 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 9.21e-15 -0.410461 9e-10 breast cancer 10_21522558 rs11012730 ENSG00000204682.5 MIR1915HG 25296 7.22e-05 0.155248 3e-10 breast cancer 10_27080233 rs7918232 ENSG00000238021.6 ODAD2P1 -178529 2.81e-05 -0.312666 8e-06 breast cancer 10_27080233 rs7918232 ENSG00000120539.14 MASTL -75034 2.61e-19 0.501535 8e-06 breast cancer 10_5752689 rs55910451 ENSG00000057608.16 GDI2 -89443 1.92e-23 -0.202534 4e-07 breast cancer 10_62540572 rs78053936 ENSG00000165476.13 REEP3 -980791 3.52e-05 0.27461 2e-08 breast cancer 10_92172529 rs72807246 ENSG00000228701.1 TNKS2-DT 374238 2.79e-10 0.590533 3e-06 breast cancer 11_10299114 rs4345958 ENSG00000254554.1 ADM-DT -4590 0.000130266 0.248696 3e-06 breast cancer 11_111636465 rs505372 ENSG00000204381.11 LAYN 96185 9.83e-06 0.175946 3e-06 breast cancer 11_111636465 rs505372 ENSG00000149300.9 C11orf52 -281567 1.26e-05 0.165379 3e-06 breast cancer 11_111765903 rs643506 ENSG00000137713.15 PPP2R1B -524 1.44e-11 -0.316477 2e-07 breast cancer 11_120362917 rs7924772 ENSG00000181264.8 TLCD5 37788 1.17e-08 0.164055 4e-08 breast cancer 11_18642694 rs10832963 ENSG00000179119.14 SPTY2D1 7903 1.3e-07 -0.186405 9e-06 breast cancer 11_1871355 rs4980389 ENSG00000232987.1 LINC01219 -119741 2.36e-07 0.298754 4e-07 breast cancer 11_1871355 rs4980389 ENSG00000226416.1 MRPL23-AS1 -118565 1.75e-05 0.238747 4e-07 breast cancer 11_1874478 rs4980386 ENSG00000226416.1 MRPL23-AS1 -115442 1.15e-05 0.241009 9e-17 breast cancer 11_1874478 rs4980386 ENSG00000232987.1 LINC01219 -116618 1.12e-07 0.302971 9e-17 breast cancer 11_1877434 rs1973765 ENSG00000232987.1 LINC01219 -113662 2.04e-07 0.291311 1e-37 breast cancer 11_1877434 rs1973765 ENSG00000226416.1 MRPL23-AS1 -112486 1.06e-05 0.237442 1e-37 breast cancer 11_1880867 rs4980383 ENSG00000232987.1 LINC01219 -110229 1e-05 -0.26818 9e-09 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 7.44e-06 -0.260202 9e-09 breast cancer 11_1880867 rs4980383 ENSG00000232987.1 LINC01219 -110229 1e-05 -0.26818 3e-06 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 7.44e-06 -0.260202 3e-06 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 1e-10 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 1e-10 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 1.02e-10 -0.403395 2e-11 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 1.59e-08 -0.339477 2e-11 breast cancer 11_1892909 rs576603 ENSG00000226416.1 MRPL23-AS1 -97011 1.43e-07 0.287876 2e-08 breast cancer 11_1892909 rs576603 ENSG00000232987.1 LINC01219 -98187 8.15e-10 0.349083 2e-08 breast cancer 11_1920716 rs909116 ENSG00000232987.1 LINC01219 -70380 3.62e-05 0.241878 7e-07 breast cancer 11_47325389 rs11039183 ENSG00000110514.19 MADD 56228 2.6e-05 -0.144436 6e-06 breast cancer 11_62126500 rs7937840 ENSG00000149503.12 INCENP 2527 1.69e-05 -0.145179 1e-06 breast cancer 11_62126500 rs7937840 ENSG00000149503.12 INCENP 2527 1.69e-05 -0.145179 2e-09 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 1.34e-23 -0.490548 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.88e-09 0.29923 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000171219.8 CDC42BPG 971026 0.000132928 0.165092 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 3.18e-06 0.0971237 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 4.87e-05 -0.0930774 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.04e-08 -0.11755 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172757.12 CFL1 -46351 0.000146773 0.0498187 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 1.34e-23 -0.490548 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.88e-09 0.29923 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000171219.8 CDC42BPG 971026 0.000132928 0.165092 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 3.18e-06 0.0971237 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 4.87e-05 -0.0930774 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.04e-08 -0.11755 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172757.12 CFL1 -46351 0.000146773 0.0498187 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 1.34e-23 -0.490548 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.88e-09 0.29923 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000171219.8 CDC42BPG 971026 0.000132928 0.165092 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 3.18e-06 0.0971237 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 4.87e-05 -0.0930774 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.04e-08 -0.11755 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172757.12 CFL1 -46351 0.000146773 0.0498187 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 1.34e-23 -0.490548 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.88e-09 0.29923 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000171219.8 CDC42BPG 971026 0.000132928 0.165092 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 3.18e-06 0.0971237 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 4.87e-05 -0.0930774 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.04e-08 -0.11755 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172757.12 CFL1 -46351 0.000146773 0.0498187 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 1.34e-23 -0.490548 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.88e-09 0.29923 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000171219.8 CDC42BPG 971026 0.000132928 0.165092 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 3.18e-06 0.0971237 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 4.87e-05 -0.0930774 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.04e-08 -0.11755 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172757.12 CFL1 -46351 0.000146773 0.0498187 3e-07 breast cancer 11_65935052 rs617791 ENSG00000172803.17 SNX32 101411 3.89e-17 -0.44596 7e-06 breast cancer 11_65935052 rs617791 ENSG00000087365.15 SF3B2 -115677 4.64e-06 0.121095 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172757.12 CFL1 73106 0.000157842 0.0526765 7e-06 breast cancer 11_65935052 rs617791 ENSG00000175376.8 EIF1AD -67026 2.83e-13 -0.173734 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172543.7 CTSW 55243 4.99e-05 0.221453 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172638.12 EFEMP2 61460 1.3e-06 -0.106213 7e-06 breast cancer 11_65935052 rs617791 ENSG00000173327.7 MAP3K11 320803 4.4e-06 0.139381 7e-06 breast cancer 11_65935052 rs617791 ENSG00000175334.7 BANF1 -67125 4.15e-12 0.151013 7e-06 breast cancer 11_66301747 rs1783730 ENSG00000174684.6 B4GAT1 -45945 3.47e-07 0.141598 3e-07 breast cancer 11_66301747 rs1783730 ENSG00000174576.9 NPAS4 -119257 1.47e-05 0.136903 3e-07 breast cancer 11_66324772 rs118151305 ENSG00000172932.14 ANKRD13D -963775 2.26e-05 0.158891 6e-09 breast cancer 11_66843174 rs7570 ENSG00000174080.10 CTSF 274333 6.33e-32 0.427072 8e-06 breast cancer 11_66843174 rs7570 ENSG00000248746.5 ACTN3 296779 3.57e-09 0.370598 8e-06 breast cancer 11_66843174 rs7570 ENSG00000173621.8 LRFN4 -13473 2.23e-10 -0.167223 8e-06 breast cancer 11_66843174 rs7570 ENSG00000174684.6 B4GAT1 495482 1.87e-06 -0.151514 8e-06 breast cancer 11_69138652 rs72932523 ENSG00000162341.16 TPCN2 89755 2.19e-13 0.381356 1e-09 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 3.37e-73 0.622433 1e-12 breast cancer 11_803017 rs6597981 ENSG00000184524.5 CEND1 12894 2.55e-08 0.185997 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 2.31e-07 0.120888 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177830.17 CHID1 -112041 0.000119503 -0.112672 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 1.32e-27 0.218745 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177697.17 CD151 -29867 3.48e-08 0.185347 1e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 3.37e-73 0.622433 3e-12 breast cancer 11_803017 rs6597981 ENSG00000184524.5 CEND1 12894 2.55e-08 0.185997 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 2.31e-07 0.120888 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177830.17 CHID1 -112041 0.000119503 -0.112672 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 1.32e-27 0.218745 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177697.17 CD151 -29867 3.48e-08 0.185347 3e-12 breast cancer 12_111621753 rs11065979 ENSG00000111275.12 ALDH2 -145134 1.25e-06 0.115123 5e-06 breast cancer 12_120997672 rs2464195 ENSG00000157837.15 SPPL3 93301 6.53e-06 -0.149435 3e-08 breast cancer 12_120997672 rs2464195 ENSG00000157895.11 C12orf43 -18830 5.31e-11 -0.265761 3e-08 breast cancer 12_24884534 rs10842422 ENSG00000060982.14 BCAT1 -64925 3.64e-11 0.203531 3e-06 breast cancer 12_95623181 rs67129489 ENSG00000136014.11 USP44 71691 7.28e-05 0.183804 9e-07 breast cancer 14_92637727 rs11627032 ENSG00000100599.15 RIN3 123953 2.19e-08 -0.244011 4e-09 breast cancer 14_92637727 rs11627032 ENSG00000100599.15 RIN3 123953 2.19e-08 -0.244011 2e-06 breast cancer 14_92637727 rs11627032 ENSG00000100599.15 RIN3 123953 2.19e-08 -0.244011 4e-11 breast cancer 14_92637727 rs11627032 ENSG00000100599.15 RIN3 123953 2.19e-08 -0.244011 1e-06 breast cancer 14_92637727 rs11627032 ENSG00000100599.15 RIN3 123953 2.19e-08 -0.244011 2e-10 breast cancer 15_49580388 rs8027730 ENSG00000166262.15 FAM227B -40543 1.62e-10 0.244788 3e-08 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 5.7e-26 -0.58262 2e-06 breast cancer 15_50402109 rs4774565 ENSG00000104064.16 GABPB1 47151 1.6e-09 -0.195392 2e-06 breast cancer 15_51321455 rs1004983 ENSG00000186417.13 GLDN -20174 5.11e-08 -0.246126 3e-06 breast cancer 15_71344902 rs8030394 ENSG00000140488.15 CELF6 -975227 6.95e-05 -0.312407 1e-08 breast cancer 15_74843920 rs6938 ENSG00000178802.17 MPI -46085 3.87e-07 0.170933 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 0.000108039 -0.137201 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 1.82e-06 0.158089 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 0.000108039 -0.137201 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 1.82e-06 0.158089 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 0.000108039 -0.137201 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 1.82e-06 0.158089 4e-07 breast cancer 15_75516399 rs8027365 ENSG00000169371.13 SNUPN -110070 3.16e-05 0.163373 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 2.06e-82 0.687526 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000140398.13 NEIL1 169237 1.89e-05 0.0897399 1e-07 breast cancer 15_77977130 rs12906542 ENSG00000260139.6 CSPG4P13 82446 2.1e-05 0.234691 7e-07 breast cancer 15_79777420 rs166870 ENSG00000136371.10 MTHFS -119959 4.37e-10 -0.396952 3e-07 breast cancer 15_90965985 rs77554484 ENSG00000258725.1 PRC1-AS1 -6875 1.3e-09 -0.429312 1e-15 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 2.2e-50 0.589951 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 1.34e-09 -0.34454 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.86e-20 0.319085 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000140553.17 UNC45A 34860 1.37e-05 0.11213 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 1.34e-09 -0.34454 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.86e-20 0.319085 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000140553.17 UNC45A 34860 1.37e-05 0.11213 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 1.34e-09 -0.34454 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.86e-20 0.319085 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000140553.17 UNC45A 34860 1.37e-05 0.11213 8e-10 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 2.39e-24 -0.443878 3e-10 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 2.39e-24 -0.443878 4e-08 breast cancer 16_56497273 rs2303282 ENSG00000125124.11 BBS2 -23010 1.87e-26 -0.478102 3e-07 breast cancer 16_71475893 rs8050871 ENSG00000040199.18 PHLPP2 -248808 5.26e-05 -0.124217 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000167377.17 ZNF23 12798 8.47e-26 -0.398148 3e-06 breast cancer 17_2195889 rs16952006 ENSG00000167720.12 SRR -107494 2.16e-14 -0.523371 3e-06 breast cancer 17_30689342 rs8081187 ENSG00000176390.11 CRLF3 -135434 6.77e-08 0.288859 2e-07 breast cancer 17_30884649 rs7223535 ENSG00000176390.11 CRLF3 59873 2.71e-09 0.19729 4e-10 breast cancer 17_30887862 rs113934718 ENSG00000176390.11 CRLF3 63086 1.74e-09 0.201163 1e-08 breast cancer 17_30894259 rs62070652 ENSG00000176390.11 CRLF3 69483 1.74e-09 0.201163 1e-06 breast cancer 17_30894259 rs62070652 ENSG00000176390.11 CRLF3 69483 1.74e-09 0.201163 6e-09 breast cancer 17_45394123 rs4763 ENSG00000120088.14 CRHR1 -390157 5.36e-07 0.33967 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 4.98e-50 1.05832 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 1.57e-70 -1.1764 2e-08 breast cancer 17_45394123 rs4763 ENSG00000225190.10 PLEKHM1 -96626 1.41e-10 0.17949 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 2.11e-50 1.13129 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 3.85e-80 1.14875 2e-08 breast cancer 17_45394123 rs4763 ENSG00000186868.15 MAPT -500259 9.45e-05 -0.199557 2e-08 breast cancer 17_45394123 rs4763 ENSG00000176681.14 LRRC37A -898610 3.17e-24 0.747551 2e-08 breast cancer 17_45394123 rs4763 ENSG00000262500.1 MAPK8IP1P1 -849483 5.6e-41 0.899641 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 1.47e-58 1.09254 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000232300.1 FAM215B -621673 7.34e-11 0.490976 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 7.12e-27 0.720353 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000186868.15 MAPT 46740 0.000108961 -0.181667 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 2.76e-80 1.02812 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 8.32e-65 1.13953 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000073969.18 NSF -649547 3.78e-06 -0.169682 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000108379.9 WNT3 -891936 4.03e-14 0.428089 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000225190.10 PLEKHM1 450373 6.34e-10 0.15914 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000262500.1 MAPK8IP1P1 -302484 2.99e-58 0.947468 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 1.4e-128 1.19822 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 6.26e-111 -1.23495 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 1.46e-86 1.14291 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000120088.14 CRHR1 156842 4.58e-10 0.384522 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 8.58e-74 1.11714 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 1.02e-15 0.560729 8e-12 breast cancer 17_46751565 rs199533 ENSG00000232300.1 FAM215B 188770 3.79e-12 0.519666 5e-08 breast cancer 17_46751565 rs199533 ENSG00000186868.15 MAPT 857183 4.65e-06 -0.2134 5e-08 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 5.27e-95 1.17 5e-08 breast cancer 17_46751565 rs199533 ENSG00000262500.1 MAPK8IP1P1 507959 8.51e-62 0.964309 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 1.86e-77 1.01275 5e-08 breast cancer 17_46751565 rs199533 ENSG00000073969.18 NSF 160896 2.59e-07 -0.187745 5e-08 breast cancer 17_46751565 rs199533 ENSG00000108379.9 WNT3 -81493 3.16e-15 0.44344 5e-08 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 5.31e-16 0.563765 5e-08 breast cancer 17_46751565 rs199533 ENSG00000120088.14 CRHR1 967285 6.62e-08 0.334003 5e-08 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 6.53e-25 0.692966 5e-08 breast cancer 17_46788237 rs199498 ENSG00000108379.9 WNT3 -44821 1.01e-18 0.485698 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 1.9e-55 0.890376 2e-08 breast cancer 17_46788237 rs199498 ENSG00000186868.15 MAPT 893855 0.000166194 -0.17396 2e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 4.95e-16 0.557102 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 5.12e-56 0.970886 2e-08 breast cancer 17_46788237 rs199498 ENSG00000232300.1 FAM215B 225442 2.52e-10 0.469702 2e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 7.37e-21 0.628807 2e-08 breast cancer 17_46788237 rs199498 ENSG00000262500.1 MAPK8IP1P1 544631 5.02e-40 0.804754 2e-08 breast cancer 17_50196930 rs2075555 ENSG00000108823.15 SGCA 30945 9.68e-13 -0.401231 8e-08 breast cancer 17_50196930 rs2075555 ENSG00000188662.6 H1-9P 15752 1.2e-09 -0.315653 8e-08 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 2.29e-05 -0.109679 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.92e-14 -0.319972 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 2.29e-05 -0.109679 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.92e-14 -0.319972 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 2.29e-05 -0.109679 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.92e-14 -0.319972 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 2.29e-05 -0.109679 8e-09 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.92e-14 -0.319972 8e-09 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 9.04e-11 -0.265047 6e-29 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 9.04e-11 -0.265047 2e-34 breast cancer 17_55135212 rs2628317 ENSG00000166263.13 STXBP4 166426 3.62e-12 -0.30581 4e-16 breast cancer 17_68904663 rs36059695 ENSG00000141338.13 ABCA8 -50729 7.66e-14 0.549893 6e-08 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.29e-07 -0.231264 1e-09 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.29e-07 -0.231264 4e-10 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.29e-07 -0.231264 5e-07 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.29e-07 -0.231264 6e-06 breast cancer 17_81041898 rs9913477 ENSG00000141577.13 CEP131 -181101 8.44e-05 0.25031 3e-07 breast cancer 17_81211408 rs9913021 ENSG00000141577.13 CEP131 -11591 4.23e-08 -0.129136 2e-06 breast cancer 17_82597601 rs62079673 ENSG00000141580.15 WDR45B -50952 6.33e-15 0.276469 1e-06 breast cancer 17_82946434 rs898097 ENSG00000141560.14 FN3KRP 229751 1.79e-13 -0.41911 2e-06 breast cancer 17_82946434 rs898097 ENSG00000141542.10 RAB40B 247706 5.82e-05 0.120878 2e-06 breast cancer 19_17099805 rs7249698 ENSG00000099331.13 MYO9B 24024 2.79e-07 -0.142916 4e-07 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 2e-06 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 2e-06 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 2e-06 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 9e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 9e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 9e-13 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 1e-12 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 1e-12 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 1e-12 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 7e-21 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 7e-21 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 7e-21 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 4e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 4e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 4e-13 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 9.92e-10 0.25894 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-10 -0.313577 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.24e-15 -0.306219 2e-09 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 2.07e-07 0.213181 2e-09 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.87e-05 0.128258 2e-09 breast cancer 19_17279482 rs4808075 ENSG00000130300.8 PLVAP -97868 3.22e-05 -0.179618 4e-07 breast cancer 19_17279482 rs4808075 ENSG00000130300.8 PLVAP -97868 3.22e-05 -0.179618 2e-09 breast cancer 19_17282085 rs8100241 ENSG00000130312.6 MRPL34 -10747 2.75e-06 0.144084 4e-08 breast cancer 19_17283116 rs56069439 ENSG00000130300.8 PLVAP -94234 4.23e-05 -0.17796 1e-32 breast cancer 19_17283116 rs56069439 ENSG00000130300.8 PLVAP -94234 4.23e-05 -0.17796 8e-19 breast cancer 19_17283116 rs56069439 ENSG00000130300.8 PLVAP -94234 4.23e-05 -0.17796 9e-09 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 2.86e-06 0.14331 2e-06 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 2.86e-06 0.14331 2e-08 breast cancer 19_18422832 rs7258465 ENSG00000175489.9 LRRC25 25215 4.21e-05 -0.0976881 3e-28 breast cancer 19_18422832 rs7258465 ENSG00000130511.15 SSBP4 3968 1.3e-14 -0.173247 3e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.14e-12 -0.160077 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.78e-05 -0.0978429 5e-15 breast cancer 19_18522945 rs172032 ENSG00000130511.15 SSBP4 104081 2.39e-06 -0.103135 1e-16 breast cancer 19_19417997 rs1469713 ENSG00000178093.13 TSSK6 -97688 6.88e-05 0.192661 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000250067.11 YJEFN3 -111367 9.8e-05 -0.0876897 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000213996.12 TM6SF2 144606 7.03e-05 -0.193621 1e-10 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 7.03e-05 -0.193621 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000178093.13 TSSK6 -80798 6.88e-05 0.192661 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 9.8e-05 -0.0876897 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 7.03e-05 -0.193621 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000178093.13 TSSK6 -80798 6.88e-05 0.192661 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 9.8e-05 -0.0876897 1e-11 breast cancer 19_19535463 rs2304098 ENSG00000178093.13 TSSK6 19778 6.52e-05 0.194482 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000250067.11 YJEFN3 6099 8.19e-05 -0.0891963 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000213996.12 TM6SF2 262072 9.33e-05 -0.191562 2e-11 breast cancer 19_2226677 rs3815308 ENSG00000104899.7 AMH -22632 1.69e-07 0.253086 7e-06 breast cancer 19_2226677 rs3815308 ENSG00000065000.15 AP3D1 62212 4.41e-05 0.0829254 7e-06 breast cancer 19_43484866 rs66849333 ENSG00000167378.8 IRGQ -111269 8.77e-06 0.240555 1e-06 breast cancer 19_43779080 rs1685191 ENSG00000176222.8 ZNF404 -104971 6.76e-11 -0.206278 4e-20 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.52e-17 -0.255743 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 8.22e-05 -0.165132 5e-08 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 8.56e-30 -0.339283 2e-14 breast cancer 19_43919418 rs375066 ENSG00000204920.10 ZNF155 -48444 6.3e-05 -0.171298 2e-14 breast cancer 19_51869723 rs10411161 ENSG00000198093.10 ZNF649 -35317 1.38e-07 -0.224274 7e-06 breast cancer 19_51869723 rs10411161 ENSG00000161551.14 ZNF577 -18253 6.31e-05 -0.170714 7e-06 breast cancer 19_51942133 rs8113308 ENSG00000197619.13 ZNF615 -66097 8.03e-05 -0.178903 6e-07 breast cancer 19_51942133 rs8113308 ENSG00000161551.14 ZNF577 54157 2.44e-07 -0.201272 6e-07 breast cancer 19_51942133 rs8113308 ENSG00000269235.1 ZNF350-AS1 -7001 1.43e-18 0.650054 6e-07 breast cancer 19_51942133 rs8113308 ENSG00000197608.11 ZNF841 -153632 2.68e-06 0.128347 6e-07 breast cancer 2_160772472 rs146071273 ENSG00000054219.10 LY75 867723 6.39e-05 0.375315 7e-06 breast cancer 2_171513371 rs11680449 ENSG00000071967.11 CYBRD1 -8876 1.62e-08 0.170892 4e-09 breast cancer 2_171568284 rs11675683 ENSG00000071967.11 CYBRD1 46037 1.66e-15 0.212864 4e-08 breast cancer 2_201003582 rs112257290 ENSG00000155749.12 FLACC1 -353816 4.45e-06 0.438957 2e-07 breast cancer 2_201258707 rs3769821 ENSG00000155749.12 FLACC1 -98691 2.66e-19 -0.41738 4e-18 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 7.25e-25 -0.499747 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000240344.8 PPIL3 389902 1.98e-07 -0.295005 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 7.38e-28 -0.507667 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000064012.21 CASP8 54912 2.34e-07 0.235655 3e-09 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 5.53e-25 -0.501056 5e-16 breast cancer 2_201288502 rs700635 ENSG00000240344.8 PPIL3 399199 1.26e-07 -0.299713 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 1.56e-07 -0.297398 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.34e-24 -0.493373 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 1.56e-07 -0.297398 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.34e-24 -0.493373 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 1.56e-07 -0.297398 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.34e-24 -0.493373 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 1.56e-07 -0.297398 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 3.34e-24 -0.493373 7e-07 breast cancer 2_201384985 rs2714486 ENSG00000155749.12 FLACC1 27587 1.72e-14 0.442184 7e-10 breast cancer 2_201384985 rs2714486 ENSG00000082146.12 STRADB -3017 0.000198423 0.180056 7e-10 breast cancer 2_201502866 rs77688320 ENSG00000082146.12 STRADB 114864 0.000179686 0.197065 3e-09 breast cancer 2_201502866 rs77688320 ENSG00000155749.12 FLACC1 145468 5.41e-13 0.454157 3e-09 breast cancer 2_24906604 rs6725517 ENSG00000224165.5 DNAJC27-AS1 -64786 4.77e-09 -0.209963 5e-11 breast cancer 2_24906604 rs6725517 ENSG00000224165.5 DNAJC27-AS1 -64786 4.77e-09 -0.209963 3e-12 breast cancer 2_25068670 rs1971136 ENSG00000224165.5 DNAJC27-AS1 97280 1.25e-06 0.175946 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 1.52e-16 0.29693 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 6.06e-06 -0.0857417 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 1.52e-16 0.29693 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 6.06e-06 -0.0857417 3e-06 breast cancer 2_28897867 rs4577244 ENSG00000171103.10 TRMT61B 27566 6.07e-16 0.290536 2e-09 breast cancer 2_28897867 rs4577244 ENSG00000213639.9 PPP1CB 146227 4.68e-06 -0.086479 2e-09 breast cancer 2_69164996 rs4602255 ENSG00000198380.12 GFPT1 -222258 0.000110721 0.107932 2e-09 breast cancer 2_69900097 rs6716937 ENSG00000124380.10 SNRNP27 6537 2.84e-07 -0.181532 4e-07 breast cancer 2_69945455 rs6756513 ENSG00000124380.10 SNRNP27 51895 8.26e-05 -0.154081 4e-07 breast cancer 20_34000289 rs2284378 ENSG00000101460.12 MAP1LC3A -546565 2.29e-09 0.167364 1e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 1.47e-09 0.168952 6e-06 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 1.47e-09 0.168952 2e-08 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 2.69e-08 0.152531 3e-09 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 2.69e-08 0.152531 3e-06 breast cancer 20_39051206 rs742276 ENSG00000101452.14 DHX35 88907 2.09e-13 -0.283404 9e-06 breast cancer 20_39051206 rs742276 ENSG00000101447.14 FAM83D 124894 3.38e-22 -0.458347 9e-06 breast cancer 20_5791630 rs73077323 ENSG00000171984.14 SHLD1 41237 2.39e-05 -0.287111 5e-06 breast cancer 21_46360308 rs9808759 ENSG00000215424.9 MCM3AP-AS1 131091 5.72e-05 0.32864 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.61e-14 -0.930576 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 6.55e-05 -0.496736 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000160299.16 PCNT 36186 4.55e-05 0.260605 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000215424.9 MCM3AP-AS1 131091 5.72e-05 0.32864 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.61e-14 -0.930576 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 6.55e-05 -0.496736 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000160299.16 PCNT 36186 4.55e-05 0.260605 6e-09 breast cancer 22_29273659 rs4820803 ENSG00000100263.13 RHBDD3 5681 1.6e-07 0.159609 2e-06 breast cancer 22_30027471 rs12537 ENSG00000184117.11 NIPSNAP1 446134 2.22e-05 -0.136574 9e-07 breast cancer 22_38172826 rs738321 ENSG00000184381.18 PLA2G6 -32864 2.21e-06 0.115262 7e-14 breast cancer 22_38172826 rs738321 ENSG00000198792.12 TMEM184B -100208 1.32e-08 -0.197427 7e-14 breast cancer 22_38172826 rs738321 ENSG00000184381.18 PLA2G6 -32864 2.21e-06 0.115262 1e-13 breast cancer 22_38172826 rs738321 ENSG00000198792.12 TMEM184B -100208 1.32e-08 -0.197427 1e-13 breast cancer 22_38174306 rs4820318 ENSG00000184381.18 PLA2G6 -31384 2.37e-06 0.11495 1e-13 breast cancer 22_38174306 rs4820318 ENSG00000198792.12 TMEM184B -98728 1.22e-08 -0.197946 1e-13 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.09e-17 -0.855202 4e-06 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.09e-17 -0.855202 3e-17 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.09e-17 -0.855202 9e-14 breast cancer 22_42745087 rs4820477 ENSG00000189306.10 RRP7A 225285 8.36e-05 0.214601 9e-07 breast cancer 22_42745087 rs4820477 ENSG00000128274.15 A4GALT 23789 1.92e-18 -0.250491 9e-07 breast cancer 3_100004736 rs9833888 ENSG00000114021.11 NIT2 -329965 6.84e-05 0.14027 3e-10 breast cancer 3_100004736 rs9833888 ENSG00000114021.11 NIT2 -329965 6.84e-05 0.14027 5e-10 breast cancer 3_100105841 rs9837602 ENSG00000114021.11 NIT2 -228860 3.37e-05 0.145841 1e-09 breast cancer 3_100149260 rs9289981 ENSG00000206535.7 LNP1 -252139 8.83e-05 0.16605 4e-10 breast cancer 3_156645453 rs2136690 ENSG00000240875.5 LINC00886 -171609 5.98e-16 -0.402313 4e-06 breast cancer 3_156645453 rs2136690 ENSG00000174912.7 METTL15P1 -69475 1.02e-05 -0.27601 4e-06 breast cancer 3_156645453 rs2136690 ENSG00000197980.12 LEKR1 -180028 7.34e-05 0.244577 4e-06 breast cancer 3_156927968 rs7637701 ENSG00000240875.5 LINC00886 110906 2.93e-37 -0.580286 1e-06 breast cancer 3_156927968 rs7637701 ENSG00000174912.7 METTL15P1 213040 1.68e-11 -0.401901 1e-06 breast cancer 3_16737360 rs1375631 ENSG00000131378.13 RFTN1 223334 0.000154703 -0.156704 7e-09 breast cancer 3_16737360 rs1375631 ENSG00000131378.13 RFTN1 223334 0.000154703 -0.156704 2e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 1.15e-05 0.342607 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 1.15e-05 0.342607 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 1.15e-05 0.342607 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 1.15e-05 0.342607 6e-15 breast cancer 3_46846708 rs56387622 ENSG00000261603.1 PRSS46P 110279 4.05e-06 0.333836 5e-19 breast cancer 3_46846708 rs56387622 ENSG00000188086.13 PRSS45P 101953 5.66e-08 0.413165 5e-19 breast cancer 3_49129027 rs61729152 ENSG00000068745.14 IP6K2 388674 0.000250969 0.362373 6e-06 breast cancer 3_49129027 rs61729152 ENSG00000172037.13 LAMB2 -4091 0.000346275 -0.332209 6e-06 breast cancer 3_49129027 rs61729152 ENSG00000164048.13 ZNF589 887927 0.000654528 0.541281 6e-06 breast cancer 4_103450498 rs10016947 ENSG00000164039.14 BDH2 350615 0.000165872 0.262785 9e-06 breast cancer 4_105435604 rs77928427 ENSG00000138777.19 PPA2 -38477 6.58e-10 -0.165605 3e-08 breast cancer 4_105435604 rs77928427 ENSG00000251586.1 TET2-AS1 257541 1.82e-08 0.303846 3e-08 breast cancer 4_38814717 rs6815814 ENSG00000174125.7 TLR1 9139 2.72e-11 -0.263016 6e-13 breast cancer 4_38814717 rs6815814 ENSG00000174125.7 TLR1 9139 2.72e-11 -0.263016 1e-11 breast cancer 4_57013626 rs4865169 ENSG00000084092.6 NOA1 34987 8.34e-08 0.111888 7e-06 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 1.25e-18 0.320282 9e-06 breast cancer 5_128227188 rs36715 ENSG00000245937.7 SLC12A2-DT 144016 1.37e-08 0.183978 4e-06 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 2.25e-10 -0.214061 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000072682.18 P4HA2 9528 1.75e-06 0.14869 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 2.25e-10 -0.214061 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000072682.18 P4HA2 9528 1.75e-06 0.14869 3e-08 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 9.06e-06 0.15792 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000164398.12 ACSL6 454012 0.000230329 0.158858 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 1.55e-07 -0.169368 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 2.66e-10 -0.218493 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 1.51e-07 -0.232754 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 9.06e-06 0.15792 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000164398.12 ACSL6 454012 0.000230329 0.158858 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 1.55e-07 -0.169368 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 2.66e-10 -0.218493 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 1.51e-07 -0.232754 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 9.06e-06 0.15792 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000164398.12 ACSL6 454012 0.000230329 0.158858 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 1.55e-07 -0.169368 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 2.66e-10 -0.218493 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 1.51e-07 -0.232754 1e-08 breast cancer 5_132497907 rs736801 ENSG00000233006.6 MIR3936HG 128259 5.03e-06 0.208227 8e-08 breast cancer 5_132497907 rs736801 ENSG00000072682.18 P4HA2 202592 3.78e-05 0.137241 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197375.12 SLC22A5 128155 2.95e-05 -0.152563 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197536.11 IRF1-AS1 87271 3.37e-10 0.222716 8e-08 breast cancer 5_1453229 rs2617583 ENSG00000142319.17 SLC6A3 7799 1.01e-06 -0.275304 9e-07 breast cancer 5_149053986 rs250677 ENSG00000169247.11 SH3TC2 -9177 5.04e-13 0.310994 8e-06 breast cancer 5_44662413 rs4415084 ENSG00000112996.10 MRPS30 -146512 3.02e-05 0.0949292 3e-09 breast cancer 5_44662413 rs4415084 ENSG00000112996.10 MRPS30 -146512 3.02e-05 0.0949292 8e-11 breast cancer 5_44663035 rs7701466 ENSG00000112996.10 MRPS30 -145890 1.96e-05 0.0968833 2e-10 breast cancer 5_44672840 rs55788307 ENSG00000112996.10 MRPS30 -136085 0.000210625 0.0874399 4e-14 breast cancer 5_44701316 rs714130 ENSG00000112996.10 MRPS30 -107609 0.000136116 0.0860197 7e-09 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 1e-30 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 5e-32 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 2e-37 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 8e-25 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 3e-26 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 3e-09 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 1e-80 breast cancer 5_44706396 rs10941679 ENSG00000112996.10 MRPS30 -102529 6.05e-05 0.104263 6e-73 breast cancer 5_44822356 rs930395 ENSG00000112996.10 MRPS30 13431 2.81e-05 0.109917 2e-58 breast cancer 5_44874903 rs7716600 ENSG00000112996.10 MRPS30 65978 4.6e-05 -0.107327 7e-07 breast cancer 5_44874903 rs7716600 ENSG00000112996.10 MRPS30 65978 4.6e-05 -0.107327 7e-08 breast cancer 5_44926416 rs10043344 ENSG00000112996.10 MRPS30 117491 0.000124776 -0.0870933 5e-10 breast cancer 5_45653810 rs2589161 ENSG00000164588.6 HCN1 -42688 0.000583824 0.156205 3e-08 breast cancer 5_50793817 rs26067 ENSG00000151883.17 PARP8 127918 5.92e-11 0.277948 2e-08 breast cancer 5_50793817 rs26067 ENSG00000170571.11 EMB 350569 2.19e-06 -0.1361 2e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 1e-39 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 7e-20 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 5e-09 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 3e-36 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 1e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.57e-09 0.346552 3e-27 breast cancer 5_56737113 rs1862626 ENSG00000155542.11 SETD9 -172147 3.29e-09 0.345482 4e-12 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 3.79e-30 0.622834 2e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 1.03e-55 -0.516803 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 5.08e-41 0.84489 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 7.78e-56 0.724446 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 4.26e-59 -0.727633 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 3.89e-38 -0.806249 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 7.06e-59 0.518789 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.41e-60 -0.744399 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.69e-59 0.528027 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.54e-37 -0.81207 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.41e-60 -0.744399 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.69e-59 0.528027 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.54e-37 -0.81207 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.41e-60 -0.744399 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.69e-59 0.528027 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.54e-37 -0.81207 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.41e-60 -0.744399 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.69e-59 0.528027 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.54e-37 -0.81207 4e-09 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 2.65e-44 -0.482408 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 1.23e-22 0.661526 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 8.89e-50 0.707518 2e-06 breast cancer 6_127279485 rs2180341 ENSG00000189367.14 KIAA0408 -179906 5.9e-05 0.125967 3e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 5.42e-13 -0.292954 8e-10 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 5.42e-13 -0.292954 4e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 5.42e-13 -0.292954 2e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 5.42e-13 -0.292954 3e-12 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 7.17e-37 -1.14246 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 1.33e-37 -1.15693 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 1.36e-42 -1.10787 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 4.64e-58 -1.24469 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000112812.15 PRSS16 -784355 5.57e-06 0.525749 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 1.91e-57 -1.26406 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000112812.15 PRSS16 -254200 7.15e-06 0.529937 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000278828.1 H3C10 -816563 1.16e-05 -0.494816 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 2.6e-53 -1.18617 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000219392.1 ZNF602P -808573 9.08e-07 -0.629005 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000112812.15 PRSS16 59354 2.07e-06 0.539816 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000278828.1 H3C10 -503009 2.32e-05 -0.461189 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000197062.11 ZSCAN26 -959955 0.000234472 -0.211465 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000216901.1 ZNF603P -869133 1.48e-10 0.74129 2e-09 breast cancer 6_27457865 rs34196306 ENSG00000189298.13 ZKSCAN3 -892049 0.000580254 -0.267119 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000219392.1 ZNF602P -657763 3.22e-08 -0.731367 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000197062.11 ZSCAN26 -809145 2.59e-05 -0.250073 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000187987.9 ZSCAN23 -985637 0.000193992 0.329519 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000216901.1 ZNF603P -718323 4.86e-10 0.74771 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000278828.1 H3C10 -352199 9.66e-07 -0.551462 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000112812.15 PRSS16 210164 8.18e-05 0.466582 1e-09 breast cancer 6_27873148 rs45509595 ENSG00000197062.11 ZSCAN26 -393862 1.81e-05 -0.250239 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000112812.15 PRSS16 625447 5.21e-05 0.470506 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000216901.1 ZNF603P -303040 5.69e-11 0.771221 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000187987.9 ZSCAN23 -570354 0.000292108 0.314773 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000219392.1 ZNF602P -242480 1.54e-08 -0.73451 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000278828.1 H3C10 63084 5.11e-07 -0.554972 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000189298.13 ZKSCAN3 -476766 0.000508103 -0.265088 5e-09 breast cancer 6_28106103 rs34662244 ENSG00000219392.1 ZNF602P -9525 3.19e-08 -0.704295 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000112812.15 PRSS16 858402 0.000186079 0.426554 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000124613.8 ZNF391 731488 0.000264372 0.337192 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000278828.1 H3C10 296039 4.15e-07 -0.548017 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000187987.9 ZSCAN23 -337399 3.96e-05 0.349141 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000216901.1 ZNF603P -70085 1.51e-11 0.777012 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000233822.4 H2BC15 268343 0.000472601 -0.387794 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000189298.13 ZKSCAN3 -243811 0.000197206 -0.277858 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197279.3 ZNF165 24972 0.000651429 -0.390156 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197062.11 ZSCAN26 -160907 9.85e-06 -0.252685 3e-09 breast cancer 6_28364364 rs13214023 ENSG00000278828.1 554300 6.6e-07 -0.546515 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000216901.1 188176 4.7e-10 0.730847 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000219392.1 ZNF602P 248736 2.62e-07 -0.666953 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000233822.4 H2BC15 526604 6.95e-05 -0.446693 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000187987.9 ZSCAN23 -79138 3.45e-05 0.356897 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000189298.13 ZKSCAN3 14450 0.000149712 -0.287031 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000124613.8 ZNF391 989749 0.000530774 0.325186 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000197062.11 ZSCAN26 97354 3.91e-06 -0.267429 1e-09 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 0.00014685 0.162017 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 9.46e-10 0.175279 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 3.21e-13 0.303061 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 3.26e-08 0.322248 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000189298.13 ZKSCAN3 608529 5.5e-05 -0.150767 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 0.000137274 -0.109665 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 0.00014685 0.162017 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 9.46e-10 0.175279 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 3.21e-13 0.303061 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 3.26e-08 0.322248 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000189298.13 ZKSCAN3 608529 5.5e-05 -0.150767 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 0.000137274 -0.109665 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 0.00014685 0.162017 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 9.46e-10 0.175279 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 3.21e-13 0.303061 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 3.26e-08 0.322248 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000189298.13 ZKSCAN3 608529 5.5e-05 -0.150767 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 0.000137274 -0.109665 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 0.00014685 0.162017 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 9.46e-10 0.175279 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 3.21e-13 0.303061 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 3.26e-08 0.322248 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000189298.13 ZKSCAN3 608529 5.5e-05 -0.150767 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 0.000137274 -0.109665 3e-07 breast cancer 6_29280372 rs3130834 ENSG00000189298.13 ZKSCAN3 930458 6.89e-06 -0.335404 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000239257.1 RPL23AP1 -446510 5.17e-05 0.493115 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000281831.1 HCP5B -593411 1.68e-07 0.616285 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000229274.1 LINC02829 -217137 2.47e-09 0.444926 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000187987.9 ZSCAN23 836870 4.28e-05 0.348784 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204632.11 HLA-G -546595 9.62e-06 -0.576266 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204644.9 ZFP57 -400738 9.79e-11 0.877979 5e-09 breast cancer 6_29388554 rs9257809 ENSG00000204644.9 ZFP57 -292556 2.49e-12 0.927242 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204632.11 HLA-G -438413 1.81e-06 -0.607993 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000281831.1 HCP5B -485229 1.43e-08 0.65259 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000231074.8 HCG18 -938596 2.34e-05 -0.323294 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000187987.9 ZSCAN23 945052 0.000131183 0.319898 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000239257.1 RPL23AP1 -338328 1.66e-05 0.513491 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000230795.3 HLA-K -538624 1.06e-05 -0.554906 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000228078.1 HLA-U -545547 0.000186199 0.514185 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000229274.1 LINC02829 -108955 5.15e-09 0.427544 3e-08 breast cancer 6_29509637 rs1233480 ENSG00000230795.3 HLA-K -417541 0.000271104 -0.407156 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000281831.1 HCP5B -364146 3.9e-09 0.598192 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000229274.1 LINC02829 12128 6.49e-08 0.350732 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204644.9 ZFP57 -171473 2.07e-08 0.663399 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000235821.1 IFITM4P -241511 2.26e-05 -0.408159 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204632.11 HLA-G -317330 2.01e-05 -0.481432 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000239257.1 RPL23AP1 -217245 0.00013229 0.403857 5e-08 breast cancer 6_29693039 rs3116813 ENSG00000230795.3 HLA-K -234139 1.98e-06 -0.59178 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000281831.1 HCP5B -180744 5.1e-10 0.705183 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204632.11 HLA-G -133928 4.09e-07 -0.637243 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000146112.11 PPP1R18 -994856 7.92e-10 -0.299465 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000239257.1 RPL23AP1 -33843 9.95e-07 0.575365 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204644.9 ZFP57 11929 3.65e-14 0.987147 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000231074.8 HCG18 -634111 4.24e-05 -0.309912 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000228078.1 HLA-U -241062 6.75e-06 0.610552 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000229274.1 LINC02829 195530 1.01e-09 0.441504 6e-07 breast cancer 6_29785031 rs147680653 ENSG00000231074.8 HCG18 -542119 9.44e-05 -0.29648 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000239257.1 RPL23AP1 58149 7.82e-07 0.581975 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000229274.1 LINC02829 287522 6.21e-10 0.447751 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204632.11 HLA-G -41936 9.24e-07 -0.619306 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000228078.1 HLA-U -149070 3.46e-06 0.63036 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000137312.14 FLOT1 -957702 8.1e-06 0.210945 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000230795.3 HLA-K -142147 1.19e-06 -0.605318 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204644.9 ZFP57 103921 1.57e-14 1.00241 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000146112.11 PPP1R18 -902864 3.89e-10 -0.305295 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000281831.1 HCP5B -88752 2.58e-10 0.718132 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000230795.3 HLA-K -44235 7.83e-07 -0.597958 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000229274.1 LINC02829 385434 2.63e-09 0.419553 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000228078.1 HLA-U -51158 2.81e-06 0.618115 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000239257.1 RPL23AP1 156061 6.22e-07 0.570512 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000281831.1 HCP5B 9160 2.97e-11 0.731954 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000137312.14 FLOT1 -859790 1.4e-05 0.199706 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204644.9 ZFP57 201833 5.28e-14 0.955694 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204632.11 HLA-G 55976 5.57e-07 -0.613561 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000231074.8 HCG18 -444207 0.000126598 -0.28295 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000146112.11 PPP1R18 -804952 3.68e-09 -0.280366 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000137312.14 FLOT1 -739550 3.85e-05 0.190009 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000239257.1 RPL23AP1 276301 7.73e-07 0.567549 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000229274.1 LINC02829 505674 3.44e-09 0.417846 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000228078.1 HLA-U 69082 3.66e-06 0.612945 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204644.9 ZFP57 322073 5.63e-14 0.957587 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000281831.1 HCP5B 129400 2.93e-11 0.734363 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000231074.8 HCG18 -323967 0.000183554 -0.277092 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204632.11 HLA-G 176216 4.92e-07 -0.618264 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000146112.11 PPP1R18 -684712 2.89e-09 -0.283026 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000230795.3 HLA-K 76005 1.29e-06 -0.588187 7e-07 breast cancer 6_30107326 rs2523992 ENSG00000230795.3 HLA-K 180148 0.000107209 -0.374642 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204644.9 ZFP57 426216 1.53e-05 0.446591 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204632.11 HLA-G 280359 0.000404752 -0.347063 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204623.9 ZNRD1ASP 46073 5.98e-08 -0.209518 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000146112.11 PPP1R18 -580569 3.53e-09 -0.222928 2e-07 breast cancer 6_30365728 rs3094054 ENSG00000204644.9 ZFP57 684618 3.49e-12 0.92018 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000146112.11 PPP1R18 -322167 9.66e-11 -0.317389 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204525.16 HLA-C -906377 7.03e-08 0.529486 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000281831.1 HCP5B 491945 7.2e-09 0.664555 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000229274.1 LINC02829 868219 1.81e-07 0.383033 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204536.13 CCHCR1 -792510 2.71e-05 0.249359 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204540.10 PSORS1C1 -749022 1.85e-05 -0.436526 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000231074.8 HCG18 38578 0.000295285 -0.277135 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000228078.1 HLA-U 431627 3.37e-05 0.56866 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000230795.3 HLA-K 438550 1.51e-05 -0.544721 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000137312.14 FLOT1 -377005 5.76e-07 0.237195 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204632.11 HLA-G 538761 1.98e-07 -0.65982 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000239257.1 RPL23AP1 638846 9.82e-05 0.46477 1e-07 breast cancer 6_30374976 rs115707823 ENSG00000146112.11 PPP1R18 -312919 2.15e-06 -0.207747 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 6.19e-05 0.350369 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 1.41e-09 0.712478 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 6.79e-09 0.587928 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000239257.1 RPL23AP1 648094 2.49e-05 0.443561 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000228078.1 HLA-U 440875 3.35e-05 0.502412 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000229274.1 LINC02829 877467 2.82e-06 0.30468 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000146112.11 PPP1R18 -312919 2.15e-06 -0.207747 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 6.19e-05 0.350369 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 1.41e-09 0.712478 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 6.79e-09 0.587928 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000239257.1 RPL23AP1 648094 2.49e-05 0.443561 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000228078.1 HLA-U 440875 3.35e-05 0.502412 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000229274.1 LINC02829 877467 2.82e-06 0.30468 5e-07 breast cancer 6_30473526 rs3132615 ENSG00000228078.1 HLA-U 539425 4.97e-05 0.533664 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000230795.3 HLA-K 546348 0.000197258 -0.450664 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000281831.1 HCP5B 599743 4.62e-07 0.557968 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204632.11 HLA-G 646559 1.86e-06 -0.58146 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000146112.11 PPP1R18 -214369 3.36e-13 -0.339901 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204644.9 ZFP57 792416 3.44e-11 0.842736 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204540.10 PSORS1C1 -641224 7.34e-06 -0.437721 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000229274.1 LINC02829 976017 3.02e-07 0.360692 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204536.13 CCHCR1 -684712 1.18e-06 0.275808 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000137312.14 FLOT1 -269207 1.48e-07 0.238665 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204525.16 HLA-C -798579 2.85e-07 0.484273 2e-06 breast cancer 6_30576624 rs3132610 ENSG00000204536.13 CCHCR1 -581614 1.61e-08 0.328882 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204540.10 PSORS1C1 -538126 1.87e-07 -0.52235 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000146112.11 PPP1R18 -111271 1.78e-15 -0.380581 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204531.17 POU5F1 -604107 0.000295147 0.356603 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000239257.1 RPL23AP1 849742 0.000105675 0.4574 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137404.14 NRM -114796 6.93e-05 -0.256088 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137312.14 FLOT1 -166109 4.26e-08 0.256226 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204525.16 HLA-C -695481 4.16e-08 0.532172 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000281831.1 HCP5B 702841 5.54e-08 0.618361 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204632.11 HLA-G 749657 2.1e-07 -0.650854 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204644.9 ZFP57 895514 7.02e-12 0.897431 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000230795.3 HLA-K 649446 1.51e-05 -0.538579 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204516.9 MICB -918257 1.51e-06 0.435225 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000231074.8 HCG18 249474 0.000251214 -0.277059 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000228078.1 HLA-U 642523 2.83e-05 0.567464 1e-06 breast cancer 6_30682249 rs9262142 ENSG00000137312.14 FLOT1 -60484 8.81e-09 0.265608 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000231074.8 HCG18 355099 0.000172845 -0.281096 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204536.13 CCHCR1 -475989 3.2e-09 0.34036 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204516.9 MICB -812632 1.23e-06 0.434099 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204540.10 PSORS1C1 -432501 5.13e-08 -0.539241 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204531.17 POU5F1 -498482 0.000203252 0.361975 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000228078.1 HLA-U 748148 0.000143049 0.510953 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204525.16 HLA-C -589856 1.04e-08 0.548677 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000230795.3 HLA-K 755071 1.76e-05 -0.528659 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000281831.1 HCP5B 808466 1.75e-07 0.589157 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000146112.11 PPP1R18 -5646 6.38e-16 -0.38206 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204632.11 HLA-G 855282 1.01e-07 -0.660211 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137404.14 NRM -9171 5.03e-05 -0.258077 3e-06 breast cancer 6_30793795 rs3129984 ENSG00000204516.9 MICB -701086 1.75e-06 0.417635 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204580.13 DDR1 -82626 0.000267899 -0.244762 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000230795.3 HLA-K 866617 0.000102549 -0.467743 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204540.10 PSORS1C1 -320955 4.44e-09 -0.565065 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204632.11 HLA-G 966828 1.01e-07 -0.644096 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000281831.1 HCP5B 920012 2.78e-07 0.565658 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000228078.1 HLA-U 859694 0.000131008 0.501345 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204525.16 HLA-C -478310 8.53e-09 0.538376 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000146112.11 PPP1R18 105900 1.64e-15 -0.367847 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137411.16 VARS2 -120410 0.000340027 -0.259917 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204536.13 CCHCR1 -364443 6.32e-09 0.326035 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137404.14 NRM 102375 0.000186801 -0.23243 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137312.14 FLOT1 51062 1.65e-08 0.254526 8e-06 breast cancer 6_31347004 rs115392158 ENSG00000228789.6 HCG22 293554 7.25e-05 -0.274936 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 8.27e-15 -0.490167 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000234745.10 HLA-B -9438 0.000129474 0.153804 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 7.66e-05 -0.281204 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 9.43e-14 -0.312954 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 2.17e-10 -0.355594 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000250535.1 STK19B -666266 4.75e-06 -0.323212 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204536.13 CCHCR1 188766 7.3e-05 0.150014 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000146112.11 PPP1R18 659109 0.000235517 -0.116712 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000228789.6 HCG22 293554 7.25e-05 -0.274936 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 8.27e-15 -0.490167 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000234745.10 HLA-B -9438 0.000129474 0.153804 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 7.66e-05 -0.281204 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 9.43e-14 -0.312954 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 2.17e-10 -0.355594 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000250535.1 STK19B -666266 4.75e-06 -0.323212 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204536.13 CCHCR1 188766 7.3e-05 0.150014 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000146112.11 PPP1R18 659109 0.000235517 -0.116712 3e-07 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 4.19e-12 -0.55378 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000196735.11 HLA-DQA1 71517 2.13e-05 -0.307482 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 1.67e-10 -0.293815 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 2.64e-15 0.67443 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 1.28e-05 0.194291 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000248290.1 TNXA 687224 1.04e-05 -0.289027 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 2.21e-09 -0.364436 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000250535.1 STK19B 686426 0.000197569 -0.286458 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 4.19e-12 -0.55378 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000196735.11 HLA-DQA1 71517 2.13e-05 -0.307482 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 1.67e-10 -0.293815 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 2.64e-15 0.67443 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 1.28e-05 0.194291 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000248290.1 TNXA 687224 1.04e-05 -0.289027 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 2.21e-09 -0.364436 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000250535.1 STK19B 686426 0.000197569 -0.286458 5e-07 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 1.11e-79 -1.06475 9e-13 breast cancer 6_33272092 rs17215231 ENSG00000235863.3 B3GALT4 -5040 1.19e-05 0.209928 9e-13 breast cancer 6_43259403 rs111342015 ENSG00000137171.14 KLC4 218626 0.0001126 0.142717 9e-08 breast cancer 6_43259403 rs111342015 ENSG00000112667.12 DNPH1 29919 4.21e-19 -0.414137 9e-08 breast cancer 7_100437651 rs117911427 ENSG00000242294.6 STAG3L5P 101239 8.13e-09 0.784641 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000085514.15 PILRA 64206 1.37e-07 0.92168 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000121716.20 PILRB 85475 1.95e-09 0.699675 7e-06 breast cancer 7_102478605 rs369574511 ENSG00000160991.15 ORAI2 45499 2.67e-05 0.144262 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000233297.4 RASA4DP -211864 1.58e-05 0.284238 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000005075.15 POLR2J -302 6.33e-13 0.210933 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000105808.17 RASA4 -138152 1.14e-05 0.263571 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 1.72e-11 -0.205379 2e-07 breast cancer 7_103022031 rs7458786 ENSG00000161036.12 LRWD1 557102 0.000167406 0.155375 9e-06 breast cancer 7_103251337 rs6946892 ENSG00000228049.7 POLR2J2 579708 2.88e-05 0.300238 1e-07 breast cancer 7_103251337 rs6946892 ENSG00000105808.17 RASA4 634580 0.000213277 0.22757 1e-07 breast cancer 7_103251337 rs6946892 ENSG00000267368.1 UPK3BL1 608546 1.21e-05 0.290356 1e-07 breast cancer 7_144351809 rs62485509 ENSG00000213214.4 ARHGEF35 163414 6.74e-05 0.324527 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000170356.8 OR2A20P 98852 1.07e-10 0.494263 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000204959.4 ARHGEF34P 64843 7.98e-15 -0.563454 4e-12 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 1e-08 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 1e-08 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 1e-08 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 7e-12 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 7e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 7e-12 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 1e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 1e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 1e-11 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 2e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 2e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 2e-11 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 4e-10 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 4e-10 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 4e-10 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 4.23e-05 -0.29239 7e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 2.34e-09 0.403055 7e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 4.57e-14 -0.481636 7e-11 breast cancer 7_144477198 rs13230714 ENSG00000204959.4 ARHGEF34P 190232 1.7e-07 -0.327617 1e-06 breast cancer 7_74696373 rs74910854 ENSG00000263001.5 GTF2I 38706 4.71e-15 0.288101 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000123965.13 PMS2P5 -197743 2.06e-16 0.922891 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 1.31e-22 0.857704 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000184616.8 SPDYE12 -216883 9.49e-05 0.421413 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277072.4 STAG3L2 -194237 1.46e-10 0.481979 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277053.4 GTF2IP1 -541323 2.08e-12 -0.585465 5e-06 breast cancer 8_17926905 rs11779988 ENSG00000104763.18 ASAH1 -158093 1.95e-06 0.134018 2e-06 breast cancer 8_19828398 rs7017697 ENSG00000104613.11 INTS10 11258 4.67e-05 0.109876 1e-06 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 3.02e-13 0.428149 1e-08 breast cancer 8_220692 rs66823261 ENSG00000172748.13 ZNF596 -11540 2.97e-05 -0.171223 1e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 3.02e-13 0.428149 6e-09 breast cancer 8_220692 rs66823261 ENSG00000172748.13 ZNF596 -11540 2.97e-05 -0.171223 6e-09 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 3.02e-13 0.428149 3e-08 breast cancer 8_220692 rs66823261 ENSG00000172748.13 ZNF596 -11540 2.97e-05 -0.171223 3e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 3.02e-13 0.428149 3e-07 breast cancer 8_220692 rs66823261 ENSG00000172748.13 ZNF596 -11540 2.97e-05 -0.171223 3e-07 breast cancer 8_30372068 rs7834448 ENSG00000254109.5 RBPMS-AS1 -13333 3.12e-10 -0.212835 7e-06 breast cancer 8_30372068 rs7834448 ENSG00000254152.1 PPIAP84 21721 5.08e-06 0.298276 7e-06 breast cancer 8_80887958 rs6473252 ENSG00000164684.13 ZNF704 13177 2.63e-13 0.168098 8e-07 breast cancer 9_103912867 rs718857 ENSG00000136824.18 SMC2 -181393 2.91e-14 -0.189536 2e-06 breast cancer 9_103912867 rs718857 ENSG00000270332.1 SMC2-DT -180206 1.79e-08 -0.136237 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 9.53e-33 -0.287796 3e-08 breast cancer 9_104094512 rs4742903 ENSG00000270332.1 SMC2-DT 1439 2.75e-09 -0.146309 3e-08 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 9.53e-33 -0.287796 2e-07 breast cancer 9_104094512 rs4742903 ENSG00000270332.1 SMC2-DT 1439 2.75e-09 -0.146309 2e-07 breast cancer 9_133463535 rs3124765 ENSG00000160325.14 CACFD1 3570 3.13e-05 -0.183063 2e-06 breast cancer 9_133463535 rs3124765 ENSG00000148290.9 SURF1 106859 5.04e-13 0.382791 2e-06 breast cancer 9_22067594 rs10811650 ENSG00000240498.6 CDKN2B-AS1 72816 0.000103617 0.215276 2e-13 breast cancer 9_5956008 rs10975370 ENSG00000183354.11 KIAA2026 -51817 1.12e-07 0.180335 3e-06