DISEASE	CHR_POS	SNPS	ENSEMBLE_ID	GENE_NAME	TSS_DISTANCE	GTEx_PVALUE	GTEx_SLOPE	GWAS_PVALUE
breast cancer	1_100414772	rs612683	ENSG00000079335.18	CDC14A	63038	5.44e-12	-0.52117	3e-07
breast cancer	1_119894128	rs35273427	ENSG00000134250.19	NOTCH2	-175498	1.24e-07	-0.524499	2e-07
breast cancer	1_121121848	rs369304377	ENSG00000270231.3	NBPF8	685495	5.95e-18	0.604175	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000270392.2	PFN1P2	687796	5.21e-15	0.533323	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000171943.11	SRGAP2C	-62962	1.25e-09	-0.435333	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000273136.6	NBPF26	397925	9.9e-18	0.647263	2e-29
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	4e-20
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	4e-20
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000273136.6	NBPF26	814892	1.99e-15	0.601895	8e-54
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	1.69e-11	-0.471645	8e-54
breast cancer	1_155212052	rs2974935	ENSG00000160766.14	GBAP1	-15370	2.64e-12	-0.401644	2e-07
breast cancer	1_155212052	rs2974935	ENSG00000169231.13	THBS3	4071	6.15e-05	0.156039	2e-07
breast cancer	1_155212373	rs2075570	ENSG00000169231.13	THBS3	4392	3.72e-05	0.159861	5e-06
breast cancer	1_155212373	rs2075570	ENSG00000160766.14	GBAP1	-15049	2.23e-12	-0.401552	5e-06
breast cancer	1_155216951	rs1057941	ENSG00000160766.14	GBAP1	-10471	8.22e-09	-0.352211	2e-07
breast cancer	1_155302483	rs7524950	ENSG00000203761.5	MSTO2P	-443346	4.31e-05	-0.231583	3e-09
breast cancer	1_155446537	rs10796944	ENSG00000203761.5	MSTO2P	-299292	2.43e-10	-0.391329	7e-10
breast cancer	1_155587180	rs12091730	ENSG00000203761.5	MSTO2P	-158649	1.98e-10	-0.394929	2e-10
breast cancer	1_155587180	rs12091730	ENSG00000116580.18	GON4L	-272220	1.47e-05	-0.239791	2e-10
breast cancer	1_155697170	rs348196	ENSG00000203761.5	MSTO2P	-48659	2.85e-11	-0.406068	2e-08
breast cancer	1_18480845	rs2992756	ENSG00000179023.8	KLHDC7A	-137	3.23e-07	-0.317596	5e-17
breast cancer	1_18480845	rs2992756	ENSG00000179023.8	KLHDC7A	-137	3.23e-07	-0.317596	2e-15
breast cancer	1_91555907	rs12134245	ENSG00000097046.12	CDC7	55014	5.34e-06	-0.242685	4e-06
breast cancer	10_121904429	rs7899628	ENSG00000226864.2	ATE1-AS1	-23883	2.34e-06	-0.376902	9e-10
breast cancer	10_27080233	rs7918232	ENSG00000120539.14	MASTL	-75034	1.59e-12	0.723884	8e-06
breast cancer	10_92172529	rs72807246	ENSG00000228701.1	TNKS2-DT	374238	1.3e-06	0.601465	3e-06
breast cancer	11_18642694	rs10832963	ENSG00000179119.14	SPTY2D1	7903	1.09e-08	-0.35679	9e-06
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	1.74e-05	0.249193	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	1.74e-05	0.249193	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	1.74e-05	0.249193	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	1.74e-05	0.249193	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	1.74e-05	0.249193	2e-12
breast cancer	11_65935052	rs617791	ENSG00000175376.8	EIF1AD	-67026	7.75e-06	-0.257086	7e-06
breast cancer	11_803017	rs6597981	ENSG00000177595.17	PIDD1	-6629	1.28e-08	0.293305	1e-12
breast cancer	11_803017	rs6597981	ENSG00000255284.1	GATD1-DT	25439	1.52e-20	0.360518	1e-12
breast cancer	11_803017	rs6597981	ENSG00000177595.17	PIDD1	-6629	1.28e-08	0.293305	3e-12
breast cancer	11_803017	rs6597981	ENSG00000255284.1	GATD1-DT	25439	1.52e-20	0.360518	3e-12
breast cancer	15_50402109	rs4774565	ENSG00000244879.6	GABPB1-AS1	46700	1.24e-08	-0.387675	2e-06
breast cancer	15_74843920	rs6938	ENSG00000140474.12	ULK3	723	1.35e-08	-0.347266	9e-08
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	6.23e-11	-0.40364	6e-08
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	6.23e-11	-0.40364	5e-08
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	6.23e-11	-0.40364	4e-07
breast cancer	15_75516399	rs8027365	ENSG00000140400.16	MAN2C1	148245	1.42e-24	0.760498	1e-07
breast cancer	16_56387075	rs2432539	ENSG00000125124.11	BBS2	-133208	6.93e-06	-0.350656	4e-08
breast cancer	16_56387075	rs2432539	ENSG00000125124.11	BBS2	-133208	6.93e-06	-0.350656	3e-10
breast cancer	16_56497273	rs2303282	ENSG00000125124.11	BBS2	-23010	8.64e-06	-0.341905	3e-07
breast cancer	16_71475893	rs8050871	ENSG00000167377.17	ZNF23	12798	2.47e-10	-0.323445	3e-06
breast cancer	17_30884649	rs7223535	ENSG00000176390.11	CRLF3	59873	2.58e-07	0.292923	4e-10
breast cancer	17_30887862	rs113934718	ENSG00000176390.11	CRLF3	63086	1.14e-06	0.282509	1e-08
breast cancer	17_30894259	rs62070652	ENSG00000176390.11	CRLF3	69483	1.14e-06	0.282509	1e-06
breast cancer	17_30894259	rs62070652	ENSG00000176390.11	CRLF3	69483	1.14e-06	0.282509	6e-09
breast cancer	17_45394123	rs4763	ENSG00000214425.7	LRRC37A4P	-156212	6.76e-27	-1.11402	2e-08
breast cancer	17_45394123	rs4763	ENSG00000214401.4	KANSL1-AS1	-799453	8.62e-27	1.13554	2e-08
breast cancer	17_45394123	rs4763	ENSG00000263503.1	MAPK8IP1P2	-208217	9.28e-28	1.1842	2e-08
breast cancer	17_45394123	rs4763	ENSG00000274883.1	Metazoa_SRP	-537683	3.48e-12	-0.545936	2e-08
breast cancer	17_45394123	rs4763	ENSG00000262500.1	MAPK8IP1P1	-849483	1.48e-23	1.06158	2e-08
breast cancer	17_45394123	rs4763	ENSG00000279685.2	MAPT-IT1	-501660	4.17e-08	-0.430429	2e-08
breast cancer	17_45394123	rs4763	ENSG00000264070.1	DND1P1	-191748	2.14e-25	1.27602	2e-08
breast cancer	17_45941122	rs62061734	ENSG00000238083.7	LRRC37A2	-570389	8.77e-21	0.846246	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000264070.1	DND1P1	355251	5.38e-32	1.22678	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000274883.1	Metazoa_SRP	9316	3.14e-16	-0.552625	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000214425.7	LRRC37A4P	390787	3.27e-30	-1.02772	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000185829.17	ARL17A	-638560	3.84e-08	0.606787	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000263503.1	MAPK8IP1P2	338782	2.94e-39	1.17586	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000262500.1	MAPK8IP1P1	-302484	1.24e-30	1.03515	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000279685.2	MAPT-IT1	45339	3.46e-12	-0.470641	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000214401.4	KANSL1-AS1	-252454	2.63e-35	1.10536	8e-12
breast cancer	17_46751565	rs199533	ENSG00000262500.1	MAPK8IP1P1	507959	4.88e-33	1.05704	5e-08
breast cancer	17_46751565	rs199533	ENSG00000274883.1	Metazoa_SRP	819759	6.57e-14	-0.512282	5e-08
breast cancer	17_46751565	rs199533	ENSG00000238083.7	LRRC37A2	240054	2.3e-20	0.835146	5e-08
breast cancer	17_46751565	rs199533	ENSG00000279685.2	MAPT-IT1	855782	9.35e-09	-0.395214	5e-08
breast cancer	17_46751565	rs199533	ENSG00000214401.4	KANSL1-AS1	557989	9.57e-47	1.19429	5e-08
breast cancer	17_46751565	rs199533	ENSG00000185829.17	ARL17A	171883	2.59e-09	0.649238	5e-08
breast cancer	17_46788237	rs199498	ENSG00000238083.7	LRRC37A2	276726	6.35e-19	0.772847	2e-08
breast cancer	17_46788237	rs199498	ENSG00000274883.1	Metazoa_SRP	856431	2.71e-11	-0.441834	2e-08
breast cancer	17_46788237	rs199498	ENSG00000214401.4	KANSL1-AS1	594661	2.73e-29	0.985702	2e-08
breast cancer	17_46788237	rs199498	ENSG00000262500.1	MAPK8IP1P1	544631	2.48e-21	0.857439	2e-08
breast cancer	17_46788237	rs199498	ENSG00000185829.17	ARL17A	208555	1.81e-10	0.658545	2e-08
breast cancer	17_46788237	rs199498	ENSG00000279685.2	MAPT-IT1	892454	6.63e-06	-0.301468	2e-08
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	1.84e-10	0.276534	1e-08
breast cancer	17_54979110	rs6504950	ENSG00000166263.13	STXBP4	10324	2.13e-09	0.455994	1e-08
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	1.84e-10	0.276534	5e-12
breast cancer	17_54979110	rs6504950	ENSG00000166263.13	STXBP4	10324	2.13e-09	0.455994	5e-12
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	1.84e-10	0.276534	8e-09
breast cancer	17_54979110	rs6504950	ENSG00000166263.13	STXBP4	10324	2.13e-09	0.455994	8e-09
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	1.84e-10	0.276534	2e-13
breast cancer	17_54979110	rs6504950	ENSG00000166263.13	STXBP4	10324	2.13e-09	0.455994	2e-13
breast cancer	17_55132413	rs2787486	ENSG00000166260.10	COX11	163649	4.01e-07	0.220087	6e-29
breast cancer	17_55132413	rs2787486	ENSG00000166260.10	COX11	163649	4.01e-07	0.220087	2e-34
breast cancer	17_55135212	rs2628317	ENSG00000166263.13	STXBP4	166426	8.37e-06	0.371279	4e-16
breast cancer	17_55135212	rs2628317	ENSG00000166260.10	COX11	166448	8.55e-08	0.252689	4e-16
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	1e-12
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	1e-12
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	9e-13
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	9e-13
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	4e-13
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	4e-13
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	2e-06
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	2e-06
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	2e-09
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	2e-09
breast cancer	19_17278895	rs8170	ENSG00000105393.15	BABAM1	11545	1e-05	-0.28757	7e-21
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	6.11e-06	0.396377	7e-21
breast cancer	19_18422832	rs7258465	ENSG00000130511.15	SSBP4	3968	5.19e-06	-0.23129	3e-28
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	5e-28
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	6e-14
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	4e-15
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	6e-06
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	5e-15
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	5.27e-06	-0.232858	2e-31
breast cancer	19_19417997	rs1469713	ENSG00000250067.11	YJEFN3	-111367	2.72e-06	-0.23029	1e-10
breast cancer	19_19434887	rs2965183	ENSG00000250067.11	YJEFN3	-94477	2.67e-06	-0.232401	6e-12
breast cancer	19_19434887	rs2965183	ENSG00000250067.11	YJEFN3	-94477	2.67e-06	-0.232401	1e-11
breast cancer	19_19535463	rs2304098	ENSG00000250067.11	YJEFN3	6099	2.22e-05	-0.209706	2e-11
breast cancer	19_43919418	rs375066	ENSG00000167637.16	ZNF283	92126	1.5e-05	-0.36204	2e-14
breast cancer	2_201258707	rs3769821	ENSG00000064012.21	CASP8	25264	2.38e-05	0.278457	4e-18
breast cancer	2_201288355	rs1035142	ENSG00000064012.21	CASP8	54912	8.32e-10	0.39092	3e-09
breast cancer	2_24748307	rs6710503	ENSG00000084676.15	NCOA1	256393	5.28e-06	0.224744	5e-06
breast cancer	20_64247978	rs6062356	ENSG00000203880.11	PCMTD2	-7717	1.29e-06	0.362364	3e-06
breast cancer	21_46360308	rs9808759	ENSG00000182362.13	YBEY	73971	1.97e-06	-0.802474	6e-09
breast cancer	21_46360308	rs9808759	ENSG00000182362.13	YBEY	73971	1.97e-06	-0.802474	4e-07
breast cancer	3_27123683	rs1522151	ENSG00000163491.16	NEK10	-245777	5.11e-07	-0.447196	1e-09
breast cancer	3_27145111	rs1357245	ENSG00000163491.16	NEK10	-224349	3.39e-08	-0.480012	2e-07
breast cancer	3_27285723	rs481519	ENSG00000033867.16	SLC4A7	-198697	1.63e-05	0.262143	2e-09
breast cancer	3_27285723	rs481519	ENSG00000163491.16	NEK10	-83737	2.95e-11	0.554964	2e-09
breast cancer	3_27302153	rs653465	ENSG00000033867.16	SLC4A7	-182267	1.82e-05	0.260318	5e-12
breast cancer	3_27302153	rs653465	ENSG00000163491.16	NEK10	-67307	3.69e-11	0.551696	5e-12
breast cancer	3_27312225	rs552647	ENSG00000163491.16	NEK10	-57235	3.69e-11	0.551696	3e-20
breast cancer	3_27312225	rs552647	ENSG00000033867.16	SLC4A7	-172195	1.82e-05	0.260318	3e-20
breast cancer	3_27327393	rs3920005	ENSG00000033867.16	SLC4A7	-157027	2.77e-06	-0.287332	8e-14
breast cancer	3_27327393	rs3920005	ENSG00000163491.16	NEK10	-42067	6.64e-13	-0.601167	8e-14
breast cancer	3_27347329	rs112238765	ENSG00000033867.16	SLC4A7	-137091	6.68e-07	-0.31592	1e-18
breast cancer	3_27347329	rs112238765	ENSG00000163491.16	NEK10	-22131	4.13e-13	-0.630598	1e-18
breast cancer	3_27359756	rs11715126	ENSG00000033867.16	SLC4A7	-124664	6.68e-07	-0.31592	2e-12
breast cancer	3_27359756	rs11715126	ENSG00000163491.16	NEK10	-9704	4.13e-13	-0.630598	2e-12
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	5e-57
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	5e-57
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	5e-62
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	5e-62
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	6e-07
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	6e-07
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	2e-08
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	2e-08
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	4e-23
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	4e-23
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	2e-30
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	2e-30
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	5e-22
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	5e-22
breast cancer	3_27374522	rs4973768	ENSG00000033867.16	SLC4A7	-109898	1.05e-05	0.263557	3e-30
breast cancer	3_27374522	rs4973768	ENSG00000163491.16	NEK10	5062	8.97e-09	0.480138	3e-30
breast cancer	3_27468223	rs7619833	ENSG00000163491.16	NEK10	98763	3.89e-09	0.47687	3e-45
breast cancer	3_27468223	rs7619833	ENSG00000033867.16	SLC4A7	-16197	4.1e-06	0.267103	3e-45
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	7.27e-06	0.468443	2e-08
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	7.27e-06	0.468443	7e-16
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	7.27e-06	0.468443	8e-07
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	7.27e-06	0.468443	6e-15
breast cancer	3_46846708	rs56387622	ENSG00000188086.13	PRSS45P	101953	6.53e-08	0.558106	5e-19
breast cancer	3_46846708	rs56387622	ENSG00000226074.4	PRSS44P	34150	4.66e-05	0.638471	5e-19
breast cancer	4_38814717	rs6815814	ENSG00000174125.7	TLR1	9139	1.05e-07	-0.331492	1e-11
breast cancer	4_38814717	rs6815814	ENSG00000174125.7	TLR1	9139	1.05e-07	-0.331492	6e-13
breast cancer	5_128098106	rs1112956	ENSG00000245937.7	SLC12A2-DT	14934	2.27e-18	0.761441	9e-06
breast cancer	5_128227188	rs36715	ENSG00000245937.7	SLC12A2-DT	144016	5.64e-09	0.473537	4e-06
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	7e-20
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	1e-08
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	3e-27
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	3e-36
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	5e-09
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	6.88e-08	0.417616	1e-39
breast cancer	5_56737113	rs1862626	ENSG00000155542.11	SETD9	-172147	2.36e-07	0.396267	4e-12
breast cancer	5_56899963	rs12655019	ENSG00000155542.11	SETD9	-9297	1.3e-06	-0.518421	3e-10
breast cancer	5_56977866	rs10036895	ENSG00000155542.11	SETD9	68606	1.08e-05	0.319852	2e-12
breast cancer	5_81972251	rs111549985	ENSG00000186468.12	RPS23	-306326	4.66e-08	-0.277656	6e-12
breast cancer	5_81972251	rs111549985	ENSG00000152348.15	ATG10	226	1.53e-26	0.887546	6e-12
breast cancer	5_81972251	rs111549985	ENSG00000205464.11	ATP6AP1L	-307211	3.23e-17	0.464342	6e-12
breast cancer	5_82161539	rs2407064	ENSG00000152348.15	ATG10	189514	2.1e-26	-0.882416	3e-08
breast cancer	5_82161539	rs2407064	ENSG00000205464.11	ATP6AP1L	-117923	2.27e-17	-0.464381	3e-08
breast cancer	5_82161539	rs2407064	ENSG00000186468.12	RPS23	-117038	9.28e-08	0.270863	3e-08
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.09e-08	0.29249	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	5.22e-25	-0.87743	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	1.69e-18	-0.484398	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.09e-08	0.29249	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	5.22e-25	-0.87743	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	1.69e-18	-0.484398	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.09e-08	0.29249	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	5.22e-25	-0.87743	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	1.69e-18	-0.484398	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.09e-08	0.29249	4e-09
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	5.22e-25	-0.87743	4e-09
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	1.69e-18	-0.484398	4e-09
breast cancer	5_82340549	rs2407156	ENSG00000152348.15	ATG10	368524	1.28e-15	0.67984	2e-06
breast cancer	5_82340549	rs2407156	ENSG00000205464.11	ATP6AP1L	61087	4.27e-16	0.430094	2e-06
breast cancer	5_82340549	rs2407156	ENSG00000186468.12	RPS23	61972	3.14e-07	-0.249419	2e-06
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	2.13e-17	-0.756385	2e-12
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	2.13e-17	-0.756385	3e-12
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	2.13e-17	-0.756385	4e-08
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	2.13e-17	-0.756385	8e-10
breast cancer	6_25710343	rs68006638	ENSG00000186470.13	BTN3A2	-654816	1.56e-14	-1.20113	2e-07
breast cancer	6_25874195	rs13198474	ENSG00000186470.13	BTN3A2	-490964	6.31e-15	-1.20229	2e-07
breast cancer	6_26175638	rs17598658	ENSG00000186470.13	BTN3A2	-189521	1.01e-14	-1.13276	2e-09
breast cancer	6_26463346	rs13195401	ENSG00000186470.13	BTN3A2	98187	3.66e-18	-1.2024	2e-09
breast cancer	6_26993501	rs34546498	ENSG00000186470.13	BTN3A2	628342	6.55e-17	-1.18581	9e-10
breast cancer	6_27307055	rs56114371	ENSG00000197062.11	ZSCAN26	-959955	8.98e-05	-0.325524	2e-09
breast cancer	6_27307055	rs56114371	ENSG00000186470.13	BTN3A2	941896	6.55e-17	-1.18581	2e-09
breast cancer	6_27457865	rs34196306	ENSG00000197062.11	ZSCAN26	-809145	0.000104958	-0.319716	1e-09
breast cancer	6_27873148	rs45509595	ENSG00000197062.11	ZSCAN26	-393862	0.000104958	-0.319716	5e-09
breast cancer	6_28106103	rs34662244	ENSG00000197062.11	ZSCAN26	-160907	6.75e-05	-0.324439	3e-09
breast cancer	6_28364364	rs13214023	ENSG00000197062.11	ZSCAN26	97354	3.67e-05	-0.336467	1e-09
breast cancer	6_29280372	rs3130834	ENSG00000281831.1	HCP5B	-593411	1.36e-10	0.956985	5e-09
breast cancer	6_29280372	rs3130834	ENSG00000204644.9	ZFP57	-400738	9.31e-11	1.01186	5e-09
breast cancer	6_29388554	rs9257809	ENSG00000281831.1	HCP5B	-485229	3.95e-11	0.961011	3e-08
breast cancer	6_29388554	rs9257809	ENSG00000204616.10	TRIM31	-724552	8.26e-05	-0.48991	3e-08
breast cancer	6_29388554	rs9257809	ENSG00000204644.9	ZFP57	-292556	2.12e-11	1.02039	3e-08
breast cancer	6_29509637	rs1233480	ENSG00000204644.9	ZFP57	-171473	4.55e-09	0.842761	5e-08
breast cancer	6_29509637	rs1233480	ENSG00000281831.1	HCP5B	-364146	8.69e-11	0.879207	5e-08
breast cancer	6_29693039	rs3116813	ENSG00000281831.1	HCP5B	-180744	1.69e-10	0.926759	6e-07
breast cancer	6_29693039	rs3116813	ENSG00000204644.9	ZFP57	11929	1.35e-10	0.976846	6e-07
breast cancer	6_29785031	rs147680653	ENSG00000204616.10	TRIM31	-328075	7.19e-05	-0.490264	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000281831.1	HCP5B	-88752	2.18e-11	0.965041	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000204644.9	ZFP57	103921	2.58e-11	1.00913	1e-06
breast cancer	6_29882943	rs1611579	ENSG00000204616.10	TRIM31	-230163	9.21e-06	-0.535291	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000281831.1	HCP5B	9160	1.2e-12	0.998914	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000204644.9	ZFP57	201833	4.66e-13	1.06424	8e-07
breast cancer	6_30003183	rs3094146	ENSG00000204644.9	ZFP57	322073	2.56e-12	1.05025	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000281831.1	HCP5B	129400	8.42e-13	1.02001	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000204616.10	TRIM31	-109923	5.52e-06	-0.555992	7e-07
breast cancer	6_30107326	rs2523992	ENSG00000204616.10	TRIM31	-5780	8.83e-13	-0.66879	2e-07
breast cancer	6_30107326	rs2523992	ENSG00000204644.9	ZFP57	426216	4.17e-05	0.51467	2e-07
breast cancer	6_30107326	rs2523992	ENSG00000281831.1	HCP5B	233543	4.44e-05	0.488885	2e-07
breast cancer	6_30365728	rs3094054	ENSG00000204525.16	HLA-C	-906377	4.29e-05	0.624368	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000204644.9	ZFP57	684618	2.29e-10	0.998101	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000204616.10	TRIM31	252622	5.35e-07	-0.631418	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000281831.1	HCP5B	491945	1.9e-11	1.0004	1e-07
breast cancer	6_30374976	rs115707823	ENSG00000204616.10	TRIM31	261870	6.48e-08	-0.653847	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204642.13	HLA-F	652201	5.19e-05	0.539554	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204644.9	ZFP57	693866	2.58e-11	1.00813	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000281831.1	HCP5B	501193	9.47e-12	0.979184	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204536.13	CCHCR1	-783262	1.54e-05	0.482646	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204525.16	HLA-C	-897129	3.58e-05	0.60914	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204616.10	TRIM31	261870	6.48e-08	-0.653847	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000204642.13	HLA-F	652201	5.19e-05	0.539554	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000204644.9	ZFP57	693866	2.58e-11	1.00813	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000281831.1	HCP5B	501193	9.47e-12	0.979184	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000204536.13	CCHCR1	-783262	1.54e-05	0.482646	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000204525.16	HLA-C	-897129	3.58e-05	0.60914	5e-07
breast cancer	6_30473526	rs3132615	ENSG00000204644.9	ZFP57	792416	9.12e-09	0.888249	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000281831.1	HCP5B	599743	5.73e-10	0.906129	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000204616.10	TRIM31	360420	5.06e-06	-0.561929	2e-06
breast cancer	6_30576624	rs3132610	ENSG00000204616.10	TRIM31	463518	6.57e-07	-0.604949	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000281831.1	HCP5B	702841	2.53e-10	0.916314	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000204644.9	ZFP57	895514	2.45e-09	0.91231	1e-06
breast cancer	6_30682249	rs9262142	ENSG00000204616.10	TRIM31	569143	6.57e-07	-0.604949	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000281831.1	HCP5B	808466	2.53e-10	0.916314	3e-06
breast cancer	6_30793795	rs3129984	ENSG00000204525.16	HLA-C	-478310	4.85e-05	0.571939	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000281831.1	HCP5B	920012	3.68e-10	0.868353	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000204616.10	TRIM31	680689	3.66e-07	-0.590061	8e-06
breast cancer	6_31347004	rs115392158	ENSG00000204516.9	MICB	-147877	5.43e-05	0.370886	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000244731.7	C4A	-635020	4.89e-11	-0.423798	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000250535.1	STK19B	-666266	2.24e-05	-0.369773	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000248290.1	TNXA	-665468	6.1e-07	-0.514911	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000204516.9	MICB	-147877	5.43e-05	0.370886	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000244731.7	C4A	-635020	4.89e-11	-0.423798	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000250535.1	STK19B	-666266	2.24e-05	-0.369773	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000248290.1	TNXA	-665468	6.1e-07	-0.514911	3e-07
breast cancer	6_32699696	rs147527678	ENSG00000248290.1	TNXA	687224	3.81e-08	-0.613247	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000204338.8	CYP21A1P	694007	6.94e-08	-0.505439	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000204257.14	HLA-DMA	-269398	2.22e-06	0.458153	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000179344.16	HLA-DQB1	31313	2.95e-07	-0.497815	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000244731.7	C4A	717672	2.24e-12	-0.488362	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000250535.1	STK19B	686426	8.61e-08	-0.500475	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000248290.1	TNXA	687224	3.81e-08	-0.613247	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000204338.8	CYP21A1P	694007	6.94e-08	-0.505439	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000204257.14	HLA-DMA	-269398	2.22e-06	0.458153	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000179344.16	HLA-DQB1	31313	2.95e-07	-0.497815	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000244731.7	C4A	717672	2.24e-12	-0.488362	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000250535.1	STK19B	686426	8.61e-08	-0.500475	5e-07
breast cancer	6_33272092	rs17215231	ENSG00000231500.6	RPS18	44	2.41e-12	-0.572838	9e-13
breast cancer	7_144351809	rs62485509	ENSG00000204959.4	ARHGEF34P	64843	7.06e-09	-0.477401	4e-12
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	7e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	2e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	7e-12
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	4e-10
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	1e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	5.75e-08	-0.415463	1e-08
breast cancer	7_144477198	rs13230714	ENSG00000204959.4	ARHGEF34P	190232	2.19e-07	-0.358067	1e-06
breast cancer	7_74696373	rs74910854	ENSG00000123965.13	PMS2P5	-197743	1.06e-05	0.627714	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000196275.13	GTF2IRD2	-155178	5.11e-07	0.469419	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000277053.4	GTF2IP1	-541323	6.44e-11	-0.90029	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000263001.5	GTF2I	38706	4.66e-06	0.26777	5e-06
breast cancer	8_123726378	rs970821	ENSG00000104537.16	ANXA13	-11029	2.69e-10	-0.535126	2e-12
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	1.26e-05	-0.401263	1e-10
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	1.26e-05	-0.401263	2e-08
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	1.26e-05	-0.401263	2e-11
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	5.36e-05	0.37907	1e-08
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	5.36e-05	0.37907	3e-08
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	5.36e-05	0.37907	6e-09
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	5.36e-05	0.37907	3e-07
breast cancer	9_104094512	rs4742903	ENSG00000136824.18	SMC2	252	1.31e-08	-0.26198	2e-07
breast cancer	9_104094512	rs4742903	ENSG00000136824.18	SMC2	252	1.31e-08	-0.26198	3e-08
breast cancer	9_133463535	rs3124765	ENSG00000175164.13	ABO	188321	2.14e-05	-0.501073	2e-06