DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_100414772 rs612683 ENSG00000079335.18 CDC14A 63038 3.52e-33 -0.36165 3e-07 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 4e-18 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 4e-18 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 4e-18 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 4e-18 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 4e-11 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 4e-11 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 4e-11 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 4e-11 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 1e-08 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 1e-08 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 1e-08 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 1e-08 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 2e-23 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 2e-23 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 2e-23 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 2e-23 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 2e-10 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 2e-10 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 2e-10 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 2e-10 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 5e-20 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 5e-20 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 5e-20 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 5e-20 breast cancer 1_10506158 rs616488 ENSG00000142657.20 PGD 107566 0.000113422 0.142225 9e-09 breast cancer 1_10506158 rs616488 ENSG00000054523.17 KIF1B 295353 2.18e-05 0.0785754 9e-09 breast cancer 1_10506158 rs616488 ENSG00000175279.21 CENPS 75375 1.68e-09 0.162908 9e-09 breast cancer 1_10506158 rs616488 ENSG00000142655.12 PEX14 31271 3.24e-06 0.109865 9e-09 breast cancer 1_10535965 rs2506889 ENSG00000175279.21 CENPS 105182 4.4e-14 0.210061 2e-20 breast cancer 1_10535965 rs2506889 ENSG00000142655.12 PEX14 61078 5.39e-07 0.122574 2e-20 breast cancer 1_10535965 rs2506889 ENSG00000142657.20 PGD 137373 4.27e-06 0.175355 2e-20 breast cancer 1_10536284 rs12375 ENSG00000175279.21 CENPS 105501 4.4e-14 0.210061 1e-05 breast cancer 1_10536284 rs12375 ENSG00000142657.20 PGD 137692 4.27e-06 0.175355 1e-05 breast cancer 1_10536284 rs12375 ENSG00000142655.12 PEX14 61397 5.39e-07 0.122574 1e-05 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 7.43e-05 0.160314 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 2.44e-08 0.198892 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 7.43e-05 0.160314 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 2.44e-08 0.198892 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 7.43e-05 0.160314 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 2.44e-08 0.198892 1e-06 breast cancer 1_119716347 rs666930 ENSG00000143067.4 ZNF697 68574 5.45e-05 0.134124 5e-08 breast cancer 1_119894128 rs35273427 ENSG00000134250.19 NOTCH2 -175498 0.000230296 0.171305 2e-07 breast cancer 1_121121848 rs369304377 ENSG00000273136.6 NBPF26 397925 7.38e-17 0.359039 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000273727.1 U1 766861 3.24e-07 0.221705 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 2.42e-14 0.320416 5e-08 breast cancer 1_155176305 rs4971059 ENSG00000169231.13 THBS3 -31676 3.24e-05 0.104474 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000231064.7 THBS3-AS1 -18699 5.81e-05 0.149339 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000169231.13 THBS3 -31676 3.24e-05 0.104474 2e-10 breast cancer 1_155176305 rs4971059 ENSG00000231064.7 THBS3-AS1 -18699 5.81e-05 0.149339 2e-10 breast cancer 1_155212052 rs2974935 ENSG00000160766.14 GBAP1 -15370 2.42e-05 -0.130387 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000225855.6 RUSC1-AS1 -109635 2.51e-06 0.126566 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000177628.15 GBA -32647 8.44e-06 -0.0926298 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000231064.7 THBS3-AS1 17048 1.56e-06 0.160703 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000169231.13 THBS3 4071 1.42e-10 0.144276 2e-07 breast cancer 1_155212373 rs2075570 ENSG00000231064.7 THBS3-AS1 17369 1.71e-06 0.159768 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000169231.13 THBS3 4392 9.92e-11 0.145146 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000225855.6 RUSC1-AS1 -109314 2.6e-06 0.126122 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000160766.14 GBAP1 -15049 2.79e-05 -0.129152 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000177628.15 GBA -32326 1.43e-05 -0.0900822 5e-06 breast cancer 1_155216951 rs1057941 ENSG00000169231.13 THBS3 8970 0.000139739 0.087902 2e-07 breast cancer 1_155302483 rs7524950 ENSG00000143622.10 RIT1 -608921 1.14e-11 -0.238615 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000203761.5 MSTO2P -443346 3.42e-08 -0.19338 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000225855.6 RUSC1-AS1 -19204 7.4e-15 0.231945 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000169231.13 THBS3 94502 1.31e-05 0.111335 3e-09 breast cancer 1_155446537 rs10796944 ENSG00000225855.6 RUSC1-AS1 124850 1.99e-08 0.183078 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000203761.5 MSTO2P -299292 1.83e-10 -0.240652 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000143622.10 RIT1 -464867 1.73e-08 -0.215505 7e-10 breast cancer 1_155587180 rs12091730 ENSG00000225855.6 RUSC1-AS1 265493 7.59e-08 0.175739 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000203761.5 MSTO2P -158649 1.31e-10 -0.242751 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000143622.10 RIT1 -324224 1.14e-08 -0.218373 2e-10 breast cancer 1_155697170 rs348196 ENSG00000236675.1 MTX1P1 466195 0.00018375 0.212346 2e-08 breast cancer 1_155697170 rs348196 ENSG00000203761.5 MSTO2P -48659 7.34e-08 -0.19521 2e-08 breast cancer 1_155697170 rs348196 ENSG00000143622.10 RIT1 -214234 1.93e-10 -0.232009 2e-08 breast cancer 1_155697170 rs348196 ENSG00000132676.15 DAP3 9210 1.62e-07 0.0905332 2e-08 breast cancer 1_155697170 rs348196 ENSG00000225855.6 RUSC1-AS1 375483 1.35e-10 0.199574 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 9.81e-05 0.0929903 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000242252.1 BGLAP -58710 3.22e-05 -0.111793 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 9.81e-05 0.0929903 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000242252.1 BGLAP -58710 3.22e-05 -0.111793 7e-07 breast cancer 1_16013277 rs1763604 ENSG00000179743.4 SPEN-AS1 176371 1.32e-05 0.102911 7e-09 breast cancer 1_16013277 rs1763604 ENSG00000186510.11 CLCNKA -5598 1.61e-39 -0.535694 7e-09 breast cancer 1_16013277 rs1763604 ENSG00000173641.17 HSPB7 -6317 6.92e-15 0.163564 7e-09 breast cancer 1_164720525 rs1387389 ENSG00000185630.18 PBX1 164941 3.67e-05 0.126662 4e-06 breast cancer 1_168127440 rs60504827 ENSG00000143158.10 MPC2 190400 5.72e-06 -0.109986 2e-07 breast cancer 1_203832121 rs59867004 ENSG00000182004.12 SNRPE -29482 8.6e-06 0.105149 1e-10 breast cancer 1_203938990 rs2810650 ENSG00000182004.12 SNRPE 77387 4.71e-05 0.102043 3e-09 breast cancer 1_204546897 rs2290854 ENSG00000198625.12 MDM4 30518 3.76e-06 -0.123914 1e-07 breast cancer 1_207903511 rs2724379 ENSG00000284237.1 LINC02767 -55781 6.41e-38 -0.506632 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000197429.10 IPP 167819 4.48e-10 -0.154427 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000234329.1 RPL7AP16 266643 2.74e-12 0.306174 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000117481.10 NSUN4 -421708 4.9e-06 0.13959 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000159596.6 TMEM69 231255 7.29e-05 0.109616 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000085998.13 POMGNT1 -279974 0.000120599 -0.0859777 2e-07 breast cancer 1_46135245 rs1707302 ENSG00000280670.2 CCDC163 635193 9.56e-05 -0.217046 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000232022.7 FAAHP1 -296884 0.000206767 -0.131101 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000117481.10 NSUN4 -204932 9.32e-09 -0.170029 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000159596.6 TMEM69 448031 0.000185184 -0.100664 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000234329.1 RPL7AP16 483419 1.47e-10 -0.274125 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000085998.13 POMGNT1 -63198 3.3e-05 0.0903175 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000197429.10 IPP 384595 7.56e-05 0.0963012 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000280670.2 CCDC163 635193 9.56e-05 -0.217046 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000232022.7 FAAHP1 -296884 0.000206767 -0.131101 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000117481.10 NSUN4 -204932 9.32e-09 -0.170029 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000159596.6 TMEM69 448031 0.000185184 -0.100664 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000234329.1 RPL7AP16 483419 1.47e-10 -0.274125 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000085998.13 POMGNT1 -63198 3.3e-05 0.0903175 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000197429.10 IPP 384595 7.56e-05 0.0963012 3e-10 breast cancer 1_7857016 rs707475 ENSG00000049245.12 VAMP3 85747 6.24e-05 -0.103986 1e-07 breast cancer 1_7857016 rs707475 ENSG00000116288.12 PARK7 -97275 1.58e-05 0.0888575 1e-07 breast cancer 1_8035440 rs225132 ENSG00000116288.12 PARK7 81149 1.54e-24 0.249414 3e-06 breast cancer 1_8326670 rs9628987; rs7535752 ENSG00000162426.14 SLC45A1 8844 1.82e-27 0.488349 5e-06 breast cancer 1_91555907 rs12134245 ENSG00000097046.12 CDC7 55014 1.04e-09 -0.202973 4e-06 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 2.32e-17 -0.379526 9e-10 breast cancer 10_27080233 rs7918232 ENSG00000283709.1 FAM238C 135815 1.76e-13 -0.355512 8e-06 breast cancer 10_27080233 rs7918232 ENSG00000120539.14 MASTL -75034 1.68e-35 0.600463 8e-06 breast cancer 10_5752689 rs55910451 ENSG00000057608.16 GDI2 -89443 1.58e-14 -0.179264 4e-07 breast cancer 10_62201406 rs66964413 ENSG00000181915.4 ADO -603451 1.57e-05 0.242195 5e-09 breast cancer 10_62303692 rs35419901 ENSG00000181915.4 ADO -501165 0.000109746 0.216806 8e-11 breast cancer 10_62719072 rs35306388 ENSG00000181915.4 ADO -85785 2.11e-05 0.288858 2e-10 breast cancer 10_92172529 rs72807246 ENSG00000228701.1 TNKS2-DT 374238 3.48e-14 0.45534 3e-06 breast cancer 10_92172529 rs72807246 ENSG00000198060.9 MARCHF5 -118634 0.000232907 -0.111793 3e-06 breast cancer 11_111636465 rs505372 ENSG00000137720.7 C11orf1 -242470 1.35e-05 0.128722 3e-06 breast cancer 11_111636465 rs505372 ENSG00000204381.11 LAYN 96185 4.5e-09 0.20132 3e-06 breast cancer 11_111765903 rs643506 ENSG00000150773.10 PIH1D2 -308182 8.63e-05 -0.137079 2e-07 breast cancer 11_111765903 rs643506 ENSG00000150768.15 DLAT -258911 7.94e-06 -0.0606462 2e-07 breast cancer 11_111765903 rs643506 ENSG00000204381.11 LAYN 225623 4.48e-05 -0.142816 2e-07 breast cancer 11_18642694 rs10832963 ENSG00000074319.12 TSG101 115462 1.51e-09 0.186609 9e-06 breast cancer 11_1871355 rs4980389 ENSG00000226416.1 MRPL23-AS1 -118565 4.74e-07 0.197887 4e-07 breast cancer 11_1874478 rs4980386 ENSG00000226416.1 MRPL23-AS1 -115442 2.47e-07 0.201646 9e-17 breast cancer 11_1877434 rs1973765 ENSG00000226416.1 MRPL23-AS1 -112486 2.78e-07 0.197768 1e-37 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 4.89e-05 -0.160112 9e-09 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 4.89e-05 -0.160112 3e-06 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 2e-11 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.22e-09 -0.241775 1e-10 breast cancer 11_1892909 rs576603 ENSG00000226416.1 MRPL23-AS1 -97011 2.68e-08 0.217824 2e-08 breast cancer 11_1920716 rs909116 ENSG00000130595.17 TNNT3 1154 1.02e-05 -0.091398 7e-07 breast cancer 11_1920716 rs909116 ENSG00000226416.1 MRPL23-AS1 -69204 4.93e-05 0.156841 7e-07 breast cancer 11_47325389 rs11039183 ENSG00000109919.9 MTCH2 -317234 1.74e-06 -0.0933442 6e-06 breast cancer 11_62126500 rs7937840 ENSG00000149503.12 INCENP 2527 1.01e-06 -0.121119 2e-09 breast cancer 11_62126500 rs7937840 ENSG00000149503.12 INCENP 2527 1.01e-06 -0.121119 1e-06 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 2.38e-16 -0.193549 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 2.17e-12 -0.183552 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 6.44e-09 -0.122153 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 5.28e-08 -0.253984 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 2.38e-16 -0.193549 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 2.17e-12 -0.183552 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 6.44e-09 -0.122153 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 5.28e-08 -0.253984 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 2.38e-16 -0.193549 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 2.17e-12 -0.183552 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 6.44e-09 -0.122153 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 5.28e-08 -0.253984 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 2.38e-16 -0.193549 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 2.17e-12 -0.183552 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 6.44e-09 -0.122153 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 5.28e-08 -0.253984 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 2.38e-16 -0.193549 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 2.17e-12 -0.183552 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000175376.8 EIF1AD -186483 6.44e-09 -0.122153 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 5.28e-08 -0.253984 9e-12 breast cancer 11_65935052 rs617791 ENSG00000175376.8 EIF1AD -67026 6.78e-17 -0.181833 7e-06 breast cancer 11_65935052 rs617791 ENSG00000248746.5 ACTN3 -611343 0.000193792 0.140674 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172500.12 FIBP 46513 3.87e-09 -0.147701 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172638.12 EFEMP2 61460 2.55e-06 -0.130375 7e-06 breast cancer 11_66301747 rs1783730 ENSG00000248746.5 ACTN3 -244648 0.000125353 0.13807 3e-07 breast cancer 11_66843174 rs7570 ENSG00000174080.10 CTSF 274333 0.00017453 0.0955967 8e-06 breast cancer 11_66843174 rs7570 ENSG00000248746.5 ACTN3 296779 6.91e-19 0.355406 8e-06 breast cancer 11_66843174 rs7570 ENSG00000174483.19 BBS1 332568 1.02e-05 -0.138231 8e-06 breast cancer 11_66843174 rs7570 ENSG00000174547.13 MRPL11 376436 6.4e-05 -0.0710849 8e-06 breast cancer 11_66843174 rs7570 ENSG00000254986.7 DPP3 363161 9.32e-07 0.097633 8e-06 breast cancer 11_69227030 rs7931342 ENSG00000162341.16 TPCN2 178133 3.05e-06 0.123358 4e-14 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 4.99e-33 0.385967 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177700.5 POLR2L -39528 1.31e-06 -0.101568 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177697.17 CD151 -29867 0.000116843 0.121407 3e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 4.99e-33 0.385967 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177700.5 POLR2L -39528 1.31e-06 -0.101568 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177697.17 CD151 -29867 0.000116843 0.121407 1e-12 breast cancer 12_111162330 rs11065822 ENSG00000111249.13 CUX2 128306 7.23e-06 -0.170784 6e-09 breast cancer 12_111162330 rs11065822 ENSG00000185847.7 LINC01405 225745 6.24e-19 0.195394 6e-09 breast cancer 12_111446804 rs3184504 ENSG00000198270.12 TMEM116 -566381 4.95e-06 0.15315 2e-06 breast cancer 12_111446804 rs3184504 ENSG00000185847.7 LINC01405 510219 2.76e-07 -0.11263 2e-06 breast cancer 12_111446804 rs3184504 ENSG00000198270.12 TMEM116 -566381 4.95e-06 0.15315 1e-06 breast cancer 12_111446804 rs3184504 ENSG00000185847.7 LINC01405 510219 2.76e-07 -0.11263 1e-06 breast cancer 12_111621753 rs11065979 ENSG00000198270.12 TMEM116 -391432 1.9e-05 -0.145788 5e-06 breast cancer 12_111621753 rs11065979 ENSG00000185847.7 LINC01405 685168 1.33e-05 0.0972119 5e-06 breast cancer 12_120997672 rs2464195 ENSG00000157895.11 C12orf43 -18830 9.83e-12 -0.180708 3e-08 breast cancer 12_27987344 rs1314084 ENSG00000087494.15 PTHLH 14639 2.76e-06 -0.231447 4e-08 breast cancer 12_28000060 rs805583 ENSG00000087494.15 PTHLH 27355 0.000158174 0.149696 3e-10 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 2e-12 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 4e-13 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 7e-18 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 2e-22 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 8e-31 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 8e-06 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 5e-34 breast cancer 12_28002147 rs10771399 ENSG00000087494.15 PTHLH 29442 1.99e-05 0.263594 2e-08 breast cancer 12_28013134 rs2590275 ENSG00000087494.15 PTHLH 40429 0.000101542 0.160619 5e-08 breast cancer 12_49251457 rs11168936 ENSG00000181418.7 DDN 252148 0.000157636 -0.131108 9e-07 breast cancer 12_49251457 rs11168936 ENSG00000123416.15 TUBA1B 120060 5.75e-06 -0.132662 9e-07 breast cancer 14_67599772 rs7149859 ENSG00000100564.8 PIGH -515 2.12e-05 -0.0899737 7e-07 breast cancer 15_49580388 rs8027730 ENSG00000140285.9 FGF7 157292 4.64e-14 -0.214758 3e-08 breast cancer 15_49580388 rs8027730 ENSG00000166262.15 FAM227B -40543 2.03e-17 0.237684 3e-08 breast cancer 15_50402109 rs4774565 ENSG00000104064.16 GABPB1 47151 1.54e-07 -0.149349 2e-06 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 2.16e-31 -0.458794 2e-06 breast cancer 15_51321455 rs1004983 ENSG00000186417.13 GLDN -20174 6.55e-18 0.351142 3e-06 breast cancer 15_51321455 rs1004983 ENSG00000081014.10 AP4E1 412783 1.76e-05 0.0829321 3e-06 breast cancer 15_74300521 rs12904134 ENSG00000140465.13 CYP1A1 -425089 1.42e-06 -0.2552 8e-06 breast cancer 15_74300521 rs12904134 ENSG00000167178.15 ISLR2 200210 1.06e-05 -0.168705 8e-06 breast cancer 15_74300521 rs12904134 ENSG00000129009.12 ISLR 126850 4.32e-06 -0.0802806 8e-06 breast cancer 15_74300521 rs12904134 ENSG00000138629.15 UBL7 -160661 0.000113613 0.0806478 8e-06 breast cancer 15_74843920 rs6938 ENSG00000140465.13 CYP1A1 118310 8.83e-08 -0.292528 9e-08 breast cancer 15_74843920 rs6938 ENSG00000140474.12 ULK3 723 9e-07 -0.164761 9e-08 breast cancer 15_74843920 rs6938 ENSG00000178718.6 RPP25 -113298 2.03e-07 -0.150382 9e-08 breast cancer 15_74843920 rs6938 ENSG00000103653.16 CSK 61863 8.51e-05 -0.115883 9e-08 breast cancer 15_74843920 rs6938 ENSG00000178761.14 FAM219B -63201 0.000138724 -0.121999 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000140465.13 CYP1A1 129381 5.97e-08 -0.29038 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 1.68e-05 -0.124238 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 3.69e-05 -0.117469 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178761.14 FAM219B -52130 1.25e-06 -0.151597 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 4.27e-09 -0.192287 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000140465.13 CYP1A1 129381 5.97e-08 -0.29038 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 1.68e-05 -0.124238 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 3.69e-05 -0.117469 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178761.14 FAM219B -52130 1.25e-06 -0.151597 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 4.27e-09 -0.192287 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000140465.13 CYP1A1 129381 5.97e-08 -0.29038 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 1.68e-05 -0.124238 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 3.69e-05 -0.117469 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178761.14 FAM219B -52130 1.25e-06 -0.151597 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 4.27e-09 -0.192287 4e-07 breast cancer 15_75516399 rs8027365 ENSG00000177971.8 IMP3 -131506 3.57e-06 -0.118401 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 2.19e-18 0.179732 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000169371.13 SNUPN -110070 1.12e-05 0.112139 1e-07 breast cancer 15_77977130 rs12906542 ENSG00000260776.5 GOLGA6FP 50284 1.74e-09 0.383831 7e-07 breast cancer 15_79777420 rs166870 ENSG00000136371.10 MTHFS -119959 1.63e-14 -0.359833 3e-07 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 1.09e-38 0.466261 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.08e-15 0.246654 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.08e-15 0.246654 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 1.08e-15 0.246654 8e-10 breast cancer 16_53769311 rs62048402 ENSG00000140718.20 FTO 67619 7.52e-08 0.142105 4e-23 breast cancer 16_53776774 rs7193144 ENSG00000140718.20 FTO 75082 2.11e-06 0.118732 3e-16 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 5e-08 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 6e-14 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 6e-07 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 3e-21 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 3e-07 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 2e-14 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 2e-10 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 7e-13 breast cancer 16_53779455 rs17817449 ENSG00000140718.20 FTO 77763 1.66e-06 0.12022 5e-24 breast cancer 16_53790314 rs62033406 ENSG00000140718.20 FTO 88622 4.16e-08 0.142455 3e-14 breast cancer 16_56387075 rs2432539 ENSG00000087263.16 OGFOD1 -64415 1.53e-39 0.319333 3e-10 breast cancer 16_56387075 rs2432539 ENSG00000167005.13 NUDT21 -65124 5.03e-05 0.113515 3e-10 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 1.47e-25 -0.353733 3e-10 breast cancer 16_56387075 rs2432539 ENSG00000087263.16 OGFOD1 -64415 1.53e-39 0.319333 4e-08 breast cancer 16_56387075 rs2432539 ENSG00000167005.13 NUDT21 -65124 5.03e-05 0.113515 4e-08 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 1.47e-25 -0.353733 4e-08 breast cancer 16_56497273 rs2303282 ENSG00000125124.11 BBS2 -23010 3.29e-27 -0.364511 3e-07 breast cancer 16_56497273 rs2303282 ENSG00000159461.14 AMFR 71735 0.000157303 0.0655689 3e-07 breast cancer 16_56497273 rs2303282 ENSG00000167005.13 NUDT21 45074 9.86e-06 0.123558 3e-07 breast cancer 16_56497273 rs2303282 ENSG00000087263.16 OGFOD1 45783 7.18e-39 0.316706 3e-07 breast cancer 16_71475893 rs8050871 ENSG00000167377.17 ZNF23 12798 3.48e-09 -0.187498 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000182149.20 IST1 -409340 3.48e-05 -0.119638 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000040199.18 PHLPP2 -248808 7.25e-06 -0.133787 3e-06 breast cancer 17_2195889 rs16952006 ENSG00000167720.12 SRR -107494 1.29e-13 -0.495199 3e-06 breast cancer 17_30560116 rs111780165 ENSG00000266733.5 TBC1D29P 3004 0.000449428 -0.329432 8e-08 breast cancer 17_30884649 rs7223535 ENSG00000172171.10 TEFM -22171 9.08e-05 0.10865 4e-10 breast cancer 17_30887862 rs113934718 ENSG00000172171.10 TEFM -18958 9.4e-05 0.109434 1e-08 breast cancer 17_30894259 rs62070652 ENSG00000172171.10 TEFM -12561 9.4e-05 0.109434 1e-06 breast cancer 17_30894259 rs62070652 ENSG00000172171.10 TEFM -12561 9.4e-05 0.109434 6e-09 breast cancer 17_35565049 rs2840044 ENSG00000006125.17 AP2B1 -21850 1.69e-29 0.340811 8e-06 breast cancer 17_35565049 rs2840044 ENSG00000270885.1 RASL10B -166600 1.22e-14 0.195309 8e-06 breast cancer 17_35565049 rs2840044 ENSG00000108733.9 PEX12 -13814 6.57e-08 -0.124899 8e-06 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 1.69e-78 1.13038 2e-08 breast cancer 17_45394123 rs4763 ENSG00000120071.13 KANSL1 -831266 8.6e-14 0.333142 2e-08 breast cancer 17_45394123 rs4763 ENSG00000176681.14 LRRC37A -898610 1.09e-10 0.428945 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 1.47e-85 1.07017 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 1.04e-95 0.77252 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 3.86e-85 1.03383 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 1.16e-48 -0.840647 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264589.2 MAPT-AS1 -501507 1.73e-15 -0.422356 2e-08 breast cancer 17_45394123 rs4763 ENSG00000225190.10 PLEKHM1 -96626 9.2e-33 0.323853 2e-08 breast cancer 17_45394123 rs4763 ENSG00000228696.8 ARL17B -967674 0.00033569 -0.247842 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000120071.13 KANSL1 -284267 3.27e-19 0.371823 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000120088.14 CRHR1 156842 1.12e-06 0.233455 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 7.38e-117 1.22206 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 1.13e-129 1.15756 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 4.04e-138 1.14195 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 1.94e-64 0.921046 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 2.03e-64 -0.887938 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000228696.8 ARL17B -420675 9.28e-06 -0.286737 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 4.53e-13 0.449513 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000225190.10 PLEKHM1 450373 2.96e-30 0.292637 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 4.31e-125 0.793183 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000108379.9 WNT3 -891936 0.000218217 0.206129 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264589.2 MAPT-AS1 45492 2.02e-13 -0.367199 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 1.4e-23 0.555053 8e-12 breast cancer 17_46751565 rs199533 ENSG00000120088.14 CRHR1 967285 1.97e-07 0.249416 5e-08 breast cancer 17_46751565 rs199533 ENSG00000264589.2 MAPT-AS1 855935 6.94e-11 -0.327836 5e-08 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 3.81e-156 1.22386 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 2.69e-60 0.897485 5e-08 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 3e-11 0.414646 5e-08 breast cancer 17_46751565 rs199533 ENSG00000120071.13 KANSL1 526176 8.08e-22 0.397103 5e-08 breast cancer 17_46751565 rs199533 ENSG00000108379.9 WNT3 -81493 7.92e-07 0.274518 5e-08 breast cancer 17_46751565 rs199533 ENSG00000228696.8 ARL17B 389768 2.4e-05 -0.273766 5e-08 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 8.12e-25 0.570032 5e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 1.9e-13 0.44055 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 5.72e-52 0.812344 2e-08 breast cancer 17_46788237 rs199498 ENSG00000120071.13 KANSL1 562848 1.07e-12 0.288493 2e-08 breast cancer 17_46788237 rs199498 ENSG00000108379.9 WNT3 -44821 7e-09 0.309192 2e-08 breast cancer 17_46788237 rs199498 ENSG00000264589.2 MAPT-AS1 892607 1.83e-08 -0.273767 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 2e-86 0.972733 2e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 1.19e-19 0.488818 2e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 3.16e-12 -0.265926 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 3.16e-12 -0.265926 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 3.16e-12 -0.265926 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 3.16e-12 -0.265926 8e-09 breast cancer 17_55132413 rs2787486 ENSG00000166260.10 COX11 163649 0.000126874 0.0769656 6e-29 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 1.58e-09 -0.221889 6e-29 breast cancer 17_55132413 rs2787486 ENSG00000166260.10 COX11 163649 0.000126874 0.0769656 2e-34 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 1.58e-09 -0.221889 2e-34 breast cancer 17_55135212 rs2628317 ENSG00000166263.13 STXBP4 166426 3.85e-09 -0.235084 4e-16 breast cancer 17_68904663 rs36059695 ENSG00000141338.13 ABCA8 -50729 7.11e-10 0.548739 6e-08 breast cancer 17_79807926 rs745570 ENSG00000141582.14 CBX4 -31503 2.42e-05 -0.132576 6e-06 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 6.2e-07 -0.168818 6e-06 breast cancer 17_79807926 rs745570 ENSG00000141582.14 CBX4 -31503 2.42e-05 -0.132576 5e-07 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 6.2e-07 -0.168818 5e-07 breast cancer 17_79807926 rs745570 ENSG00000141582.14 CBX4 -31503 2.42e-05 -0.132576 1e-09 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 6.2e-07 -0.168818 1e-09 breast cancer 17_79807926 rs745570 ENSG00000141582.14 CBX4 -31503 2.42e-05 -0.132576 4e-10 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 6.2e-07 -0.168818 4e-10 breast cancer 17_81211408 rs9913021 ENSG00000224877.3 NDUFAF8 -27831 1.23e-05 -0.086 2e-06 breast cancer 17_82597601 rs62079673 ENSG00000141580.15 WDR45B -50952 5.48e-13 0.197458 1e-06 breast cancer 17_82946434 rs898097 ENSG00000175711.8 B3GNTL1 -105376 0.000249164 -0.126941 2e-06 breast cancer 17_82946434 rs898097 ENSG00000141542.10 RAB40B 247706 9.93e-09 0.219831 2e-06 breast cancer 17_82946434 rs898097 ENSG00000141560.14 FN3KRP 229751 1.2e-27 -0.379746 2e-06 breast cancer 18_45304061 rs12455117 ENSG00000152217.16 SETBP1 623888 0.000147698 -0.0985038 2e-08 breast cancer 18_45304061 rs12455117 ENSG00000152217.16 SETBP1 623888 0.000147698 -0.0985038 4e-08 breast cancer 18_45309052 rs11082442 ENSG00000152217.16 SETBP1 628879 6.5e-05 -0.105083 3e-11 breast cancer 19_11313027 rs322144 ENSG00000105520.10 PLPPR2 -42359 5.28e-07 0.192508 7e-09 breast cancer 19_12846836 rs117758012 ENSG00000179115.10 FARSA -87201 2.03e-06 0.148897 5e-07 breast cancer 19_13047463 rs78269692 ENSG00000179115.10 FARSA 113426 3.99e-06 0.146028 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 2e-06 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 2e-06 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 2e-06 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 4e-13 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 4e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 4e-13 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 1e-12 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 1e-12 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 1e-12 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 7e-21 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 7e-21 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 7e-21 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 9e-13 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 9e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 9e-13 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 5.24e-16 -0.191869 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 2e-09 -0.245495 2e-09 breast cancer 19_17278895 rs8170 ENSG00000099330.8 OCEL1 52691 2.4e-20 0.344882 2e-09 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 7.84e-25 0.299509 2e-09 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 7.97e-26 -0.239151 2e-09 breast cancer 19_17279482 rs4808075 ENSG00000105393.15 BABAM1 12132 3.64e-05 -0.0842771 2e-09 breast cancer 19_17279482 rs4808075 ENSG00000099330.8 OCEL1 53278 2.04e-11 0.219736 2e-09 breast cancer 19_17279482 rs4808075 ENSG00000127220.5 ABHD8 -30754 1.36e-27 0.272714 2e-09 breast cancer 19_17279482 rs4808075 ENSG00000105393.15 BABAM1 12132 3.64e-05 -0.0842771 4e-07 breast cancer 19_17279482 rs4808075 ENSG00000099330.8 OCEL1 53278 2.04e-11 0.219736 4e-07 breast cancer 19_17279482 rs4808075 ENSG00000127220.5 ABHD8 -30754 1.36e-27 0.272714 4e-07 breast cancer 19_17282085 rs8100241 ENSG00000127220.5 ABHD8 -28151 4.3e-17 -0.194409 4e-08 breast cancer 19_17282085 rs8100241 ENSG00000099330.8 OCEL1 55881 2.21e-17 -0.249417 4e-08 breast cancer 19_17282085 rs8100241 ENSG00000130312.6 MRPL34 -10747 1.95e-06 0.0897971 4e-08 breast cancer 19_17283116 rs56069439 ENSG00000105393.15 BABAM1 15766 4.34e-05 -0.0838338 1e-32 breast cancer 19_17283116 rs56069439 ENSG00000099330.8 OCEL1 56912 1.47e-11 0.222266 1e-32 breast cancer 19_17283116 rs56069439 ENSG00000127220.5 ABHD8 -27120 2.71e-28 0.277303 1e-32 breast cancer 19_17283116 rs56069439 ENSG00000105393.15 BABAM1 15766 4.34e-05 -0.0838338 9e-09 breast cancer 19_17283116 rs56069439 ENSG00000099330.8 OCEL1 56912 1.47e-11 0.222266 9e-09 breast cancer 19_17283116 rs56069439 ENSG00000127220.5 ABHD8 -27120 2.71e-28 0.277303 9e-09 breast cancer 19_17283116 rs56069439 ENSG00000105393.15 BABAM1 15766 4.34e-05 -0.0838338 8e-19 breast cancer 19_17283116 rs56069439 ENSG00000099330.8 OCEL1 56912 1.47e-11 0.222266 8e-19 breast cancer 19_17283116 rs56069439 ENSG00000127220.5 ABHD8 -27120 2.71e-28 0.277303 8e-19 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 1.64e-06 0.0902685 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000099330.8 OCEL1 57111 1.38e-17 -0.250479 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000127220.5 ABHD8 -26921 1.6e-17 -0.196565 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 1.64e-06 0.0902685 2e-06 breast cancer 19_17283315 rs2363956 ENSG00000099330.8 OCEL1 57111 1.38e-17 -0.250479 2e-06 breast cancer 19_17283315 rs2363956 ENSG00000127220.5 ABHD8 -26921 1.6e-17 -0.196565 2e-06 breast cancer 19_17290595 rs67397200 ENSG00000127220.5 ABHD8 -19641 8.65e-28 0.27283 3e-17 breast cancer 19_17290595 rs67397200 ENSG00000099330.8 OCEL1 64391 1.11e-11 0.221866 3e-17 breast cancer 19_17290595 rs67397200 ENSG00000105393.15 BABAM1 23245 1.49e-05 -0.0880474 3e-17 breast cancer 19_17290595 rs67397200 ENSG00000127220.5 ABHD8 -19641 8.65e-28 0.27283 3e-37 breast cancer 19_17290595 rs67397200 ENSG00000099330.8 OCEL1 64391 1.11e-11 0.221866 3e-37 breast cancer 19_17290595 rs67397200 ENSG00000105393.15 BABAM1 23245 1.49e-05 -0.0880474 3e-37 breast cancer 19_17290595 rs67397200 ENSG00000127220.5 ABHD8 -19641 8.65e-28 0.27283 2e-08 breast cancer 19_17290595 rs67397200 ENSG00000099330.8 OCEL1 64391 1.11e-11 0.221866 2e-08 breast cancer 19_17290595 rs67397200 ENSG00000105393.15 BABAM1 23245 1.49e-05 -0.0880474 2e-08 breast cancer 19_18422832 rs7258465 ENSG00000130511.15 SSBP4 3968 1.66e-27 -0.282042 3e-28 breast cancer 19_18422832 rs7258465 ENSG00000105655.18 ISYNA1 -15469 3e-06 0.128609 3e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.26e-25 -0.271693 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000105655.18 ISYNA1 22030 6.61e-07 0.136349 4e-15 breast cancer 19_18522945 rs172032 ENSG00000269019.1 HOMER3-AS1 -423136 0.000125966 0.183076 1e-16 breast cancer 19_18522945 rs172032 ENSG00000006016.10 CRLF1 -84796 0.000143911 0.12404 1e-16 breast cancer 19_18522945 rs172032 ENSG00000130511.15 SSBP4 104081 4.96e-25 -0.256211 1e-16 breast cancer 19_18522945 rs172032 ENSG00000051128.18 HOMER3 -418316 6.35e-06 0.18686 1e-16 breast cancer 19_19417997 rs1469713 ENSG00000250067.11 YJEFN3 -111367 1.1e-06 -0.10391 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000129933.20 MAU2 97152 2.53e-24 -0.201271 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000213996.12 TM6SF2 144606 4.05e-05 0.194856 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000064547.13 LPAR2 -210933 5.54e-08 -0.20693 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000105705.15 SUGP1 97317 3.92e-11 -0.16495 1e-10 breast cancer 19_19434887 rs2965183 ENSG00000129933.20 MAU2 114042 2.15e-24 -0.202266 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 9.61e-07 -0.104848 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 5.41e-05 0.192384 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000105705.15 SUGP1 114207 1.84e-11 -0.168203 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000064547.13 LPAR2 -194043 6.57e-08 -0.206507 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000129933.20 MAU2 114042 2.15e-24 -0.202266 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 9.61e-07 -0.104848 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 5.41e-05 0.192384 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000105705.15 SUGP1 114207 1.84e-11 -0.168203 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000064547.13 LPAR2 -194043 6.57e-08 -0.206507 1e-11 breast cancer 19_19535463 rs2304098 ENSG00000213996.12 TM6SF2 262072 5.72e-05 0.191581 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000250067.11 YJEFN3 6099 6.06e-07 -0.106631 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000064547.13 LPAR2 -93467 3.92e-08 -0.20974 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000105705.15 SUGP1 214783 5.25e-12 -0.172399 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000129933.20 MAU2 214618 2.43e-24 -0.201856 2e-11 breast cancer 19_2226677 rs3815308 ENSG00000104899.7 AMH -22632 1.83e-08 0.201954 7e-06 breast cancer 19_29786822 rs113701136 ENSG00000105173.13 CCNE1 -25076 7.19e-05 -0.0992051 2e-07 breast cancer 19_29786822 rs113701136 ENSG00000105173.13 CCNE1 -25076 7.19e-05 -0.0992051 7e-09 breast cancer 19_43484866 rs66849333 ENSG00000176531.10 PHLDB3 -20069 7.55e-07 0.274816 1e-06 breast cancer 19_43779080 rs1685191 ENSG00000204920.10 ZNF155 -188782 1.27e-05 -0.177907 4e-20 breast cancer 19_43779080 rs1685191 ENSG00000176222.8 ZNF404 -104971 9.78e-20 -0.276339 4e-20 breast cancer 19_43779080 rs1685191 ENSG00000167637.16 ZNF283 -48212 2.31e-05 -0.155069 4e-20 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 1.17e-19 -0.273608 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000167637.16 ZNF283 -44931 4.22e-06 -0.166997 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.84e-09 -0.238689 1e-16 breast cancer 19_43919418 rs375066 ENSG00000167637.16 ZNF283 92126 7.03e-08 -0.1978 2e-14 breast cancer 19_43919418 rs375066 ENSG00000204920.10 ZNF155 -48444 3.65e-06 -0.189656 2e-14 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 3.3e-46 -0.416794 2e-14 breast cancer 19_51869723 rs10411161 ENSG00000161551.14 ZNF577 -18253 2.54e-16 -0.371533 7e-06 breast cancer 19_51869723 rs10411161 ENSG00000198093.10 ZNF649 -35317 1.3e-14 -0.39427 7e-06 breast cancer 2_171513371 rs11680449 ENSG00000071967.11 CYBRD1 -8876 3.78e-06 0.0992872 4e-09 breast cancer 2_171568284 rs11675683 ENSG00000071967.11 CYBRD1 46037 1.41e-14 0.152881 4e-08 breast cancer 2_189205442 rs73034872 ENSG00000233996.1 KDM3AP1 -282550 7.86e-05 -0.44585 8e-06 breast cancer 2_189440322 rs75116627 ENSG00000233996.1 KDM3AP1 -47670 4.92e-05 -0.686114 1e-06 breast cancer 2_201003582 rs112257290 ENSG00000064012.21 CASP8 -229861 2.73e-05 -0.32145 2e-07 breast cancer 2_201003582 rs112257290 ENSG00000115993.12 TRAK2 -447997 3.52e-06 -0.280756 2e-07 breast cancer 2_201258707 rs3769821 ENSG00000155749.12 FLACC1 -98691 2.23e-09 -0.223824 4e-18 breast cancer 2_201258707 rs3769821 ENSG00000064012.21 CASP8 25264 4.62e-20 0.30223 4e-18 breast cancer 2_201279205 rs10931936 ENSG00000064012.21 CASP8 45762 8.84e-18 0.305712 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 3.19e-08 -0.223196 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000240344.8 PPIL3 389902 6.18e-05 -0.173986 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000064012.21 CASP8 54912 3.86e-29 0.35715 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 1.27e-16 -0.300611 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000240344.8 PPIL3 399052 6.5e-05 0.15844 3e-09 breast cancer 2_201288502 rs700635 ENSG00000240344.8 PPIL3 399199 5.06e-05 -0.17597 5e-16 breast cancer 2_201288502 rs700635 ENSG00000064012.21 CASP8 55059 2.13e-17 0.302261 5e-16 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 1.43e-08 -0.228665 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.37e-08 -0.228929 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 4.75e-05 -0.176591 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 6.43e-17 0.297859 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.37e-08 -0.228929 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 4.75e-05 -0.176591 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 6.43e-17 0.297859 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.37e-08 -0.228929 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 4.75e-05 -0.176591 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 6.43e-17 0.297859 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.37e-08 -0.228929 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 4.75e-05 -0.176591 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 6.43e-17 0.297859 9e-14 breast cancer 2_201384985 rs2714486 ENSG00000064012.21 CASP8 151542 1.81e-10 -0.276781 7e-10 breast cancer 2_201384985 rs2714486 ENSG00000155749.12 FLACC1 27587 0.000170255 0.183821 7e-10 breast cancer 2_201502866 rs77688320 ENSG00000064012.21 CASP8 269423 4.51e-07 -0.238094 3e-09 breast cancer 2_24748307 rs6710503 ENSG00000084676.15 NCOA1 256393 0.000308599 0.0922431 5e-06 breast cancer 2_24748307 rs6710503 ENSG00000115138.10 POMC -420596 2.36e-05 0.231559 5e-06 breast cancer 2_25222417 rs113953597 ENSG00000115138.10 POMC 53514 7.73e-05 0.214842 1e-08 breast cancer 2_28896719 rs67073037 ENSG00000163811.11 WDR43 2076 4.46e-06 0.084375 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 1.74e-18 0.248955 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 0.000114509 -0.105509 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000163811.11 WDR43 2076 4.46e-06 0.084375 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 1.74e-18 0.248955 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 0.000114509 -0.105509 5e-09 breast cancer 2_28897867 rs4577244 ENSG00000163811.11 WDR43 3224 1.75e-06 0.0874556 2e-09 breast cancer 2_28897867 rs4577244 ENSG00000213639.9 PPP1CB 146227 0.000174052 -0.102249 2e-09 breast cancer 2_28897867 rs4577244 ENSG00000171103.10 TRMT61B 27566 2.64e-18 0.246584 2e-09 breast cancer 2_38150263 rs184577 ENSG00000138061.11 CYP1B1 40361 3.44e-05 -0.149824 4e-06 breast cancer 2_69207095 rs12474538 ENSG00000169599.12 NFU1 -230533 3.61e-05 -0.113163 9e-08 breast cancer 2_69900097 rs6716937 ENSG00000124380.10 SNRNP27 6537 2.18e-39 -0.384242 4e-07 breast cancer 2_69900097 rs6716937 ENSG00000087338.4 GMCL1 70455 2.21e-14 -0.224227 4e-07 breast cancer 2_69945455 rs6756513 ENSG00000115998.7 C2orf42 -245616 5.22e-05 -0.136687 4e-07 breast cancer 2_69945455 rs6756513 ENSG00000087338.4 GMCL1 115813 5.82e-14 -0.260634 4e-07 breast cancer 20_34000289 rs2284378 ENSG00000131067.16 GGT7 -872571 0.000410762 0.111349 1e-08 breast cancer 20_34000289 rs2284378 ENSG00000101460.12 MAP1LC3A -546565 0.000332645 0.103612 1e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 0.000248149 0.105718 2e-08 breast cancer 20_34002002 rs2300206 ENSG00000131067.16 GGT7 -870858 0.000388813 0.111742 2e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 0.000248149 0.105718 6e-06 breast cancer 20_34002002 rs2300206 ENSG00000131067.16 GGT7 -870858 0.000388813 0.111742 6e-06 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 0.000264539 0.101668 3e-09 breast cancer 20_34131991 rs11907546 ENSG00000131067.16 GGT7 -740869 0.000276857 0.110604 3e-09 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 0.000264539 0.101668 3e-06 breast cancer 20_34131991 rs11907546 ENSG00000131067.16 GGT7 -740869 0.000276857 0.110604 3e-06 breast cancer 20_53680310 rs13039563 ENSG00000171940.13 ZNF217 70403 4.01e-05 -0.148144 1e-09 breast cancer 20_53680310 rs13039563 ENSG00000171940.13 ZNF217 70403 4.01e-05 -0.148144 3e-09 breast cancer 21_46360308 rs9808759 ENSG00000160282.13 FTCD 204741 0.000191438 -0.301144 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 3.83e-06 -0.369043 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.37e-27 -0.931301 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000160282.13 FTCD 204741 0.000191438 -0.301144 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 3.83e-06 -0.369043 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.37e-27 -0.931301 6e-09 breast cancer 22_30027471 rs12537 ENSG00000100296.13 THOC5 473217 0.000183427 0.107098 9e-07 breast cancer 22_38962032 rs12628403 ENSG00000128383.12 APOBEC3A 9291 6.52e-07 -0.429473 3e-17 breast cancer 22_38962032 rs12628403 ENSG00000128383.12 APOBEC3A 9291 6.52e-07 -0.429473 9e-14 breast cancer 22_38962032 rs12628403 ENSG00000128383.12 APOBEC3A 9291 6.52e-07 -0.429473 4e-06 breast cancer 22_40143521 rs12483853 ENSG00000196588.14 MRTFA -493181 0.00011341 -0.175715 1e-18 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 2e-06 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 4e-14 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 2e-11 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 2e-06 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 2e-20 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 5e-34 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 4e-34 breast cancer 22_40480230 rs6001930 ENSG00000196588.14 MRTFA -156472 1.81e-06 -0.22395 9e-19 breast cancer 22_40481631 rs6001932 ENSG00000196588.14 MRTFA -155071 2.7e-06 -0.213575 7e-09 breast cancer 22_40600363 rs17002034 ENSG00000196588.14 MRTFA -36339 4.92e-07 -0.254417 6e-11 breast cancer 22_40619879 rs5995881 ENSG00000196588.14 MRTFA -16823 2.81e-07 -0.243345 4e-16 breast cancer 22_40623944 rs6001982 ENSG00000196588.14 MRTFA -12758 1.23e-07 -0.254193 1e-34 breast cancer 22_41323244 rs73176670 ENSG00000196236.12 XPNPEP3 466147 7.97e-05 -0.240722 1e-08 breast cancer 22_41642782 rs73161324 ENSG00000100138.13 SNU13 -47722 0.000204422 0.125748 2e-09 breast cancer 22_42745087 rs4820477 ENSG00000128274.15 A4GALT 23789 1.39e-29 -0.324135 9e-07 breast cancer 22_43072659 rs28599928 ENSG00000100271.16 TTLL1 -16769 1.39e-05 -0.192994 2e-06 breast cancer 3_100004736 rs9833888 ENSG00000206535.7 LNP1 -396663 0.000258983 0.119085 3e-10 breast cancer 3_100004736 rs9833888 ENSG00000036054.12 TBC1D23 -256264 6.32e-08 -0.195722 3e-10 breast cancer 3_100004736 rs9833888 ENSG00000206535.7 LNP1 -396663 0.000258983 0.119085 5e-10 breast cancer 3_100004736 rs9833888 ENSG00000036054.12 TBC1D23 -256264 6.32e-08 -0.195722 5e-10 breast cancer 3_100105841 rs9837602 ENSG00000036054.12 TBC1D23 -155159 6.66e-08 -0.196203 1e-09 breast cancer 3_100105841 rs9837602 ENSG00000206535.7 LNP1 -295558 0.000231746 0.1205 1e-09 breast cancer 3_155285814 rs4679741 ENSG00000240045.1 STRIT1 -7877 0.000181443 -0.0770167 2e-07 breast cancer 3_156645453 rs2136690 ENSG00000240875.5 LINC00886 -171609 2.87e-16 -0.33233 4e-06 breast cancer 3_156927968 rs7637701 ENSG00000240875.5 LINC00886 110906 5.18e-36 -0.486981 1e-06 breast cancer 3_190056667 rs9882792 ENSG00000090530.9 P3H2 -65770 5.73e-08 -0.241452 2e-06 breast cancer 3_27145111 rs1357245 ENSG00000033867.16 SLC4A7 -339309 0.000192154 -0.10406 2e-07 breast cancer 3_27285723 rs481519 ENSG00000033867.16 SLC4A7 -198697 2.46e-05 0.118413 2e-09 breast cancer 3_27302153 rs653465 ENSG00000033867.16 SLC4A7 -182267 5.26e-05 0.113039 5e-12 breast cancer 3_27312225 rs552647 ENSG00000033867.16 SLC4A7 -172195 4.16e-05 0.114416 3e-20 breast cancer 3_27327393 rs3920005 ENSG00000033867.16 SLC4A7 -157027 1.43e-05 -0.120855 8e-14 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 2e-30 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 4e-23 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 3e-30 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 5e-57 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 5e-22 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 5e-62 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 2e-08 breast cancer 3_27374522 rs4973768 ENSG00000033867.16 SLC4A7 -109898 6.28e-07 0.135102 6e-07 breast cancer 3_27468223 rs7619833 ENSG00000033867.16 SLC4A7 -16197 8.31e-05 0.104206 3e-45 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 1.03e-11 -0.319265 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 2.6e-07 0.265012 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 1.03e-11 -0.319265 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 2.6e-07 0.265012 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 1.03e-11 -0.319265 6e-15 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 2.6e-07 0.265012 6e-15 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 1.03e-11 -0.319265 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 2.6e-07 0.265012 7e-16 breast cancer 3_46846708 rs56387622 ENSG00000178038.16 ALS2CL 153004 7.54e-05 -0.182344 5e-19 breast cancer 3_46846708 rs56387622 ENSG00000188086.13 PRSS45P 101953 3.99e-09 0.292689 5e-19 breast cancer 3_47364189 rs146331761 ENSG00000178038.16 ALS2CL 670485 0.00010735 -0.308701 5e-07 breast cancer 3_47364189 rs146331761 ENSG00000114648.11 KLHL18 76969 2.3e-05 -0.337561 5e-07 breast cancer 3_49129027 rs61729152 ENSG00000164045.11 CDC25A 940625 0.000313894 0.615963 6e-06 breast cancer 3_49129027 rs61729152 ENSG00000213689.11 TREX1 663216 0.000252618 -0.443165 6e-06 breast cancer 3_49129027 rs61729152 ENSG00000114268.11 PFKFB4 567301 0.000126836 0.361394 6e-06 breast cancer 3_64074452 rs1450985 ENSG00000163636.10 PSMD6 50442 3.84e-05 0.0503235 6e-08 breast cancer 3_86988393 rs13066793 ENSG00000206538.8 VGLL3 -2726 7.59e-07 -0.247864 1e-09 breast cancer 4_103450498 rs10016947 ENSG00000164039.14 BDH2 350615 7.7e-06 0.282818 9e-06 breast cancer 4_105163621 rs9790517 ENSG00000168769.13 TET2 17746 4.41e-05 0.13632 5e-11 breast cancer 4_105163621 rs9790517 ENSG00000168769.13 TET2 17746 4.41e-05 0.13632 2e-09 breast cancer 4_105163621 rs9790517 ENSG00000168769.13 TET2 17746 4.41e-05 0.13632 7e-06 breast cancer 4_105163621 rs9790517 ENSG00000168769.13 TET2 17746 4.41e-05 0.13632 4e-08 breast cancer 4_105163621 rs9790517 ENSG00000168769.13 TET2 17746 4.41e-05 0.13632 1e-09 breast cancer 4_105274384 rs2726492 ENSG00000168769.13 TET2 128509 3e-07 -0.174366 4e-10 breast cancer 4_105435604 rs77928427 ENSG00000138777.19 PPA2 -38477 3.96e-08 -0.126311 3e-08 breast cancer 4_121215608 rs4455437; rs921551 ENSG00000173376.13 NDNF 142587 3.45e-05 0.138309 2e-06 breast cancer 4_1985245 rs495367 ENSG00000185049.14 NELFA -56658 6.68e-07 0.0980391 2e-08 breast cancer 4_38814717 rs6815814 ENSG00000197712.11 FAM114A1 -52960 5.59e-05 0.156224 1e-11 breast cancer 4_38814717 rs6815814 ENSG00000197712.11 FAM114A1 -52960 5.59e-05 0.156224 6e-13 breast cancer 4_57013626 rs4865169 ENSG00000047315.15 POLR2B 34802 5.84e-07 -0.0796495 7e-06 breast cancer 4_57013626 rs4865169 ENSG00000128040.10 SPINK2 191884 9.35e-06 -0.187304 7e-06 breast cancer 4_57013626 rs4865169 ENSG00000084092.6 NOA1 34987 4.51e-07 0.112218 7e-06 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 6.43e-78 0.686633 9e-06 breast cancer 5_128227188 rs36715 ENSG00000245937.7 SLC12A2-DT 144016 9.12e-21 0.334802 4e-06 breast cancer 5_132304843 rs6860806 ENSG00000233006.6 MIR3936HG -64805 5.34e-23 0.294091 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 3.49e-09 -0.112431 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000197208.5 SLC22A4 10400 2.73e-10 -0.158154 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000263597.1 MIR3936 -60756 2.87e-05 0.180064 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000125347.13 IRF1 -185955 6.65e-05 -0.135198 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 4.38e-06 -0.0944792 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000233006.6 MIR3936HG -64805 5.34e-23 0.294091 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 3.49e-09 -0.112431 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197208.5 SLC22A4 10400 2.73e-10 -0.158154 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000263597.1 MIR3936 -60756 2.87e-05 0.180064 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000125347.13 IRF1 -185955 6.65e-05 -0.135198 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 4.38e-06 -0.0944792 8e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.13e-25 -0.316838 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 1.43e-06 0.124692 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 0.000127348 0.133298 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 8.63e-08 0.112648 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000263597.1 MIR3936 100656 0.000173261 -0.16602 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.13e-25 -0.316838 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 1.43e-06 0.124692 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 0.000127348 0.133298 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 8.63e-08 0.112648 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000263597.1 MIR3936 100656 0.000173261 -0.16602 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.13e-25 -0.316838 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 1.43e-06 0.124692 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 0.000127348 0.133298 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 8.63e-08 0.112648 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000263597.1 MIR3936 100656 0.000173261 -0.16602 1e-08 breast cancer 5_132497907 rs736801 ENSG00000131435.12 PDLIM4 240236 2.44e-07 -0.111261 8e-08 breast cancer 5_132497907 rs736801 ENSG00000233006.6 MIR3936HG 128259 1.56e-17 0.269067 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197208.5 SLC22A4 203464 0.000197136 -0.0989191 8e-08 breast cancer 5_133071366 rs6596100 ENSG00000170606.14 HSPA4 19404 3.38e-23 0.280403 8e-09 breast cancer 5_133071366 rs6596100 ENSG00000170606.14 HSPA4 19404 3.38e-23 0.280403 2e-08 breast cancer 5_149053986 rs250677 ENSG00000169247.11 SH3TC2 -9177 1.78e-06 0.215578 8e-06 breast cancer 5_154976135 rs6890610 ENSG00000155508.13 CNOT8 118582 5.83e-12 -0.179905 6e-06 breast cancer 5_154976135 rs6890610 ENSG00000155506.16 LARP1 263233 9.47e-06 0.0813071 6e-06 breast cancer 5_44145829 rs11749176 ENSG00000112992.16 NNT 543137 5.96e-05 0.0869862 9e-10 breast cancer 5_44662413 rs4415084 ENSG00000249203.1 LINC02224 152131 0.000227927 -0.133667 3e-09 breast cancer 5_44662413 rs4415084 ENSG00000249203.1 LINC02224 152131 0.000227927 -0.133667 8e-11 breast cancer 5_44701316 rs714130 ENSG00000249203.1 LINC02224 191034 0.000341704 -0.129597 7e-09 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 3e-26 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 5e-32 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 1e-30 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 1e-80 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 2e-37 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 3e-09 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 6e-73 breast cancer 5_44706396 rs10941679 ENSG00000249203.1 LINC02224 196114 0.000177953 -0.157473 8e-25 breast cancer 5_44874903 rs7716600 ENSG00000249203.1 LINC02224 364621 0.000402277 0.152819 7e-08 breast cancer 5_44874903 rs7716600 ENSG00000249203.1 LINC02224 364621 0.000402277 0.152819 7e-07 breast cancer 5_44926416 rs10043344 ENSG00000249203.1 LINC02224 416134 0.000127689 0.137966 5e-10 breast cancer 5_45653810 rs2589161 ENSG00000164588.6 HCN1 -42688 0.000245147 0.0862696 3e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 7e-20 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 1e-39 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 1e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 3e-36 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 3e-27 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 4.78e-09 0.244733 5e-09 breast cancer 5_56737113 rs1862626 ENSG00000155542.11 SETD9 -172147 2.76e-09 0.24685 4e-12 breast cancer 5_56926293 rs11957276 ENSG00000155542.11 SETD9 17033 1.67e-09 0.281741 5e-11 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 1.51e-37 0.475101 2e-12 breast cancer 5_81820020 rs72774916 ENSG00000152348.15 ATG10 -152005 9.31e-05 0.273757 2e-08 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 2.97e-73 0.779501 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 6.65e-43 -0.358764 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 9.97e-63 0.589762 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 2.4e-66 -0.737214 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 1.51e-62 -0.579513 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 -117038 9.86e-43 0.352313 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 -37235 7.03e-65 -0.593265 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.35e-44 0.362153 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 3.58e-65 -0.73816 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.03e-65 -0.593265 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.35e-44 0.362153 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 3.58e-65 -0.73816 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.03e-65 -0.593265 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.35e-44 0.362153 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 3.58e-65 -0.73816 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.03e-65 -0.593265 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.35e-44 0.362153 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 3.58e-65 -0.73816 2e-12 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 1.53e-35 -0.322939 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 1.81e-44 0.499269 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 5.01e-34 0.548811 2e-06 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.31e-08 -0.242576 8e-10 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.31e-08 -0.242576 4e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.31e-08 -0.242576 2e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 1.31e-08 -0.242576 3e-12 breast cancer 6_13713134 rs418053 ENSG00000010017.12 RANBP9 1570 2.22e-07 -0.0966643 1e-13 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 4.31e-07 -0.0932026 4e-10 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 4.31e-07 -0.0932026 3e-07 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 4.31e-07 -0.0932026 8e-09 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 4.31e-07 -0.0932026 3e-14 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 4.31e-07 -0.0932026 8e-13 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 1.4e-36 -1.11628 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 9.31e-36 -1.11181 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 2.09e-44 -1.119 2e-09 breast cancer 6_26175638 rs17598658 ENSG00000224843.6 LINC00240 -781354 0.000219891 0.297469 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000182952.4 HMGN4 -75059 0.000362792 -0.176921 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 1.02e-56 -1.20058 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000224843.6 LINC00240 -493646 0.00016763 0.292318 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 3.01e-55 -1.20998 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000224843.6 LINC00240 36509 0.000581673 0.272548 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 8.37e-53 -1.1697 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000219392.1 ZNF602P -808573 1.21e-13 -0.702409 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000216901.1 ZNF603P -869133 3.74e-18 0.803973 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000226314.7 ZKSCAN8P1 -854726 6.32e-06 0.322293 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000197062.11 ZSCAN26 -959955 1.19e-05 -0.207172 2e-09 breast cancer 6_27457865 rs34196306 ENSG00000216901.1 ZNF603P -718323 1.83e-20 0.875621 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000224843.6 LINC00240 500873 0.000359439 0.28533 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000219392.1 ZNF602P -657763 7.11e-16 -0.779868 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000226314.7 ZKSCAN8P1 -703916 5.85e-06 0.331364 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000197062.11 ZSCAN26 -809145 4.72e-06 -0.221655 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000187987.9 ZSCAN23 -985637 1.66e-07 0.504166 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000235109.7 ZSCAN31 -898406 0.000296688 0.23118 1e-09 breast cancer 6_27873148 rs45509595 ENSG00000197279.3 ZNF165 -207983 0.000259512 -0.350162 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000219392.1 ZNF602P -242480 4.32e-16 -0.77018 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000216901.1 ZNF603P -303040 3.16e-21 0.874583 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000197062.11 ZSCAN26 -393862 1.1e-06 -0.231123 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000226314.7 ZKSCAN8P1 -288633 4.14e-06 0.330024 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000187987.9 ZSCAN23 -570354 1.73e-08 0.531626 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000235109.7 ZSCAN31 -483123 0.000187493 0.233948 5e-09 breast cancer 6_28106103 rs34662244 ENSG00000226314.7 ZKSCAN8P1 -55678 2.44e-06 0.334709 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000219392.1 ZNF602P -9525 1.27e-17 -0.800388 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000189298.13 ZKSCAN3 -243811 0.000683554 -0.210751 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197279.3 ZNF165 24972 0.000370689 -0.338374 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000235109.7 ZSCAN31 -250168 0.000153198 0.234992 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000204713.10 TRIM27 -817886 4.09e-07 -0.194707 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000187987.9 ZSCAN23 -337399 1.02e-08 0.535149 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197062.11 ZSCAN26 -160907 8.23e-07 -0.231734 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000216901.1 ZNF603P -70085 7.87e-22 0.879197 3e-09 breast cancer 6_28364364 rs13214023 ENSG00000204713.10 TRIM27 -559625 1.16e-07 -0.204511 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000197062.11 ZSCAN26 97354 7.16e-08 -0.253964 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000226314.7 ZKSCAN8P1 202583 2.36e-06 0.336776 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000216901.1 ZNF603P 188176 1.14e-21 0.880118 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000189298.13 ZKSCAN3 14450 0.000432583 -0.219362 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000187987.9 ZSCAN23 -79138 8.72e-09 0.540093 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000235109.7 ZSCAN31 8093 0.000416809 0.220263 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000219392.1 ZNF602P 248736 2.45e-16 -0.77314 1e-09 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 1.01e-10 0.119521 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000206503.12 HLA-A -982817 9.12e-06 -0.157023 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 9.84e-14 0.33449 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000197279.3 ZNF165 877312 9.73e-05 -0.179051 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000158691.14 ZSCAN12 558709 1.47e-05 0.149655 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.96e-07 0.232347 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 1.08e-09 0.181494 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 1.01e-10 0.119521 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000206503.12 HLA-A -982817 9.12e-06 -0.157023 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 9.84e-14 0.33449 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000197279.3 ZNF165 877312 9.73e-05 -0.179051 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000158691.14 ZSCAN12 558709 1.47e-05 0.149655 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.96e-07 0.232347 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 1.08e-09 0.181494 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 1.01e-10 0.119521 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000206503.12 HLA-A -982817 9.12e-06 -0.157023 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 9.84e-14 0.33449 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000197279.3 ZNF165 877312 9.73e-05 -0.179051 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000158691.14 ZSCAN12 558709 1.47e-05 0.149655 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.96e-07 0.232347 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 1.08e-09 0.181494 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 1.01e-10 0.119521 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000206503.12 HLA-A -982817 9.12e-06 -0.157023 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 9.84e-14 0.33449 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000197279.3 ZNF165 877312 9.73e-05 -0.179051 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000158691.14 ZSCAN12 558709 1.47e-05 0.149655 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.96e-07 0.232347 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 1.08e-09 0.181494 3e-07 breast cancer 6_29280372 rs3130834 ENSG00000204713.10 TRIM27 356383 6.4e-08 -0.207244 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000281831.1 HCP5B -593411 3.55e-08 0.543813 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204622.11 HLA-J -725599 3.48e-07 -0.489052 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000187987.9 ZSCAN23 836870 1.11e-07 0.495951 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000189298.13 ZKSCAN3 930458 0.000314662 -0.223089 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204632.11 HLA-G -546595 2.39e-06 -0.484884 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000230795.3 HLA-K -646806 8.36e-08 -0.507337 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000206503.12 HLA-A -660888 6.25e-05 -0.292708 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000239257.1 RPL23AP1 -446510 0.000472252 0.328626 5e-09 breast cancer 6_29388554 rs9257809 ENSG00000204623.9 ZNRD1ASP -672699 5.84e-05 -0.148492 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000281831.1 HCP5B -485229 3.11e-09 0.563401 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000206503.12 HLA-A -552706 1.84e-05 -0.302069 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000234127.8 TRIM26 -824873 0.000232673 0.148757 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204622.11 HLA-J -617417 1.64e-09 -0.556439 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000230795.3 HLA-K -538624 3.53e-09 -0.538379 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204713.10 TRIM27 464565 9.94e-07 -0.181419 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204632.11 HLA-G -438413 3.12e-06 -0.462817 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000187987.9 ZSCAN23 945052 1.05e-06 0.441211 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000239257.1 RPL23AP1 -338328 0.000274251 0.330067 3e-08 breast cancer 6_29509637 rs1233480 ENSG00000204713.10 TRIM27 585648 0.000140399 -0.122233 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204632.11 HLA-G -317330 0.000331981 -0.308361 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000239257.1 RPL23AP1 -217245 0.000158334 0.295489 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000206503.12 HLA-A -431623 2.74e-05 -0.255228 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000281831.1 HCP5B -364146 1.29e-05 0.359918 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000230795.3 HLA-K -417541 9.3e-05 -0.309736 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204622.11 HLA-J -496334 3.77e-08 -0.438954 5e-08 breast cancer 6_29693039 rs3116813 ENSG00000204713.10 TRIM27 769050 3.16e-06 -0.169952 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000206503.12 HLA-A -248221 5e-07 -0.347414 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000230795.3 HLA-K -234139 6e-12 -0.613426 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000231130.1 HLA-T -203615 0.000305314 -0.352196 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204623.9 ZNRD1ASP -368214 6.69e-05 -0.144759 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204622.11 HLA-J -312932 7.34e-10 -0.558148 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000281831.1 HCP5B -180744 5.8e-11 0.610011 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000239257.1 RPL23AP1 -33843 3.49e-05 0.368396 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204632.11 HLA-G -133928 1.89e-08 -0.546243 6e-07 breast cancer 6_29785031 rs147680653 ENSG00000204623.9 ZNRD1ASP -276222 8.03e-05 -0.142717 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204622.11 HLA-J -220940 6.33e-10 -0.558317 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000206503.12 HLA-A -156229 8.05e-07 -0.340019 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204632.11 HLA-G -41936 5.52e-08 -0.526607 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000239257.1 RPL23AP1 58149 3.24e-05 0.368658 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000281831.1 HCP5B -88752 3.73e-11 0.613821 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000230795.3 HLA-K -142147 2.61e-12 -0.6214 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204713.10 TRIM27 861042 4.51e-06 -0.166739 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000231130.1 HLA-T -111623 0.000439515 -0.341799 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000231130.1 HLA-T -13711 0.000333316 -0.339688 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204632.11 HLA-G 55976 3.26e-08 -0.521417 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204713.10 TRIM27 958954 3.29e-06 -0.16465 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204623.9 ZNRD1ASP -178310 3.96e-05 -0.144763 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000206503.12 HLA-A -58317 5.38e-08 -0.364221 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000230795.3 HLA-K -44235 5.59e-12 -0.596197 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000234127.8 TRIM26 -330484 0.000191771 0.143748 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000281831.1 HCP5B 9160 2.39e-11 0.603519 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204622.11 HLA-J -123028 2.49e-10 -0.55611 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000239257.1 RPL23AP1 156061 8.78e-06 0.383619 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000281831.1 HCP5B 129400 2.85e-11 0.601055 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000239257.1 RPL23AP1 276301 2.08e-05 0.367463 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204622.11 HLA-J -2788 4.67e-10 -0.547617 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000234127.8 TRIM26 -210244 0.000159123 0.145483 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000206503.12 HLA-A 61923 3.16e-08 -0.370254 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000230795.3 HLA-K 76005 1.61e-11 -0.583291 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204623.9 ZNRD1ASP -58070 1.65e-05 -0.151606 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204632.11 HLA-G 176216 1.36e-08 -0.535149 7e-07 breast cancer 6_30107326 rs2523992 ENSG00000204622.11 HLA-J 101355 7.65e-05 -0.281196 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000281831.1 HCP5B 233543 7.41e-06 0.327535 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204623.9 ZNRD1ASP 46073 3.63e-07 -0.143092 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204632.11 HLA-G 280359 0.000154954 -0.287787 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000206503.12 HLA-A 166066 6.39e-07 -0.267683 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000230795.3 HLA-K 180148 1.9e-08 -0.392174 2e-07 breast cancer 6_30365728 rs3094054 ENSG00000204525.16 HLA-C -906377 4.97e-17 0.643716 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204623.9 ZNRD1ASP 304475 0.000198632 -0.130379 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000281831.1 HCP5B 491945 6.54e-09 0.52307 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000230795.3 HLA-K 438550 5.54e-10 -0.535179 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204632.11 HLA-G 538761 1.83e-09 -0.562366 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000206503.12 HLA-A 424468 3.07e-06 -0.311448 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204622.11 HLA-J 359757 5.49e-08 -0.476522 1e-07 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 9.28e-07 0.380493 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204632.11 HLA-G 548009 4.34e-05 -0.330267 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 4.4e-05 -0.30467 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 0.000118106 -0.290995 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 6.95e-10 0.410778 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 9.28e-07 0.380493 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204632.11 HLA-G 548009 4.34e-05 -0.330267 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 4.4e-05 -0.30467 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 0.000118106 -0.290995 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 6.95e-10 0.410778 5e-07 breast cancer 6_30473526 rs3132615 ENSG00000281831.1 HCP5B 599743 7.79e-07 0.426885 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000230795.3 HLA-K 546348 3.05e-09 -0.489145 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204622.11 HLA-J 467555 4.5e-07 -0.423266 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204632.11 HLA-G 646559 1.81e-06 -0.428618 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000206503.12 HLA-A 532266 0.000123035 -0.245447 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204525.16 HLA-C -798579 1.36e-14 0.566781 2e-06 breast cancer 6_30576624 rs3132610 ENSG00000204632.11 HLA-G 749657 1.48e-08 -0.52339 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204516.9 MICB -918257 2.81e-06 0.373227 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137411.16 VARS2 -337581 0.000368711 -0.2307 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204525.16 HLA-C -695481 6.48e-18 0.651868 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000281831.1 HCP5B 702841 2.15e-07 0.462414 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000206503.12 HLA-A 635364 1.31e-05 -0.28726 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204623.9 ZNRD1ASP 515371 0.000172979 -0.129801 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204622.11 HLA-J 570653 1.7e-07 -0.452696 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000230795.3 HLA-K 649446 1.17e-10 -0.54769 1e-06 breast cancer 6_30682249 rs9262142 ENSG00000204444.10 APOM -973222 1.4e-06 -0.231594 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204622.11 HLA-J 676278 8.07e-08 -0.464756 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204525.16 HLA-C -589856 3.29e-18 0.658114 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137411.16 VARS2 -231956 0.000254422 -0.23714 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204632.11 HLA-G 855282 4.03e-09 -0.543725 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204516.9 MICB -812632 3.66e-06 0.36937 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000281831.1 HCP5B 808466 9.24e-08 0.476463 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000230795.3 HLA-K 755071 7.66e-11 -0.553617 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000206503.12 HLA-A 740989 1.52e-05 -0.285518 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204623.9 ZNRD1ASP 620996 0.000184285 -0.129405 3e-06 breast cancer 6_30793795 rs3129984 ENSG00000230795.3 HLA-K 866617 2.16e-11 -0.553837 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204516.9 MICB -701086 1.75e-05 0.333875 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000281831.1 HCP5B 920012 3.47e-07 0.442867 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000206503.12 HLA-A 852535 1.74e-05 -0.275919 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204525.16 HLA-C -478310 1.48e-19 0.664341 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204632.11 HLA-G 966828 3.12e-09 -0.532871 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000243753.5 HLA-L 534211 0.000160938 -0.303257 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204622.11 HLA-J 787824 6.13e-08 -0.456397 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204444.10 APOM -861676 9.47e-07 -0.228947 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204540.10 PSORS1C1 -320955 0.000400889 -0.305364 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000213722.8 DDAH2 -936785 0.000125562 -0.117188 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204623.9 ZNRD1ASP 732542 0.000159844 -0.127129 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137411.16 VARS2 -120410 0.000354425 -0.225431 8e-06 breast cancer 6_31347004 rs115392158 ENSG00000204482.10 LST1 -239120 1.24e-05 0.205253 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 2.58e-05 -0.242738 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 1.98e-05 -0.255161 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000228789.6 HCG22 293554 0.000215722 -0.227253 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 2e-08 -0.269542 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204482.10 LST1 -239120 1.24e-05 0.205253 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 2.58e-05 -0.242738 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 1.98e-05 -0.255161 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000228789.6 HCG22 293554 0.000215722 -0.227253 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 2e-08 -0.269542 9e-06 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 8.06e-09 0.256841 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 3.81e-17 -0.50054 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000223534.1 HLA-DQB1-AS1 39341 9.88e-06 -0.279882 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 1.51e-11 -0.343218 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000240065.7 PSMB9 -154465 6.21e-05 0.1516 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 5.4e-21 0.615769 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000196735.11 HLA-DQA1 71517 1.65e-05 -0.219701 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000198502.5 HLA-DRB5 169409 5.16e-08 -0.343261 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 0.000259922 0.24426 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 2.52e-10 -0.385255 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 8.06e-09 0.256841 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 3.81e-17 -0.50054 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000223534.1 HLA-DQB1-AS1 39341 9.88e-06 -0.279882 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 1.51e-11 -0.343218 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000240065.7 PSMB9 -154465 6.21e-05 0.1516 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 5.4e-21 0.615769 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000196735.11 HLA-DQA1 71517 1.65e-05 -0.219701 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000198502.5 HLA-DRB5 169409 5.16e-08 -0.343261 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 0.000259922 0.24426 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 2.52e-10 -0.385255 6e-08 breast cancer 6_33272092 rs17215231 ENSG00000235863.3 B3GALT4 -5040 4.49e-13 0.421625 9e-13 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 6.25e-101 -0.797424 9e-13 breast cancer 6_43259403 rs111342015 ENSG00000112667.12 DNPH1 29919 5.47e-33 -0.456399 9e-08 breast cancer 6_7231610 rs9379084 ENSG00000124783.12 SSR1 -115836 0.000106081 0.15937 3e-06 breast cancer 7_100437651 rs117911427 ENSG00000166925.8 TSC22D4 -41628 9.2e-08 0.498387 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000121716.20 PILRB 85475 7.24e-14 0.841373 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000085514.15 PILRA 64206 9.19e-15 1.10763 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000242294.6 STAG3L5P 101239 7.11e-17 1.02788 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000106290.14 TAF6 318084 2.77e-07 -0.334003 7e-06 breast cancer 7_102478605 rs369574511 ENSG00000233297.4 RASA4DP -211864 6.97e-08 0.270052 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 7.15e-05 -0.0875657 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000168255.19 POLR2J3 -94051 4.08e-05 -0.218792 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000105808.17 RASA4 -138152 4.41e-05 0.171635 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000170667.14 RASA4B -39176 3.51e-08 -0.215479 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000005075.15 POLR2J -302 5.89e-07 0.0966007 2e-07 breast cancer 7_103251337 rs6946892 ENSG00000228049.7 POLR2J2 579708 0.000188249 0.211765 1e-07 breast cancer 7_21901342 rs7971 ENSG00000164649.19 CDCA7L -44742 6.52e-06 -0.138325 2e-08 breast cancer 7_21901342 rs7971 ENSG00000164649.19 CDCA7L -44742 6.52e-06 -0.138325 2e-07 breast cancer 7_55125270 rs12718945 ENSG00000146648.17 EGFR 106249 2.09e-05 -0.107805 4e-06 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 5.84e-29 0.75086 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000278416.1 PMS2P2 -663177 1.87e-05 -0.371394 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277072.4 STAG3L2 -194237 1.62e-07 0.304965 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000123965.13 PMS2P5 -197743 8.52e-20 0.759235 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000263001.5 GTF2I 38706 7.4e-14 0.287366 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277053.4 GTF2IP1 -541323 6.73e-38 -0.898777 5e-06 breast cancer 7_86844997 rs1989796 ENSG00000164659.14 ELAPOR2 -214702 2e-06 0.191359 2e-06 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.71e-36 -0.522306 1e-06 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.71e-36 -0.522306 3e-12 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.71e-36 -0.522306 5e-07 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.71e-36 -0.522306 9e-11 breast cancer 8_103189173 rs12548629 ENSG00000164933.11 SLC25A32 -218611 2.23e-05 0.0936833 3e-07 breast cancer 8_120102785 rs1519814 ENSG00000187955.11 COL14A1 43005 4.05e-07 -0.163074 8e-07 breast cancer 8_17926905 rs11779988 ENSG00000078674.17 PCM1 4065 1.69e-33 -0.285378 2e-06 breast cancer 8_17926905 rs11779988 ENSG00000104763.18 ASAH1 -158093 2.88e-08 -0.163887 2e-06 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.17e-11 0.320886 6e-09 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.17e-11 0.320886 3e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.17e-11 0.320886 3e-07 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.17e-11 0.320886 1e-08 breast cancer 8_22634616 rs6558174 ENSG00000158941.16 CCAR2 29984 5.39e-10 0.10273 3e-06 breast cancer 8_61692700 rs2350923 ENSG00000198363.17 ASPH -21940 8.36e-05 -0.1001 8e-07 breast cancer 9_103912867 rs718857 ENSG00000136824.18 SMC2 -181393 3.39e-05 -0.113682 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 6.91e-10 -0.168158 3e-08 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 6.91e-10 -0.168158 2e-07 breast cancer 9_133463535 rs3124765 ENSG00000148290.9 SURF1 106859 9.5e-12 0.287855 2e-06 breast cancer 9_133463535 rs3124765 ENSG00000175164.13 ABO 188321 7.51e-06 -0.250486 2e-06 breast cancer 9_22067594 rs10811650 ENSG00000147883.10 CDKN2B 58231 3.55e-05 -0.142168 2e-13