DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.48e-08 -0.430933 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.48e-08 -0.430933 2e-10 breast cancer 1_155212052 rs2974935 ENSG00000231064.7 THBS3-AS1 17048 9.12e-08 0.401272 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000160766.14 GBAP1 -15370 1.66e-11 -0.47372 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000169231.13 THBS3 4071 1.36e-07 0.392389 2e-07 breast cancer 1_155212373 rs2075570 ENSG00000231064.7 THBS3-AS1 17369 9.12e-08 0.401272 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000160766.14 GBAP1 -15049 1.66e-11 -0.47372 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000169231.13 THBS3 4392 1.36e-07 0.392389 5e-06 breast cancer 1_155216951 rs1057941 ENSG00000160766.14 GBAP1 -10471 1.49e-06 -0.357723 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000231064.7 THBS3-AS1 21947 2.48e-07 0.393019 2e-07 breast cancer 1_155302483 rs7524950 ENSG00000225855.6 RUSC1-AS1 -19204 3.92e-06 0.443596 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000169231.13 THBS3 94502 2.93e-05 0.392287 3e-09 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 1.69e-06 0.287798 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 1.69e-06 0.287798 2e-08 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 5.56e-12 0.615415 2e-08 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 5.56e-12 0.615415 9e-10 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 8.59e-13 0.599635 3e-12 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 8.59e-13 0.599635 1e-08 breast cancer 10_27080233 rs7918232 ENSG00000120539.14 MASTL -75034 1.63e-05 0.477608 8e-06 breast cancer 10_5752689 rs55910451 ENSG00000057608.16 GDI2 -89443 4.06e-07 -0.401858 4e-07 breast cancer 11_111765903 rs643506 ENSG00000137713.15 PPP2R1B -524 4.72e-08 -0.518498 2e-07 breast cancer 11_18642694 rs10832963 ENSG00000179119.14 SPTY2D1 7903 4.08e-09 -0.38466 9e-06 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.01e-05 -0.282487 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.01e-05 -0.282487 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.01e-05 -0.282487 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.01e-05 -0.282487 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.01e-05 -0.282487 6e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 9.53e-06 0.303541 1e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 6.97e-13 0.590185 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 9.53e-06 0.303541 3e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 6.97e-13 0.590185 3e-12 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 1.84e-08 -0.579572 2e-06 breast cancer 15_74843920 rs6938 ENSG00000140474.12 ULK3 723 2.35e-07 -0.324297 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.14e-08 -0.334686 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.14e-08 -0.334686 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.14e-08 -0.334686 6e-08 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 1.38e-17 0.721986 1e-07 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 1.04e-15 0.839257 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.4e-06 0.425453 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.4e-06 0.425453 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.4e-06 0.425453 2e-19 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 3.42e-09 -0.443474 4e-08 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 3.42e-09 -0.443474 3e-10 breast cancer 16_56497273 rs2303282 ENSG00000125124.11 BBS2 -23010 2.84e-10 -0.469069 3e-07 breast cancer 16_71475893 rs8050871 ENSG00000167377.17 ZNF23 12798 3.03e-06 -0.368713 3e-06 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 2.17e-13 -0.912773 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 1.55e-17 1.18585 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 3.91e-21 1.27123 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 5.17e-18 1.01849 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 6.41e-29 1.30255 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 6.83e-07 0.690812 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 7.34e-23 1.02725 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 5.2e-18 -0.954254 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 1.84e-14 0.968767 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 4.97e-24 1.22963 8e-12 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 1.02e-07 0.769984 5e-08 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 9.5e-37 1.45716 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 2.38e-19 1.14223 5e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 1.14e-05 0.630873 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 1.02e-14 0.99776 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 1.1e-17 1.12138 2e-08 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 2.55e-05 -0.506632 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 1.25e-05 -0.486198 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000064012.21 CASP8 54912 8.29e-10 0.497103 3e-09 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 2.55e-05 -0.506632 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.55e-05 -0.506632 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.55e-05 -0.506632 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.55e-05 -0.506632 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.55e-05 -0.506632 9e-14 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 4.51e-07 -1.03356 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 4.51e-07 -1.03356 4e-07 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 2.37e-11 -0.715157 4e-06 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 2.37e-11 -0.715157 3e-17 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 2.37e-11 -0.715157 9e-14 breast cancer 3_156927968 rs7637701 ENSG00000240875.5 LINC00886 110906 4.33e-10 -0.650205 1e-06 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 6.86e-06 0.663771 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 6.86e-06 0.663771 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 6.86e-06 0.663771 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 6.86e-06 0.663771 6e-15 breast cancer 3_46846708 rs56387622 ENSG00000188086.13 PRSS45P 101953 5.65e-06 0.627941 5e-19 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 8.09e-06 0.403134 9e-06 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 1.96e-05 -0.300304 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 1.96e-05 -0.300304 8e-08 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 4.66e-12 0.710043 2e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 3.11e-08 -0.598215 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 5.69e-12 0.748835 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 1.81e-18 1.09753 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 2.75e-10 0.658502 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 1.47e-11 -0.724386 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 5.33e-14 -0.962587 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.47e-11 -0.724386 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 2.75e-10 0.658502 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.33e-14 -0.962587 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.47e-11 -0.724386 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 2.75e-10 0.658502 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.33e-14 -0.962587 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.47e-11 -0.724386 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 2.75e-10 0.658502 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.33e-14 -0.962587 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 1.47e-11 -0.724386 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 2.75e-10 0.658502 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.33e-14 -0.962587 1e-12 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 8.85e-13 0.746906 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 1.36e-08 -0.592159 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 1.06e-10 0.837651 2e-06 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.32e-13 -0.745684 2e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.32e-13 -0.745684 4e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.32e-13 -0.745684 3e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.32e-13 -0.745684 8e-10 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 1.21e-07 -1.04336 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 1.06e-06 -1.02591 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 2.53e-08 -1.07302 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 2.02e-09 -1.19824 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 2.02e-09 -1.19824 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 2.02e-09 -1.19824 2e-09 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.96e-05 -0.301173 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.96e-05 -0.301173 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.96e-05 -0.301173 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.96e-05 -0.301173 3e-07 breast cancer 6_29280372 rs3130834 ENSG00000204644.9 ZFP57 -400738 6.72e-05 1.08824 5e-09 breast cancer 6_29388554 rs9257809 ENSG00000204644.9 ZFP57 -292556 4.33e-05 1.07748 3e-08 breast cancer 6_29693039 rs3116813 ENSG00000204644.9 ZFP57 11929 4.45e-06 1.12316 6e-07 breast cancer 6_29785031 rs147680653 ENSG00000204644.9 ZFP57 103921 4.45e-06 1.12316 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000281831.1 HCP5B 9160 1.65e-05 0.995827 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204644.9 ZFP57 201833 1.07e-05 1.04622 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000281831.1 HCP5B 129400 5.85e-05 0.952519 7e-07 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 3.68e-13 -0.859916 9e-13 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 1.42e-08 -0.423143 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000105808.17 RASA4 -138152 2.91e-06 0.48402 2e-07 breast cancer 7_144351809 rs62485509 ENSG00000204959.4 ARHGEF34P 64843 2.64e-05 -0.626562 4e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 7e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 1e-08 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 7e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 2e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 4e-10 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 9.94e-09 -0.687083 1e-11 breast cancer 7_74696373 rs74910854 ENSG00000123965.13 PMS2P5 -197743 3.6e-07 1.17086 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 8.57e-10 0.973946 5e-06