DISEASE	CHR_POS	SNPS	ENSEMBLE_ID	GENE_NAME	TSS_DISTANCE	GTEx_PVALUE	GTEx_SLOPE	GWAS_PVALUE
breast cancer	1_100414772	rs612683	ENSG00000079335.18	CDC14A	63038	8.18e-06	-0.267581	3e-07
breast cancer	1_119894128	rs35273427	ENSG00000134250.19	NOTCH2	-175498	1.23e-07	-0.373191	2e-07
breast cancer	1_119942712	rs6697258	ENSG00000270231.3	NBPF8	-493641	0.000151333	-0.62902	2e-15
breast cancer	1_121121848	rs369304377	ENSG00000171943.11	SRGAP2C	-62962	3.74e-09	-0.318068	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000270231.3	NBPF8	685495	2.23e-20	-0.684111	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000226067.6	LINC00623	169409	2.51e-09	0.398039	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000213244.3	H3P4	3238	5.92e-06	0.379086	2e-29
breast cancer	1_121121848	rs369304377	ENSG00000223345.3	H2BP1	4591	1.59e-08	0.477397	2e-29
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	2e-52
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	5e-08
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	9e-13
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	7e-10
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	3e-27
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	8e-09
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	2e-26
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	8e-54
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	8e-54
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	8e-54
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	8e-54
breast cancer	1_121538815	rs11249433	ENSG00000171943.11	SRGAP2C	354005	2.41e-09	-0.321433	4e-20
breast cancer	1_121538815	rs11249433	ENSG00000226067.6	LINC00623	586376	1.24e-07	0.355461	4e-20
breast cancer	1_121538815	rs11249433	ENSG00000213244.3	H3P4	420205	2.72e-06	0.391741	4e-20
breast cancer	1_121538815	rs11249433	ENSG00000223345.3	H2BP1	421558	1.33e-08	0.479458	4e-20
breast cancer	1_145790097	rs12405132	ENSG00000186364.11	NUDT17	-55532	1e-17	0.575509	5e-09
breast cancer	1_145790097	rs12405132	ENSG00000186364.11	NUDT17	-55532	1e-17	0.575509	8e-09
breast cancer	1_145790097	rs12405132	ENSG00000186364.11	NUDT17	-55532	1e-17	0.575509	6e-10
breast cancer	1_145790097	rs12405132	ENSG00000186364.11	NUDT17	-55532	1e-17	0.575509	2e-07
breast cancer	1_155176305	rs4971059	ENSG00000169231.13	THBS3	-31676	7.87e-07	0.217911	2e-10
breast cancer	1_155176305	rs4971059	ENSG00000160766.14	GBAP1	-51117	2.53e-08	-0.327602	2e-10
breast cancer	1_155176305	rs4971059	ENSG00000185499.16	MUC1	-16611	1.42e-07	0.246292	2e-10
breast cancer	1_155176305	rs4971059	ENSG00000169231.13	THBS3	-31676	7.87e-07	0.217911	5e-11
breast cancer	1_155176305	rs4971059	ENSG00000160766.14	GBAP1	-51117	2.53e-08	-0.327602	5e-11
breast cancer	1_155176305	rs4971059	ENSG00000185499.16	MUC1	-16611	1.42e-07	0.246292	5e-11
breast cancer	1_155212052	rs2974935	ENSG00000169231.13	THBS3	4071	9.17e-16	0.299171	2e-07
breast cancer	1_155212052	rs2974935	ENSG00000185499.16	MUC1	19136	5.53e-07	0.206078	2e-07
breast cancer	1_155212052	rs2974935	ENSG00000177628.15	GBA	-32647	8.89e-13	-0.280777	2e-07
breast cancer	1_155212052	rs2974935	ENSG00000231064.7	THBS3-AS1	17048	6.08e-05	0.206124	2e-07
breast cancer	1_155212052	rs2974935	ENSG00000160766.14	GBAP1	-15370	1.26e-27	-0.516868	2e-07
breast cancer	1_155212373	rs2075570	ENSG00000177628.15	GBA	-32326	8.89e-13	-0.280777	5e-06
breast cancer	1_155212373	rs2075570	ENSG00000231064.7	THBS3-AS1	17369	6.08e-05	0.206124	5e-06
breast cancer	1_155212373	rs2075570	ENSG00000169231.13	THBS3	4392	9.17e-16	0.299171	5e-06
breast cancer	1_155212373	rs2075570	ENSG00000185499.16	MUC1	19457	5.53e-07	0.206078	5e-06
breast cancer	1_155212373	rs2075570	ENSG00000160766.14	GBAP1	-15049	1.26e-27	-0.516868	5e-06
breast cancer	1_155216951	rs1057941	ENSG00000185499.16	MUC1	24035	3.25e-10	0.271298	2e-07
breast cancer	1_155216951	rs1057941	ENSG00000169231.13	THBS3	8970	9.73e-08	0.218614	2e-07
breast cancer	1_155216951	rs1057941	ENSG00000160766.14	GBAP1	-10471	8.94e-16	-0.426969	2e-07
breast cancer	1_155216951	rs1057941	ENSG00000177628.15	GBA	-27748	1.7e-05	-0.185522	2e-07
breast cancer	1_155302483	rs7524950	ENSG00000177628.15	GBA	57784	1.96e-05	-0.201774	3e-09
breast cancer	1_155302483	rs7524950	ENSG00000143622.10	RIT1	-608921	1.94e-05	-0.274763	3e-09
breast cancer	1_155302483	rs7524950	ENSG00000160766.14	GBAP1	75061	7.87e-07	-0.298667	3e-09
breast cancer	1_155302483	rs7524950	ENSG00000203761.5	MSTO2P	-443346	4.13e-06	-0.221059	3e-09
breast cancer	1_155446537	rs10796944	ENSG00000143622.10	RIT1	-464867	3.42e-05	-0.290506	7e-10
breast cancer	1_155446537	rs10796944	ENSG00000160766.14	GBAP1	219115	5.6e-05	-0.267461	7e-10
breast cancer	1_155446537	rs10796944	ENSG00000203761.5	MSTO2P	-299292	8.32e-11	-0.332573	7e-10
breast cancer	1_155587180	rs12091730	ENSG00000160766.14	GBAP1	359758	5.69e-06	-0.30097	2e-10
breast cancer	1_155587180	rs12091730	ENSG00000203761.5	MSTO2P	-158649	1.29e-10	-0.330637	2e-10
breast cancer	1_155587180	rs12091730	ENSG00000143622.10	RIT1	-324224	3.15e-05	-0.292819	2e-10
breast cancer	1_155697170	rs348196	ENSG00000143622.10	RIT1	-214234	3.2e-06	-0.306404	2e-08
breast cancer	1_155697170	rs348196	ENSG00000203761.5	MSTO2P	-48659	1.28e-17	-0.400346	2e-08
breast cancer	1_16013277	rs1763604	ENSG00000184908.17	CLCNKB	-30459	5.78e-07	0.342888	7e-09
breast cancer	1_172361919	rs1894633	ENSG00000094975.13	SUCO	-170430	6.87e-05	-0.191488	2e-06
breast cancer	1_18480845	rs2992756	ENSG00000179023.8	KLHDC7A	-137	1.77e-20	0.521777	2e-15
breast cancer	1_18480845	rs2992756	ENSG00000179023.8	KLHDC7A	-137	1.77e-20	0.521777	5e-17
breast cancer	1_204546897	rs2290854	ENSG00000170382.11	LRRN2	-138836	1.2e-05	0.255565	1e-07
breast cancer	1_207903511	rs2724379	ENSG00000284237.1	LINC02767	-55781	4.02e-15	-0.578673	2e-07
breast cancer	1_46135245	rs1707302	ENSG00000280670.2	CCDC163	635193	9.23e-05	-0.269443	3e-08
breast cancer	1_46135245	rs1707302	ENSG00000280670.2	CCDC163	635193	9.23e-05	-0.269443	3e-10
breast cancer	1_91555907	rs12134245	ENSG00000097046.12	CDC7	55014	3.76e-13	-0.308418	4e-06
breast cancer	10_121865675	rs10510102	ENSG00000107672.14	NSMCE4A	-109542	6.6e-23	0.614091	2e-06
breast cancer	10_121904429	rs7899628	ENSG00000226864.2	ATE1-AS1	-23883	4.73e-12	-0.466626	9e-10
breast cancer	10_121904429	rs7899628	ENSG00000107672.14	NSMCE4A	-70788	4.01e-07	-0.267559	9e-10
breast cancer	10_27080233	rs7918232	ENSG00000120539.14	MASTL	-75034	6.13e-11	0.639036	8e-06
breast cancer	10_27080233	rs7918232	ENSG00000107897.18	ACBD5	-161897	6.67e-05	-0.216529	8e-06
breast cancer	10_5752689	rs55910451	ENSG00000057608.16	GDI2	-89443	1.33e-23	-0.34919	4e-07
breast cancer	11_111636465	rs505372	ENSG00000204381.11	LAYN	96185	3e-08	-0.342155	3e-06
breast cancer	11_120362917	rs7924772	ENSG00000181264.8	TLCD5	37788	4.01e-06	0.236058	4e-08
breast cancer	11_18642694	rs10832963	ENSG00000179119.14	SPTY2D1	7903	9.14e-25	-0.467524	9e-06
breast cancer	11_65815595	rs3903072	ENSG00000197136.4	PCNX3	199822	0.000127735	0.107993	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000172818.9	OVOL1	28573	7.69e-11	0.380914	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000172803.17	SNX32	-18046	2.63e-05	-0.306573	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	2.78e-08	0.358228	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000172638.12	EFEMP2	-57997	1.65e-09	-0.266357	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000254470.2	AP5B1	34793	2.77e-08	0.250597	3e-07
breast cancer	11_65815595	rs3903072	ENSG00000197136.4	PCNX3	199822	0.000127735	0.107993	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000172818.9	OVOL1	28573	7.69e-11	0.380914	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000172803.17	SNX32	-18046	2.63e-05	-0.306573	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	2.78e-08	0.358228	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000172638.12	EFEMP2	-57997	1.65e-09	-0.266357	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000254470.2	AP5B1	34793	2.77e-08	0.250597	6e-12
breast cancer	11_65815595	rs3903072	ENSG00000197136.4	PCNX3	199822	0.000127735	0.107993	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000172818.9	OVOL1	28573	7.69e-11	0.380914	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000172803.17	SNX32	-18046	2.63e-05	-0.306573	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	2.78e-08	0.358228	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000172638.12	EFEMP2	-57997	1.65e-09	-0.266357	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000254470.2	AP5B1	34793	2.77e-08	0.250597	1e-10
breast cancer	11_65815595	rs3903072	ENSG00000197136.4	PCNX3	199822	0.000127735	0.107993	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000172818.9	OVOL1	28573	7.69e-11	0.380914	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000172803.17	SNX32	-18046	2.63e-05	-0.306573	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	2.78e-08	0.358228	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000172638.12	EFEMP2	-57997	1.65e-09	-0.266357	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000254470.2	AP5B1	34793	2.77e-08	0.250597	9e-12
breast cancer	11_65815595	rs3903072	ENSG00000197136.4	PCNX3	199822	0.000127735	0.107993	2e-12
breast cancer	11_65815595	rs3903072	ENSG00000172818.9	OVOL1	28573	7.69e-11	0.380914	2e-12
breast cancer	11_65815595	rs3903072	ENSG00000172803.17	SNX32	-18046	2.63e-05	-0.306573	2e-12
breast cancer	11_65815595	rs3903072	ENSG00000172543.7	CTSW	-64214	2.78e-08	0.358228	2e-12
breast cancer	11_65815595	rs3903072	ENSG00000172638.12	EFEMP2	-57997	1.65e-09	-0.266357	2e-12
breast cancer	11_65815595	rs3903072	ENSG00000254470.2	AP5B1	34793	2.77e-08	0.250597	2e-12
breast cancer	11_65935052	rs617791	ENSG00000172818.9	OVOL1	148030	6.3e-05	0.249058	7e-06
breast cancer	11_65935052	rs617791	ENSG00000172638.12	EFEMP2	61460	1.08e-05	-0.204809	7e-06
breast cancer	11_66843174	rs7570	ENSG00000173599.13	PC	-115202	2.73e-05	-0.275738	8e-06
breast cancer	11_66843174	rs7570	ENSG00000173621.8	LRFN4	-13473	2.55e-05	-0.238007	8e-06
breast cancer	11_803017	rs6597981	ENSG00000177666.16	PNPLA2	-15885	5e-06	0.187791	1e-12
breast cancer	11_803017	rs6597981	ENSG00000177685.16	CRACR2B	-23127	4.63e-20	0.41273	1e-12
breast cancer	11_803017	rs6597981	ENSG00000177595.17	PIDD1	-6629	7.16e-11	0.211599	1e-12
breast cancer	11_803017	rs6597981	ENSG00000255284.1	GATD1-DT	25439	4.48e-30	0.625297	1e-12
breast cancer	11_803017	rs6597981	ENSG00000177666.16	PNPLA2	-15885	5e-06	0.187791	3e-12
breast cancer	11_803017	rs6597981	ENSG00000177685.16	CRACR2B	-23127	4.63e-20	0.41273	3e-12
breast cancer	11_803017	rs6597981	ENSG00000177595.17	PIDD1	-6629	7.16e-11	0.211599	3e-12
breast cancer	11_803017	rs6597981	ENSG00000255284.1	GATD1-DT	25439	4.48e-30	0.625297	3e-12
breast cancer	12_111621753	rs11065979	ENSG00000111252.10	SH2B3	215805	4.69e-05	-0.19623	5e-06
breast cancer	12_24884534	rs10842422	ENSG00000060982.14	BCAT1	-64925	4.96e-08	-0.225827	3e-06
breast cancer	15_100366889	rs181337095	ENSG00000189419.6	SPATA41	17234	8.99e-08	-0.469752	3e-07
breast cancer	15_100366889	rs181337095	ENSG00000189419.6	SPATA41	17234	8.99e-08	-0.469752	3e-07
breast cancer	15_100366889	rs181337095	ENSG00000189419.6	SPATA41	17234	8.99e-08	-0.469752	2e-08
breast cancer	15_50402109	rs4774565	ENSG00000244879.6	GABPB1-AS1	46700	4.87e-16	-0.620375	2e-06
breast cancer	15_74300521	rs12904134	ENSG00000140474.12	ULK3	-542676	2.59e-05	-0.169823	8e-06
breast cancer	15_74843920	rs6938	ENSG00000178718.6	RPP25	-113298	2.13e-07	-0.268898	9e-08
breast cancer	15_74843920	rs6938	ENSG00000140474.12	ULK3	723	9.96e-18	-0.337714	9e-08
breast cancer	15_74854991	rs1869959	ENSG00000178718.6	RPP25	-102227	4.14e-06	-0.226249	5e-08
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	1.3e-20	-0.341306	5e-08
breast cancer	15_74854991	rs1869959	ENSG00000178718.6	RPP25	-102227	4.14e-06	-0.226249	6e-08
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	1.3e-20	-0.341306	6e-08
breast cancer	15_74854991	rs1869959	ENSG00000178718.6	RPP25	-102227	4.14e-06	-0.226249	4e-07
breast cancer	15_74854991	rs1869959	ENSG00000140474.12	ULK3	11794	1.3e-20	-0.341306	4e-07
breast cancer	15_75516399	rs8027365	ENSG00000169371.13	SNUPN	-110070	2.39e-06	0.320481	1e-07
breast cancer	15_75516399	rs8027365	ENSG00000140400.16	MAN2C1	148245	7.92e-45	0.700723	1e-07
breast cancer	15_90965985	rs77554484	ENSG00000258725.1	PRC1-AS1	-6875	2.63e-07	-0.538118	1e-15
breast cancer	15_90965985	rs77554484	ENSG00000140553.17	UNC45A	32008	8.15e-06	-0.331596	1e-15
breast cancer	15_90965985	rs77554484	ENSG00000166965.12	RCCD1	10189	1.81e-28	0.605863	1e-15
breast cancer	15_90968837	rs2290203	ENSG00000140553.17	UNC45A	34860	4.77e-05	-0.240861	2e-19
breast cancer	15_90968837	rs2290203	ENSG00000166965.12	RCCD1	13041	9.6e-10	0.288261	2e-19
breast cancer	15_90968837	rs2290203	ENSG00000258725.1	PRC1-AS1	-4023	1.84e-07	-0.432575	2e-19
breast cancer	15_90968837	rs2290203	ENSG00000140553.17	UNC45A	34860	4.77e-05	-0.240861	4e-08
breast cancer	15_90968837	rs2290203	ENSG00000166965.12	RCCD1	13041	9.6e-10	0.288261	4e-08
breast cancer	15_90968837	rs2290203	ENSG00000258725.1	PRC1-AS1	-4023	1.84e-07	-0.432575	4e-08
breast cancer	15_90968837	rs2290203	ENSG00000140553.17	UNC45A	34860	4.77e-05	-0.240861	8e-10
breast cancer	15_90968837	rs2290203	ENSG00000166965.12	RCCD1	13041	9.6e-10	0.288261	8e-10
breast cancer	15_90968837	rs2290203	ENSG00000258725.1	PRC1-AS1	-4023	1.84e-07	-0.432575	8e-10
breast cancer	16_53769311	rs62048402	ENSG00000177508.11	IRX3	-517452	8.31e-06	0.365211	4e-23
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	5e-08
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	3e-21
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	6e-14
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	3e-07
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	2e-14
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	2e-10
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	6e-07
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	5e-24
breast cancer	16_53779455	rs17817449	ENSG00000177508.11	IRX3	-507308	4.38e-05	0.320907	7e-13
breast cancer	16_53790314	rs62033406	ENSG00000177508.11	IRX3	-496449	1.05e-06	0.403873	3e-14
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	2e-06
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	1e-06
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	9e-09
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	3e-11
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	1e-10
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	3e-08
breast cancer	16_53821379	rs11075995	ENSG00000177508.11	IRX3	-465384	1.96e-09	-0.533062	4e-08
breast cancer	16_56387075	rs2432539	ENSG00000125124.11	BBS2	-133208	1.34e-18	-0.506896	3e-10
breast cancer	16_56387075	rs2432539	ENSG00000125124.11	BBS2	-133208	1.34e-18	-0.506896	4e-08
breast cancer	16_56497273	rs2303282	ENSG00000125124.11	BBS2	-23010	1.63e-19	-0.516647	3e-07
breast cancer	16_71475893	rs8050871	ENSG00000167377.17	ZNF23	12798	5.11e-14	-0.39693	3e-06
breast cancer	16_81924693	rs7192724	ENSG00000197943.9	PLCG2	145435	1.32e-05	-0.317709	3e-06
breast cancer	17_2195889	rs16952006	ENSG00000167720.12	SRR	-107494	6.63e-08	-0.690952	3e-06
breast cancer	17_30884649	rs7223535	ENSG00000172171.10	TEFM	-22171	5.97e-06	0.246717	4e-10
breast cancer	17_30887862	rs113934718	ENSG00000172171.10	TEFM	-18958	3.89e-06	0.251417	1e-08
breast cancer	17_30894259	rs62070652	ENSG00000172171.10	TEFM	-12561	3.89e-06	0.251417	1e-06
breast cancer	17_30894259	rs62070652	ENSG00000172171.10	TEFM	-12561	3.89e-06	0.251417	6e-09
breast cancer	17_45394123	rs4763	ENSG00000264070.1	DND1P1	-191748	1e-20	0.990326	2e-08
breast cancer	17_45394123	rs4763	ENSG00000214401.4	KANSL1-AS1	-799453	5.39e-28	0.953174	2e-08
breast cancer	17_45394123	rs4763	ENSG00000214425.7	LRRC37A4P	-156212	4.41e-34	-1.07672	2e-08
breast cancer	17_45394123	rs4763	ENSG00000204650.14	LINC02210	-226205	5.06e-43	1.05697	2e-08
breast cancer	17_45394123	rs4763	ENSG00000263503.1	MAPK8IP1P2	-208217	3.71e-23	0.933965	2e-08
breast cancer	17_45941122	rs62061734	ENSG00000264070.1	DND1P1	355251	8.59e-33	1.11078	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000185829.17	ARL17A	-638560	9.21e-14	0.710808	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000214425.7	LRRC37A4P	390787	5.78e-66	-1.23719	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000263503.1	MAPK8IP1P2	338782	6.45e-31	0.974099	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000204650.14	LINC02210	320794	4.79e-71	1.13678	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000108379.9	WNT3	-891936	1.57e-18	0.734759	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000214401.4	KANSL1-AS1	-252454	1.38e-44	1.05064	8e-12
breast cancer	17_45941122	rs62061734	ENSG00000238083.7	LRRC37A2	-570389	2.22e-34	0.990001	8e-12
breast cancer	17_46751565	rs199533	ENSG00000185829.17	ARL17A	171883	1.09e-13	0.704036	5e-08
breast cancer	17_46751565	rs199533	ENSG00000214401.4	KANSL1-AS1	557989	4.2e-48	1.07034	5e-08
breast cancer	17_46751565	rs199533	ENSG00000238083.7	LRRC37A2	240054	7.59e-32	0.954289	5e-08
breast cancer	17_46751565	rs199533	ENSG00000108379.9	WNT3	-81493	6.05e-19	0.737239	5e-08
breast cancer	17_46788237	rs199498	ENSG00000108379.9	WNT3	-44821	5.62e-21	0.749345	2e-08
breast cancer	17_46788237	rs199498	ENSG00000238083.7	LRRC37A2	276726	3.3e-26	0.85489	2e-08
breast cancer	17_46788237	rs199498	ENSG00000185829.17	ARL17A	208555	1.34e-12	0.654933	2e-08
breast cancer	17_46788237	rs199498	ENSG00000214401.4	KANSL1-AS1	594661	1.23e-33	0.913253	2e-08
breast cancer	17_54979110	rs6504950	ENSG00000141198.14	TOM1L1	79723	1.41e-05	-0.156885	8e-09
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	3.22e-05	0.180914	8e-09
breast cancer	17_54979110	rs6504950	ENSG00000141198.14	TOM1L1	79723	1.41e-05	-0.156885	1e-08
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	3.22e-05	0.180914	1e-08
breast cancer	17_54979110	rs6504950	ENSG00000141198.14	TOM1L1	79723	1.41e-05	-0.156885	5e-12
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	3.22e-05	0.180914	5e-12
breast cancer	17_54979110	rs6504950	ENSG00000141198.14	TOM1L1	79723	1.41e-05	-0.156885	2e-13
breast cancer	17_54979110	rs6504950	ENSG00000166260.10	COX11	10346	3.22e-05	0.180914	2e-13
breast cancer	17_55135212	rs2628317	ENSG00000141198.14	TOM1L1	235825	1.2e-06	-0.184027	4e-16
breast cancer	17_82597601	rs62079673	ENSG00000141580.15	WDR45B	-50952	1.24e-05	0.194473	1e-06
breast cancer	17_82946434	rs898097	ENSG00000141560.14	FN3KRP	229751	4.27e-10	-0.424521	2e-06
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	9e-13
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	9e-13
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	9e-13
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	2e-06
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	2e-06
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	2e-06
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	7e-21
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	7e-21
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	7e-21
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	2e-09
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	2e-09
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	2e-09
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	4e-13
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	4e-13
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	4e-13
breast cancer	19_17278895	rs8170	ENSG00000160117.14	ANKLE1	-2750	2.72e-06	0.387973	1e-12
breast cancer	19_17278895	rs8170	ENSG00000127220.5	ABHD8	-31341	1.42e-06	0.266006	1e-12
breast cancer	19_17278895	rs8170	ENSG00000130312.6	MRPL34	-13937	2.73e-09	-0.295358	1e-12
breast cancer	19_17279482	rs4808075	ENSG00000127220.5	ABHD8	-30754	4.41e-06	0.227946	2e-09
breast cancer	19_17279482	rs4808075	ENSG00000127220.5	ABHD8	-30754	4.41e-06	0.227946	4e-07
breast cancer	19_17282085	rs8100241	ENSG00000127220.5	ABHD8	-28151	3.47e-05	-0.180985	4e-08
breast cancer	19_17283116	rs56069439	ENSG00000127220.5	ABHD8	-27120	4.41e-06	0.227946	8e-19
breast cancer	19_17283116	rs56069439	ENSG00000127220.5	ABHD8	-27120	4.41e-06	0.227946	9e-09
breast cancer	19_17283116	rs56069439	ENSG00000127220.5	ABHD8	-27120	4.41e-06	0.227946	1e-32
breast cancer	19_17283315	rs2363956	ENSG00000127220.5	ABHD8	-26921	2.09e-05	-0.184822	2e-06
breast cancer	19_17283315	rs2363956	ENSG00000127220.5	ABHD8	-26921	2.09e-05	-0.184822	2e-08
breast cancer	19_17290595	rs67397200	ENSG00000127220.5	ABHD8	-19641	2.32e-06	0.229656	2e-08
breast cancer	19_17290595	rs67397200	ENSG00000127220.5	ABHD8	-19641	2.32e-06	0.229656	3e-17
breast cancer	19_17290595	rs67397200	ENSG00000127220.5	ABHD8	-19641	2.32e-06	0.229656	3e-37
breast cancer	19_18422832	rs7258465	ENSG00000130511.15	SSBP4	3968	3.23e-07	-0.162161	3e-28
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	5e-28
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	6e-06
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	5e-15
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	2e-31
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	6e-14
breast cancer	19_18460331	rs4808801	ENSG00000130511.15	SSBP4	41467	2.06e-07	-0.164353	4e-15
breast cancer	19_19417997	rs1469713	ENSG00000250067.11	YJEFN3	-111367	4.16e-06	-0.193285	1e-10
breast cancer	19_19434887	rs2965183	ENSG00000250067.11	YJEFN3	-94477	4.16e-06	-0.193285	1e-11
breast cancer	19_19434887	rs2965183	ENSG00000250067.11	YJEFN3	-94477	4.16e-06	-0.193285	6e-12
breast cancer	19_19535463	rs2304098	ENSG00000250067.11	YJEFN3	6099	5.1e-06	-0.192402	2e-11
breast cancer	19_43484866	rs66849333	ENSG00000073050.11	XRCC1	-95607	1.29e-05	-0.319614	1e-06
breast cancer	19_43919418	rs375066	ENSG00000176222.8	ZNF404	35367	2.46e-07	-0.25804	2e-14
breast cancer	2_171568284	rs11675683	ENSG00000071967.11	CYBRD1	46037	6.15e-06	0.149156	4e-08
breast cancer	2_201258707	rs3769821	ENSG00000064012.21	CASP8	25264	5.93e-18	0.501776	4e-18
breast cancer	2_201258707	rs3769821	ENSG00000155749.12	FLACC1	-98691	1.09e-05	-0.349061	4e-18
breast cancer	2_201279205	rs10931936	ENSG00000240344.8	PPIL3	389902	4.8e-07	-0.439503	6e-06
breast cancer	2_201279205	rs10931936	ENSG00000064012.21	CASP8	45762	3.21e-17	0.518548	6e-06
breast cancer	2_201288355	rs1035142	ENSG00000155749.12	FLACC1	-69043	6.47e-10	-0.501055	3e-09
breast cancer	2_201288355	rs1035142	ENSG00000064012.21	CASP8	54912	2.87e-29	0.647502	3e-09
breast cancer	2_201288502	rs700635	ENSG00000064012.21	CASP8	55059	8.4e-18	0.529703	5e-16
breast cancer	2_201288502	rs700635	ENSG00000240344.8	PPIL3	399199	2.79e-07	-0.450561	5e-16
breast cancer	2_201316524	rs1830298	ENSG00000240344.8	PPIL3	427221	2.79e-07	-0.450561	7e-07
breast cancer	2_201316524	rs1830298	ENSG00000064012.21	CASP8	83081	8.4e-18	0.529703	7e-07
breast cancer	2_201316524	rs1830298	ENSG00000240344.8	PPIL3	427221	2.79e-07	-0.450561	6e-24
breast cancer	2_201316524	rs1830298	ENSG00000064012.21	CASP8	83081	8.4e-18	0.529703	6e-24
breast cancer	2_201316524	rs1830298	ENSG00000240344.8	PPIL3	427221	2.79e-07	-0.450561	9e-14
breast cancer	2_201316524	rs1830298	ENSG00000064012.21	CASP8	83081	8.4e-18	0.529703	9e-14
breast cancer	2_201316524	rs1830298	ENSG00000240344.8	PPIL3	427221	2.79e-07	-0.450561	2e-16
breast cancer	2_201316524	rs1830298	ENSG00000064012.21	CASP8	83081	8.4e-18	0.529703	2e-16
breast cancer	2_201384985	rs2714486	ENSG00000064012.21	CASP8	151542	1.81e-08	-0.423861	7e-10
breast cancer	2_201502866	rs77688320	ENSG00000064012.21	CASP8	269423	3.85e-07	-0.432945	3e-09
breast cancer	2_28896719	rs67073037	ENSG00000171103.10	TRMT61B	26418	4.22e-05	0.302786	5e-09
breast cancer	2_28896719	rs67073037	ENSG00000171103.10	TRMT61B	26418	4.22e-05	0.302786	3e-06
breast cancer	2_28897867	rs4577244	ENSG00000171103.10	TRMT61B	27566	3.78e-05	0.301503	2e-09
breast cancer	21_46360308	rs9808759	ENSG00000182362.13	YBEY	73971	1.29e-10	-0.932786	4e-07
breast cancer	21_46360308	rs9808759	ENSG00000182362.13	YBEY	73971	1.29e-10	-0.932786	6e-09
breast cancer	22_29273659	rs4820803	ENSG00000100263.13	RHBDD3	5681	2.7e-07	0.255578	2e-06
breast cancer	22_30027471	rs12537	ENSG00000184117.11	NIPSNAP1	446134	5.36e-05	-0.169196	9e-07
breast cancer	22_38172826	rs738321	ENSG00000184381.18	PLA2G6	-32864	2.38e-06	0.167759	1e-13
breast cancer	22_38172826	rs738321	ENSG00000184381.18	PLA2G6	-32864	2.38e-06	0.167759	7e-14
breast cancer	22_38174306	rs4820318	ENSG00000184381.18	PLA2G6	-31384	4.65e-06	0.163114	1e-13
breast cancer	22_38962032	rs12628403	ENSG00000179750.15	APOBEC3B	-20315	4.04e-18	-0.741864	3e-17
breast cancer	22_38962032	rs12628403	ENSG00000179750.15	APOBEC3B	-20315	4.04e-18	-0.741864	9e-14
breast cancer	22_38962032	rs12628403	ENSG00000179750.15	APOBEC3B	-20315	4.04e-18	-0.741864	4e-06
breast cancer	22_42745087	rs4820477	ENSG00000128274.15	A4GALT	23789	4.41e-11	-0.261936	9e-07
breast cancer	3_156645453	rs2136690	ENSG00000197980.12	LEKR1	-180028	6.09e-09	0.417179	4e-06
breast cancer	3_156927968	rs7637701	ENSG00000197980.12	LEKR1	102487	4.98e-10	0.432415	1e-06
breast cancer	3_156927968	rs7637701	ENSG00000240875.5	LINC00886	110906	1.08e-11	-0.397467	1e-06
breast cancer	3_156927968	rs7637701	ENSG00000174912.7	METTL15P1	213040	3.95e-05	-0.301486	1e-06
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	2.88e-09	0.641386	8e-07
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	2.88e-09	0.641386	2e-08
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	2.88e-09	0.641386	6e-15
breast cancer	3_46825376	rs6796502	ENSG00000188086.13	PRSS45P	80621	2.88e-09	0.641386	7e-16
breast cancer	3_46846708	rs56387622	ENSG00000188086.13	PRSS45P	101953	8.15e-08	0.541005	5e-19
breast cancer	3_47364189	rs146331761	ENSG00000164048.13	ZNF589	-876911	5.23e-05	0.654792	5e-07
breast cancer	3_47364189	rs146331761	ENSG00000229759.1	MRPS18AP1	-892397	9.47e-05	0.846843	5e-07
breast cancer	3_49129027	rs61729152	ENSG00000182179.12	UBA7	-684919	8.08e-05	0.660736	6e-06
breast cancer	3_63956021	rs3821902	ENSG00000243410.1	PSMD6-AS1	-59864	1.93e-05	-0.269418	3e-12
breast cancer	3_63956021	rs3821902	ENSG00000163636.10	PSMD6	-67989	1.32e-11	-0.334552	3e-12
breast cancer	3_63956021	rs3821902	ENSG00000163635.17	ATXN7	91464	4.53e-11	-0.427492	3e-12
breast cancer	3_63982224	rs1053338	ENSG00000163636.10	PSMD6	-41786	3.85e-10	-0.303789	5e-11
breast cancer	3_63982224	rs1053338	ENSG00000163635.17	ATXN7	117667	6.22e-11	-0.414179	5e-11
breast cancer	3_63982224	rs1053338	ENSG00000243410.1	PSMD6-AS1	-33661	1.18e-05	-0.269168	5e-11
breast cancer	3_63982224	rs1053338	ENSG00000163636.10	PSMD6	-41786	3.85e-10	-0.303789	7e-10
breast cancer	3_63982224	rs1053338	ENSG00000163635.17	ATXN7	117667	6.22e-11	-0.414179	7e-10
breast cancer	3_63982224	rs1053338	ENSG00000243410.1	PSMD6-AS1	-33661	1.18e-05	-0.269168	7e-10
breast cancer	3_63982224	rs1053338	ENSG00000163636.10	PSMD6	-41786	3.85e-10	-0.303789	2e-07
breast cancer	3_63982224	rs1053338	ENSG00000163635.17	ATXN7	117667	6.22e-11	-0.414179	2e-07
breast cancer	3_63982224	rs1053338	ENSG00000243410.1	PSMD6-AS1	-33661	1.18e-05	-0.269168	2e-07
breast cancer	3_63982224	rs1053338	ENSG00000163636.10	PSMD6	-41786	3.85e-10	-0.303789	9e-09
breast cancer	3_63982224	rs1053338	ENSG00000163635.17	ATXN7	117667	6.22e-11	-0.414179	9e-09
breast cancer	3_63982224	rs1053338	ENSG00000243410.1	PSMD6-AS1	-33661	1.18e-05	-0.269168	9e-09
breast cancer	4_88058377	rs2725207	ENSG00000118762.7	PKD2	50709	3.37e-07	0.286912	6e-07
breast cancer	5_128098106	rs1112956	ENSG00000245937.7	SLC12A2-DT	14934	3.62e-29	0.747254	9e-06
breast cancer	5_128227188	rs36715	ENSG00000245937.7	SLC12A2-DT	144016	1.64e-15	0.480708	4e-06
breast cancer	5_132304843	rs6860806	ENSG00000072682.18	P4HA2	9528	4.13e-05	0.200453	3e-08
breast cancer	5_132304843	rs6860806	ENSG00000131435.12	PDLIM4	47172	4.08e-05	-0.198354	3e-08
breast cancer	5_132304843	rs6860806	ENSG00000072682.18	P4HA2	9528	4.13e-05	0.200453	8e-08
breast cancer	5_132304843	rs6860806	ENSG00000131435.12	PDLIM4	47172	4.08e-05	-0.198354	8e-08
breast cancer	5_132466255	rs2522057	ENSG00000164398.12	ACSL6	454012	7.78e-05	-0.272272	3e-07
breast cancer	5_132466255	rs2522057	ENSG00000072682.18	P4HA2	170940	1.87e-07	-0.269015	3e-07
breast cancer	5_132466255	rs2522057	ENSG00000164398.12	ACSL6	454012	7.78e-05	-0.272272	1e-08
breast cancer	5_132466255	rs2522057	ENSG00000072682.18	P4HA2	170940	1.87e-07	-0.269015	1e-08
breast cancer	5_132466255	rs2522057	ENSG00000164398.12	ACSL6	454012	7.78e-05	-0.272272	9e-08
breast cancer	5_132466255	rs2522057	ENSG00000072682.18	P4HA2	170940	1.87e-07	-0.269015	9e-08
breast cancer	5_132497907	rs736801	ENSG00000164398.12	ACSL6	485664	0.000206106	0.264148	8e-08
breast cancer	5_154976135	rs6890610	ENSG00000155506.16	LARP1	263233	2.41e-05	0.132152	6e-06
breast cancer	5_45285616	rs981782	ENSG00000164588.6	HCN1	-410882	3.36e-06	-0.360498	9e-06
breast cancer	5_45333758	rs55821517	ENSG00000164588.6	HCN1	-362740	0.000150112	-0.338705	5e-19
breast cancer	5_45333758	rs55821517	ENSG00000164588.6	HCN1	-362740	0.000150112	-0.338705	3e-09
breast cancer	5_45653810	rs2589161	ENSG00000164588.6	HCN1	-42688	1.86e-15	0.569616	3e-08
breast cancer	5_45846518	rs72765759	ENSG00000164588.6	HCN1	150020	7.31e-05	-0.42556	6e-13
breast cancer	5_45846518	rs72765759	ENSG00000164588.6	HCN1	150020	7.31e-05	-0.42556	9e-07
breast cancer	5_45984331	rs72751936	ENSG00000164588.6	HCN1	287833	7.13e-05	-0.42938	4e-12
breast cancer	5_46005944	rs145901335	ENSG00000164588.6	HCN1	309446	2.42e-05	-0.453957	4e-07
breast cancer	5_46090449	rs72755643	ENSG00000164588.6	HCN1	393951	7.63e-05	-0.436416	3e-11
breast cancer	5_46394269	rs142427110	ENSG00000164588.6	HCN1	697771	7.31e-05	-0.42556	1e-12
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	5e-09
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	1e-39
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	3e-36
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	1e-08
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	7e-20
breast cancer	5_56736057	rs889312	ENSG00000155542.11	SETD9	-173203	1.62e-06	0.337291	3e-27
breast cancer	5_56737113	rs1862626	ENSG00000155542.11	SETD9	-172147	1.37e-06	0.337709	4e-12
breast cancer	5_56977866	rs10036895	ENSG00000155542.11	SETD9	68606	3.05e-17	0.545722	2e-12
breast cancer	5_81972251	rs111549985	ENSG00000152348.15	ATG10	226	3.94e-27	0.866863	6e-12
breast cancer	5_81972251	rs111549985	ENSG00000186468.12	RPS23	-306326	2.59e-19	-0.417883	6e-12
breast cancer	5_81972251	rs111549985	ENSG00000205464.11	ATP6AP1L	-307211	5.1e-28	0.834374	6e-12
breast cancer	5_82161539	rs2407064	ENSG00000205464.11	ATP6AP1L	-117923	2.21e-31	-0.855335	3e-08
breast cancer	5_82161539	rs2407064	ENSG00000186468.12	RPS23	-117038	4.78e-20	0.416188	3e-08
breast cancer	5_82161539	rs2407064	ENSG00000152348.15	ATG10	189514	7.35e-25	-0.817868	3e-08
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	1.15e-23	-0.803008	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.75e-19	0.412006	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	4.66e-32	-0.865132	2e-12
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	1.15e-23	-0.803008	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.75e-19	0.412006	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	4.66e-32	-0.865132	5e-11
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	1.15e-23	-0.803008	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.75e-19	0.412006	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	4.66e-32	-0.865132	1e-12
breast cancer	5_82242227	rs7707921	ENSG00000152348.15	ATG10	270202	1.15e-23	-0.803008	4e-09
breast cancer	5_82242227	rs7707921	ENSG00000186468.12	RPS23	-36350	1.75e-19	0.412006	4e-09
breast cancer	5_82242227	rs7707921	ENSG00000205464.11	ATP6AP1L	-37235	4.66e-32	-0.865132	4e-09
breast cancer	5_82340549	rs2407156	ENSG00000152348.15	ATG10	368524	2.27e-16	0.686723	2e-06
breast cancer	5_82340549	rs2407156	ENSG00000186468.12	RPS23	61972	1.03e-16	-0.388245	2e-06
breast cancer	5_82340549	rs2407156	ENSG00000205464.11	ATP6AP1L	61087	4.9e-23	0.763214	2e-06
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	4.07e-39	-1.06481	8e-10
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	4.07e-39	-1.06481	2e-12
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	4.07e-39	-1.06481	3e-12
breast cancer	6_130027974	rs6569648	ENSG00000198945.7	L3MBTL3	14275	4.07e-39	-1.06481	4e-08
breast cancer	6_25710343	rs68006638	ENSG00000186470.13	BTN3A2	-654816	7.13e-18	-1.20155	2e-07
breast cancer	6_25874195	rs13198474	ENSG00000186470.13	BTN3A2	-490964	3.23e-18	-1.19765	2e-07
breast cancer	6_26175638	rs17598658	ENSG00000186470.13	BTN3A2	-189521	9.79e-18	-1.14156	2e-09
breast cancer	6_26463346	rs13195401	ENSG00000124508.16	BTN2A2	80250	1.13e-06	-0.717737	2e-09
breast cancer	6_26463346	rs13195401	ENSG00000186470.13	BTN3A2	98187	3.1e-26	-1.29448	2e-09
breast cancer	6_26993501	rs34546498	ENSG00000186470.13	BTN3A2	628342	1.42e-24	-1.31456	9e-10
breast cancer	6_26993501	rs34546498	ENSG00000124508.16	BTN2A2	610405	3.37e-06	-0.716916	9e-10
breast cancer	6_27307055	rs56114371	ENSG00000186470.13	BTN3A2	941896	3.31e-23	-1.21452	2e-09
breast cancer	6_27307055	rs56114371	ENSG00000124508.16	BTN2A2	923959	6.86e-06	-0.65818	2e-09
breast cancer	6_27873148	rs45509595	ENSG00000197062.11	ZSCAN26	-393862	9.47e-05	-0.406299	5e-09
breast cancer	6_27873148	rs45509595	ENSG00000235109.7	ZSCAN31	-483123	0.000244963	0.631611	5e-09
breast cancer	6_28106103	rs34662244	ENSG00000235109.7	ZSCAN31	-250168	0.000244963	0.631611	3e-09
breast cancer	6_28106103	rs34662244	ENSG00000197062.11	ZSCAN26	-160907	9.47e-05	-0.406299	3e-09
breast cancer	6_28364364	rs13214023	ENSG00000197062.11	ZSCAN26	97354	0.00019839	-0.401465	1e-09
breast cancer	6_28364364	rs13214023	ENSG00000235109.7	ZSCAN31	8093	0.00011579	0.686295	1e-09
breast cancer	6_28958443	rs9257408	ENSG00000235109.7	ZSCAN31	602172	5.79e-09	0.417443	3e-07
breast cancer	6_28958443	rs9257408	ENSG00000235109.7	ZSCAN31	602172	5.79e-09	0.417443	5e-07
breast cancer	6_28958443	rs9257408	ENSG00000235109.7	ZSCAN31	602172	5.79e-09	0.417443	5e-08
breast cancer	6_28958443	rs9257408	ENSG00000235109.7	ZSCAN31	602172	5.79e-09	0.417443	7e-08
breast cancer	6_29280372	rs3130834	ENSG00000204644.9	ZFP57	-400738	2.16e-07	0.916461	5e-09
breast cancer	6_29280372	rs3130834	ENSG00000281831.1	HCP5B	-593411	1.57e-06	0.887619	5e-09
breast cancer	6_29280372	rs3130834	ENSG00000235109.7	ZSCAN31	924101	0.000296998	0.627126	5e-09
breast cancer	6_29388554	rs9257809	ENSG00000281831.1	HCP5B	-485229	7.32e-09	1.03592	3e-08
breast cancer	6_29388554	rs9257809	ENSG00000230795.3	HLA-K	-538624	1.68e-05	-0.83542	3e-08
breast cancer	6_29388554	rs9257809	ENSG00000204644.9	ZFP57	-292556	4.54e-08	0.943538	3e-08
breast cancer	6_29509637	rs1233480	ENSG00000230795.3	HLA-K	-417541	0.000145599	-0.614735	5e-08
breast cancer	6_29509637	rs1233480	ENSG00000281831.1	HCP5B	-364146	7.89e-07	0.741063	5e-08
breast cancer	6_29509637	rs1233480	ENSG00000204644.9	ZFP57	-171473	6.04e-06	0.654382	5e-08
breast cancer	6_29693039	rs3116813	ENSG00000281831.1	HCP5B	-180744	4.55e-08	0.929557	6e-07
breast cancer	6_29693039	rs3116813	ENSG00000204618.8	RNF39	-382848	3.82e-05	0.556481	6e-07
breast cancer	6_29693039	rs3116813	ENSG00000204644.9	ZFP57	11929	2.65e-08	0.906835	6e-07
breast cancer	6_29693039	rs3116813	ENSG00000230795.3	HLA-K	-234139	1.07e-05	-0.807437	6e-07
breast cancer	6_29785031	rs147680653	ENSG00000204618.8	RNF39	-290856	6.75e-05	0.540671	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000137312.14	FLOT1	-957702	2.32e-09	0.382125	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000204644.9	ZFP57	103921	8.91e-09	0.938294	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000230795.3	HLA-K	-142147	1.2e-05	-0.805541	1e-06
breast cancer	6_29785031	rs147680653	ENSG00000281831.1	HCP5B	-88752	1.13e-08	0.97096	1e-06
breast cancer	6_29882943	rs1611579	ENSG00000281831.1	HCP5B	9160	3.92e-09	0.961121	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000137312.14	FLOT1	-859790	4.77e-08	0.337843	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000204618.8	RNF39	-192944	1.04e-05	0.573349	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000230795.3	HLA-K	-44235	8.23e-07	-0.868169	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000204622.11	HLA-J	-123028	7.67e-05	-0.474563	8e-07
breast cancer	6_29882943	rs1611579	ENSG00000204644.9	ZFP57	201833	1.4e-07	0.830801	8e-07
breast cancer	6_30003183	rs3094146	ENSG00000204644.9	ZFP57	322073	5e-07	0.801994	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000281831.1	HCP5B	129400	2.31e-08	0.923284	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000204622.11	HLA-J	-2788	0.000119781	-0.466114	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000204618.8	RNF39	-72704	4.81e-06	0.599097	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000137312.14	FLOT1	-739550	2.42e-07	0.323371	7e-07
breast cancer	6_30003183	rs3094146	ENSG00000230795.3	HLA-K	76005	2.58e-07	-0.913285	7e-07
breast cancer	6_30107326	rs2523992	ENSG00000137312.14	FLOT1	-635407	5.97e-05	0.182869	2e-07
breast cancer	6_30107326	rs2523992	ENSG00000066379.14	POLR1H	45685	5.4e-05	0.274757	2e-07
breast cancer	6_30365728	rs3094054	ENSG00000281831.1	HCP5B	491945	1.55e-06	0.831002	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000137312.14	FLOT1	-377005	5.83e-09	0.375861	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000204618.8	RNF39	289841	7.99e-06	0.60803	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000204644.9	ZFP57	684618	3.73e-06	0.769324	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000230795.3	HLA-K	438550	0.000214873	-0.689909	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000231402.1	WASF5P	-923236	2.28e-06	0.843306	1e-07
breast cancer	6_30365728	rs3094054	ENSG00000204525.16	HLA-C	-906377	6.36e-08	0.812175	1e-07
breast cancer	6_30374976	rs115707823	ENSG00000204618.8	RNF39	299089	0.000104116	0.443898	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000281831.1	HCP5B	501193	2.66e-05	0.610637	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204644.9	ZFP57	693866	0.000151069	0.53052	2e-06
breast cancer	6_30374976	rs115707823	ENSG00000204618.8	RNF39	299089	0.000104116	0.443898	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000281831.1	HCP5B	501193	2.66e-05	0.610637	5e-07
breast cancer	6_30374976	rs115707823	ENSG00000204644.9	ZFP57	693866	0.000151069	0.53052	5e-07
breast cancer	6_30473526	rs3132615	ENSG00000204618.8	RNF39	397639	3.1e-05	0.534037	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000204644.9	ZFP57	792416	0.000119674	0.604732	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000281831.1	HCP5B	599743	2.68e-06	0.763215	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000137312.14	FLOT1	-269207	9.03e-10	0.370096	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000231402.1	WASF5P	-815438	1.61e-07	0.873431	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000137411.16	VARS2	-440679	0.000102586	-0.525162	2e-06
breast cancer	6_30473526	rs3132615	ENSG00000204525.16	HLA-C	-798579	1.97e-07	0.735145	2e-06
breast cancer	6_30576624	rs3132610	ENSG00000204536.13	CCHCR1	-581614	0.000117992	0.436341	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000281831.1	HCP5B	702841	3.43e-06	0.753625	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000231402.1	WASF5P	-712340	7.54e-10	1.01327	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000137411.16	VARS2	-337581	2.58e-05	-0.566123	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000137312.14	FLOT1	-166109	6.3e-10	0.372432	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000204644.9	ZFP57	895514	0.000144672	0.596219	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000204525.16	HLA-C	-695481	9.58e-09	0.804422	1e-06
breast cancer	6_30576624	rs3132610	ENSG00000204618.8	RNF39	500737	1.85e-05	0.547233	1e-06
breast cancer	6_30682249	rs9262142	ENSG00000231402.1	WASF5P	-606715	1.34e-10	1.02659	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000137312.14	FLOT1	-60484	2.02e-10	0.372346	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000204618.8	RNF39	606362	8.38e-06	0.553662	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000204536.13	CCHCR1	-475989	5.77e-05	0.443374	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000137411.16	VARS2	-231956	4.26e-05	-0.536848	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000204525.16	HLA-C	-589856	2.14e-09	0.815125	3e-06
breast cancer	6_30682249	rs9262142	ENSG00000281831.1	HCP5B	808466	2.97e-05	0.662769	3e-06
breast cancer	6_30793795	rs3129984	ENSG00000204525.16	HLA-C	-478310	2.69e-09	0.775645	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000204618.8	RNF39	717908	3.61e-06	0.550096	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000137312.14	FLOT1	51062	2.64e-10	0.354206	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000231402.1	WASF5P	-495169	1.31e-10	0.982908	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000204536.13	CCHCR1	-364443	0.000118193	0.406705	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000137411.16	VARS2	-120410	4.41e-05	-0.512843	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000281831.1	HCP5B	920012	8.14e-05	0.599716	8e-06
breast cancer	6_30793795	rs3129984	ENSG00000204540.10	PSORS1C1	-320955	6.98e-05	-0.549963	8e-06
breast cancer	6_31347004	rs115392158	ENSG00000234745.10	HLA-B	-9438	5.98e-05	0.228745	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000231402.1	WASF5P	58040	8.02e-08	0.518276	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000244731.7	C4A	-635020	9.02e-06	-0.250991	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000204308.7	RNF5	-831350	1.8e-05	-0.253029	9e-06
breast cancer	6_31347004	rs115392158	ENSG00000234745.10	HLA-B	-9438	5.98e-05	0.228745	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000231402.1	WASF5P	58040	8.02e-08	0.518276	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000244731.7	C4A	-635020	9.02e-06	-0.250991	3e-07
breast cancer	6_31347004	rs115392158	ENSG00000204308.7	RNF5	-831350	1.8e-05	-0.253029	3e-07
breast cancer	6_32699696	rs147527678	ENSG00000179344.16	HLA-DQB1	31313	1.48e-08	-0.553722	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000204257.14	HLA-DMA	-269398	2.14e-08	0.403569	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000196735.11	HLA-DQA1	71517	9.33e-05	-0.307508	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000244731.7	C4A	717672	5.34e-08	-0.340414	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000232629.8	HLA-DQB2	-63838	2.4e-07	0.503057	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000204338.8	CYP21A1P	694007	8.5e-06	-0.397959	5e-07
breast cancer	6_32699696	rs147527678	ENSG00000179344.16	HLA-DQB1	31313	1.48e-08	-0.553722	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000204257.14	HLA-DMA	-269398	2.14e-08	0.403569	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000196735.11	HLA-DQA1	71517	9.33e-05	-0.307508	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000244731.7	C4A	717672	5.34e-08	-0.340414	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000232629.8	HLA-DQB2	-63838	2.4e-07	0.503057	6e-08
breast cancer	6_32699696	rs147527678	ENSG00000204338.8	CYP21A1P	694007	8.5e-06	-0.397959	6e-08
breast cancer	6_33272092	rs17215231	ENSG00000235863.3	B3GALT4	-5040	9.21e-07	0.462597	9e-13
breast cancer	6_33272092	rs17215231	ENSG00000231500.6	RPS18	44	1.22e-29	-0.639262	9e-13
breast cancer	6_43259403	rs111342015	ENSG00000112667.12	DNPH1	29919	1.72e-16	-0.466014	9e-08
breast cancer	7_100437651	rs117911427	ENSG00000242294.6	STAG3L5P	101239	1.79e-06	0.759946	7e-06
breast cancer	7_100437651	rs117911427	ENSG00000085514.15	PILRA	64206	3.97e-05	0.973889	7e-06
breast cancer	7_100437651	rs117911427	ENSG00000121716.20	PILRB	85475	2.08e-07	0.769773	7e-06
breast cancer	7_102478605	rs369574511	ENSG00000161036.12	LRWD1	13676	2e-05	-0.208831	2e-07
breast cancer	7_102478605	rs369574511	ENSG00000260097.2	SPDYE6	122161	4.34e-05	0.321865	2e-07
breast cancer	7_102478605	rs369574511	ENSG00000105808.17	RASA4	-138152	1.65e-06	0.353117	2e-07
breast cancer	7_144351809	rs62485509	ENSG00000204959.4	ARHGEF34P	64843	3.51e-12	-0.658691	4e-12
breast cancer	7_144351809	rs62485509	ENSG00000170356.8	OR2A20P	98852	4.3e-06	0.464655	4e-12
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	2e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	2e-11
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	1e-08
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	1e-08
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	4e-10
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	4e-10
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	1e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	1e-11
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	7e-12
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	7e-12
breast cancer	7_144377836	rs720475	ENSG00000170356.8	OR2A20P	124879	1.53e-05	0.376485	7e-11
breast cancer	7_144377836	rs720475	ENSG00000204959.4	ARHGEF34P	90870	2.91e-12	-0.567846	7e-11
breast cancer	7_144477198	rs13230714	ENSG00000204959.4	ARHGEF34P	190232	1.28e-05	-0.340179	1e-06
breast cancer	7_38712494	rs7794030	ENSG00000164556.7	FAM183BP	25457	1.81e-05	-0.38686	1e-06
breast cancer	7_38728314	rs1468348	ENSG00000164556.7	FAM183BP	41277	1.41e-05	-0.384101	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000277072.4	STAG3L2	-194237	3.69e-05	0.41772	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000277053.4	GTF2IP1	-541323	6.9e-09	-0.62569	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000263001.5	GTF2I	38706	2.42e-12	0.423897	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000123965.13	PMS2P5	-197743	2.75e-08	0.682637	5e-06
breast cancer	7_74696373	rs74910854	ENSG00000196275.13	GTF2IRD2	-155178	1.15e-09	0.603163	5e-06
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	4.52e-05	-0.296023	1e-10
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	4.52e-05	-0.296023	2e-11
breast cancer	8_123745421	rs17350191	ENSG00000104537.16	ANXA13	8014	4.52e-05	-0.296023	2e-08
breast cancer	8_17926905	rs11779988	ENSG00000104760.16	FGL1	16540	2.19e-11	0.521672	2e-06
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	2.72e-10	0.558366	6e-09
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	2.72e-10	0.558366	1e-08
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	2.72e-10	0.558366	3e-08
breast cancer	8_220692	rs66823261	ENSG00000223508.5	RPL23AP53	-11444	2.72e-10	0.558366	3e-07
breast cancer	9_133463535	rs3124765	ENSG00000148290.9	SURF1	106859	1.54e-05	0.215853	2e-06