DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_100414772 rs612683 ENSG00000079335.18 CDC14A 63038 7.45e-05 -0.168009 3e-07 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 6.85e-18 0.552762 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 4.04e-05 0.121484 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.9e-06 0.45311 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 6.85e-18 0.552762 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 4.04e-05 0.121484 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.9e-06 0.45311 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 6.85e-18 0.552762 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000213366.12 GSTM2 -30888 4.04e-05 0.121484 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000134184.12 GSTM1 -50680 6.9e-06 0.45311 3e-08 breast cancer 1_113903258 rs7513707 ENSG00000226167.1 AP4B1-AS1 46623 6.05e-06 -0.262999 2e-11 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.95e-05 -0.248408 2e-08 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.95e-05 -0.248408 1e-09 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.95e-05 -0.248408 6e-07 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.95e-05 -0.248408 5e-11 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.95e-05 -0.248408 3e-09 breast cancer 1_118488075 rs10923574 ENSG00000231365.5 WARS2-AS1 -652384 8.14e-05 0.222047 4e-07 breast cancer 1_121121848 rs369304377 ENSG00000171943.11 SRGAP2C -62962 2.86e-08 -0.278529 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000227082.1 LINC02798 -274906 4.64e-06 -0.293372 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000273136.6 NBPF26 397925 7.21e-13 0.523719 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000270231.3 NBPF8 685495 2.93e-08 0.32305 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000223345.3 H2BP1 4591 2.11e-07 0.309997 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000270392.2 PFN1P2 687796 4.83e-11 0.325362 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000226067.6 LINC00623 169409 2.51e-13 -0.448246 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 1.77e-11 0.499566 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 6.59e-05 0.243585 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 1.28e-10 -0.324216 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.3e-09 -0.369758 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000227082.1 LINC02798 142061 1.68e-07 -0.337779 9e-13 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.02e-08 0.166551 8e-09 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 4.2e-16 0.419455 8e-09 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.02e-08 0.166551 2e-07 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 4.2e-16 0.419455 2e-07 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.02e-08 0.166551 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 4.2e-16 0.419455 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.02e-08 0.166551 5e-09 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 4.2e-16 0.419455 5e-09 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.29e-16 -0.372991 2e-10 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.29e-16 -0.372991 5e-11 breast cancer 1_155212052 rs2974935 ENSG00000177628.15 GBA -32647 8.39e-05 -0.108824 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000160767.20 FAM189B -43431 1.31e-05 0.110592 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000160766.14 GBAP1 -15370 1.51e-50 -0.541177 2e-07 breast cancer 1_155212373 rs2075570 ENSG00000160766.14 GBAP1 -15049 1.02e-50 -0.540612 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000177628.15 GBA -32326 7.51e-05 -0.109298 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000160767.20 FAM189B -43110 1.76e-05 0.108729 5e-06 breast cancer 1_155216951 rs1057941 ENSG00000185499.16 MUC1 24035 0.000136138 0.137488 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000160766.14 GBAP1 -10471 8e-28 -0.437489 2e-07 breast cancer 1_155302483 rs7524950 ENSG00000160766.14 GBAP1 75061 7.1e-22 -0.447244 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000160767.20 FAM189B 47000 1.19e-09 0.177854 3e-09 breast cancer 1_155446537 rs10796944 ENSG00000160766.14 GBAP1 219115 8.05e-12 -0.356579 7e-10 breast cancer 1_155587180 rs12091730 ENSG00000160766.14 GBAP1 359758 4.57e-11 -0.343658 2e-10 breast cancer 1_155697170 rs348196 ENSG00000160766.14 GBAP1 469748 3.54e-08 -0.275528 2e-08 breast cancer 1_155697170 rs348196 ENSG00000160767.20 FAM189B 441687 1.06e-06 0.147728 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000242252.1 BGLAP -58710 9.43e-05 -0.181113 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 8.09e-07 0.197369 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000242252.1 BGLAP -58710 9.43e-05 -0.181113 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 8.09e-07 0.197369 2e-08 breast cancer 1_16013277 rs1763604 ENSG00000186510.11 CLCNKA -5598 3.11e-19 -0.451155 7e-09 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 1.81e-08 -0.204373 2e-08 breast cancer 1_202209914 rs17489300 ENSG00000133067.17 LGR6 16013 1.81e-08 -0.204373 9e-10 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 3.39e-09 -0.209836 1e-08 breast cancer 1_202218048 rs6678914 ENSG00000133067.17 LGR6 24147 3.39e-09 -0.209836 3e-12 breast cancer 1_207903511 rs2724379 ENSG00000284237.1 LINC02767 -55781 3.42e-23 -0.523575 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000117480.15 FAAH -475796 2.96e-05 -0.206849 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000132780.16 NASP 334623 0.000118799 -0.13162 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000232022.7 FAAHP1 -513660 0.000114551 0.198976 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000086015.20 MAST2 131482 2.56e-18 -0.302928 2e-07 breast cancer 1_46135245 rs1707302 ENSG00000086015.20 MAST2 348258 5.7e-22 0.321649 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 0.000172104 0.167463 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000232022.7 FAAHP1 -296884 5.23e-05 -0.203016 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 9.1e-06 0.213717 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000086015.20 MAST2 348258 5.7e-22 0.321649 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 0.000172104 0.167463 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000232022.7 FAAHP1 -296884 5.23e-05 -0.203016 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 9.1e-06 0.213717 3e-10 breast cancer 1_7857016 rs707475 ENSG00000049245.12 VAMP3 85747 0.000101303 -0.115085 1e-07 breast cancer 1_8326670 rs9628987; rs7535752 ENSG00000162426.14 SLC45A1 8844 8.3e-17 0.400621 5e-06 breast cancer 1_91555907 rs12134245 ENSG00000097046.12 CDC7 55014 1.5e-07 -0.209627 4e-06 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 2e-13 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 3e-08 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 9e-13 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 5e-08 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 2e-13 breast cancer 10_113014168 rs7904519 ENSG00000148737.16 TCF7L2 63918 1.57e-17 -0.328884 8e-10 breast cancer 10_113017911 rs10885405 ENSG00000148737.16 TCF7L2 67661 5.85e-16 -0.310603 5e-14 breast cancer 10_113023044 rs6585202 ENSG00000148737.16 TCF7L2 72794 5.81e-16 -0.311593 1e-09 breast cancer 10_121865675 rs10510102 ENSG00000226864.2 ATE1-AS1 -62637 1.08e-07 0.405839 2e-06 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 9.22e-15 -0.481807 9e-10 breast cancer 10_13865236 rs10906522 ENSG00000151474.21 FRMD4A -596906 4.84e-09 -0.247941 1e-07 breast cancer 10_27080233 rs7918232 ENSG00000120539.14 MASTL -75034 1.16e-22 0.63429 8e-06 breast cancer 10_5752689 rs55910451 ENSG00000057608.16 GDI2 -89443 1.35e-20 -0.301196 4e-07 breast cancer 10_92172529 rs72807246 ENSG00000119938.8 PPP1R3C 539475 1.79e-08 0.296715 3e-06 breast cancer 10_92172529 rs72807246 ENSG00000228701.1 TNKS2-DT 374238 2.19e-07 0.497565 3e-06 breast cancer 11_111765903 rs643506 ENSG00000255561.6 FDXACB1 -114872 6.57e-05 -0.146774 2e-07 breast cancer 11_111765903 rs643506 ENSG00000137713.15 PPP2R1B -524 1.69e-15 -0.296821 2e-07 breast cancer 11_117214494 rs77683187 ENSG00000149577.15 SIDT2 35761 4.3e-05 0.232999 2e-06 breast cancer 11_120362917 rs7924772 ENSG00000181264.8 TLCD5 37788 2.72e-14 0.189598 4e-08 breast cancer 11_18642694 rs10832963 ENSG00000179119.14 SPTY2D1 7903 4.49e-14 -0.209582 9e-06 breast cancer 11_1920716 rs909116 ENSG00000130595.17 TNNT3 1154 6.39e-05 -0.199022 7e-07 breast cancer 11_47325389 rs11039183 ENSG00000110514.19 MADD 56228 0.000167964 -0.140278 6e-06 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.92e-06 -0.12666 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 7.46e-05 0.0847885 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 1.99e-06 -0.111637 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 9.21e-14 0.365964 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 8.28e-12 -0.435443 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000173327.7 MAP3K11 201346 2.53e-05 0.145093 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.92e-06 -0.12666 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 7.46e-05 0.0847885 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 1.99e-06 -0.111637 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 9.21e-14 0.365964 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 8.28e-12 -0.435443 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000173327.7 MAP3K11 201346 2.53e-05 0.145093 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.92e-06 -0.12666 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 7.46e-05 0.0847885 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 1.99e-06 -0.111637 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 9.21e-14 0.365964 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 8.28e-12 -0.435443 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000173327.7 MAP3K11 201346 2.53e-05 0.145093 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.92e-06 -0.12666 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 7.46e-05 0.0847885 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 1.99e-06 -0.111637 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 9.21e-14 0.365964 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 8.28e-12 -0.435443 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000173327.7 MAP3K11 201346 2.53e-05 0.145093 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172638.12 EFEMP2 -57997 1.92e-06 -0.12666 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 7.46e-05 0.0847885 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172500.12 FIBP -72944 1.99e-06 -0.111637 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 9.21e-14 0.365964 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 8.28e-12 -0.435443 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000173327.7 MAP3K11 201346 2.53e-05 0.145093 9e-12 breast cancer 11_65935052 rs617791 ENSG00000175376.8 EIF1AD -67026 1.46e-06 -0.148941 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172803.17 SNX32 101411 8.64e-09 -0.385676 7e-06 breast cancer 11_65935052 rs617791 ENSG00000175334.7 BANF1 -67125 1.11e-09 0.133451 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172500.12 FIBP 46513 0.000120426 -0.0945357 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172543.7 CTSW 55243 1.03e-07 0.277728 7e-06 breast cancer 11_65935052 rs617791 ENSG00000173327.7 MAP3K11 320803 4.49e-05 0.146395 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172638.12 EFEMP2 61460 0.000130599 -0.106548 7e-06 breast cancer 11_66301747 rs1783730 ENSG00000174807.3 CD248 -15297 8.87e-05 -0.130699 3e-07 breast cancer 11_66843174 rs7570 ENSG00000173621.8 LRFN4 -13473 2.03e-07 -0.240263 8e-06 breast cancer 11_66843174 rs7570 ENSG00000248746.5 ACTN3 296779 2.43e-07 0.38882 8e-06 breast cancer 11_66843174 rs7570 ENSG00000174080.10 CTSF 274333 1.78e-26 0.390067 8e-06 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 1.28e-48 0.678796 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 6.78e-13 0.161712 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 1.99e-36 0.333505 1e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 1.28e-48 0.678796 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 6.78e-13 0.161712 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 1.99e-36 0.333505 3e-12 breast cancer 12_111446804 rs3184504 ENSG00000111275.12 ALDH2 -320083 1.81e-06 -0.127718 1e-06 breast cancer 12_111446804 rs3184504 ENSG00000111275.12 ALDH2 -320083 1.81e-06 -0.127718 2e-06 breast cancer 12_111621753 rs11065979 ENSG00000111275.12 ALDH2 -145134 8.04e-06 0.122466 5e-06 breast cancer 12_120997672 rs2464195 ENSG00000157895.11 C12orf43 -18830 3.27e-07 -0.201201 3e-08 breast cancer 12_14257551 rs17221259 ENSG00000179256.2 SMCO3 -556631 5.08e-06 -0.286901 7e-06 breast cancer 12_14257551 rs17221259 ENSG00000111339.10 ART4 -585944 9.73e-05 -0.160886 7e-06 breast cancer 12_49251457 rs11168936 ENSG00000167553.15 TUBA1C 42911 2.28e-06 -0.12876 9e-07 breast cancer 12_49251457 rs11168936 ENSG00000139537.10 CCDC65 347347 3.19e-05 0.26201 9e-07 breast cancer 14_67599772 rs7149859 ENSG00000100564.8 PIGH -515 1.93e-08 -0.227329 7e-07 breast cancer 15_49580388 rs8027730 ENSG00000166262.15 FAM227B -40543 5.31e-10 0.200004 3e-08 breast cancer 15_50402109 rs4774565 ENSG00000104064.16 GABPB1 47151 3.59e-08 -0.22538 2e-06 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 3.53e-23 -0.591219 2e-06 breast cancer 15_51321455 rs1004983 ENSG00000186417.13 GLDN -20174 1.35e-07 -0.260395 3e-06 breast cancer 15_74300521 rs12904134 ENSG00000178718.6 RPP25 -656697 4.2e-06 -0.234079 8e-06 breast cancer 15_74843920 rs6938 ENSG00000140474.12 ULK3 723 1.05e-07 -0.15212 9e-08 breast cancer 15_74843920 rs6938 ENSG00000178802.17 MPI -46085 0.000107154 0.126482 9e-08 breast cancer 15_74843920 rs6938 ENSG00000103653.16 CSK 61863 2.28e-06 -0.117119 9e-08 breast cancer 15_74843920 rs6938 ENSG00000178718.6 RPP25 -113298 5.54e-19 -0.467005 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 4.46e-07 -0.121864 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.88e-10 -0.176342 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 2.58e-06 0.149127 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000179335.18 CLK3 256491 6.83e-05 -0.0982668 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 4.37e-19 -0.457341 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 4.46e-07 -0.121864 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.88e-10 -0.176342 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 2.58e-06 0.149127 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000179335.18 CLK3 256491 6.83e-05 -0.0982668 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 4.37e-19 -0.457341 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000103653.16 CSK 72934 4.46e-07 -0.121864 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000140474.12 ULK3 11794 1.88e-10 -0.176342 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 2.58e-06 0.149127 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000179335.18 CLK3 256491 6.83e-05 -0.0982668 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178718.6 RPP25 -102227 4.37e-19 -0.457341 5e-08 breast cancer 15_75516399 rs8027365 ENSG00000140398.13 NEIL1 169237 0.000161977 0.117091 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 6.6e-77 0.778283 1e-07 breast cancer 15_77977130 rs12906542 ENSG00000167202.11 TBC1D2B -100594 3.51e-06 -0.188214 7e-07 breast cancer 15_79777420 rs166870 ENSG00000136371.10 MTHFS -119959 2.98e-07 -0.326388 3e-07 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 2.23e-23 0.414166 1e-15 breast cancer 15_90965985 rs77554484 ENSG00000258725.1 PRC1-AS1 -6875 4.88e-08 -0.461094 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 8.59e-10 0.215325 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 2.53e-07 -0.351938 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 8.59e-10 0.215325 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 2.53e-07 -0.351938 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 8.59e-10 0.215325 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 2.53e-07 -0.351938 2e-19 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 5.53e-22 -0.373551 4e-08 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 5.53e-22 -0.373551 3e-10 breast cancer 16_56497273 rs2303282 ENSG00000125124.11 BBS2 -23010 2.47e-25 -0.396018 3e-07 breast cancer 16_71475893 rs8050871 ENSG00000040199.18 PHLPP2 -248808 5.71e-07 -0.211221 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000167377.17 ZNF23 12798 7.9e-16 -0.383681 3e-06 breast cancer 17_2195889 rs16952006 ENSG00000167720.12 SRR -107494 9.64e-10 -0.521947 3e-06 breast cancer 17_30560116 rs111780165 ENSG00000176390.11 CRLF3 -264660 6.49e-05 0.297578 8e-08 breast cancer 17_30689342 rs8081187 ENSG00000176390.11 CRLF3 -135434 1.2e-05 0.312276 2e-07 breast cancer 17_30884649 rs7223535 ENSG00000176390.11 CRLF3 59873 1.35e-07 0.22884 4e-10 breast cancer 17_30887862 rs113934718 ENSG00000176390.11 CRLF3 63086 1.29e-07 0.228238 1e-08 breast cancer 17_30894259 rs62070652 ENSG00000176390.11 CRLF3 69483 1.29e-07 0.228238 1e-06 breast cancer 17_30894259 rs62070652 ENSG00000176390.11 CRLF3 69483 1.29e-07 0.228238 6e-09 breast cancer 17_45394123 rs4763 ENSG00000186868.15 MAPT -500259 1.16e-07 -0.315037 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 4.33e-37 0.98466 2e-08 breast cancer 17_45394123 rs4763 ENSG00000176681.14 LRRC37A -898610 4.65e-13 0.587133 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 6e-37 1.09796 2e-08 breast cancer 17_45394123 rs4763 ENSG00000225190.10 PLEKHM1 -96626 0.000163712 0.154649 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 1.33e-47 1.08956 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 1.12e-52 -1.12968 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 4.53e-71 1.22807 2e-08 breast cancer 17_45394123 rs4763 ENSG00000159314.11 ARHGAP27 -40298 2.95e-05 0.135661 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000073969.18 NSF -649547 4.36e-06 -0.160112 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 2.03e-09 0.402847 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 2.04e-18 0.646814 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 1.11e-67 1.13179 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 8.78e-69 1.14352 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000186868.15 MAPT 46740 5.39e-09 -0.320144 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 6.29e-52 1.15807 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 1.02e-78 -1.18928 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 2.61e-67 1.03694 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 8.28e-121 1.29732 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000108379.9 WNT3 -891936 4.47e-15 0.514525 8e-12 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 7.64e-82 1.21198 5e-08 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 1.07e-10 0.435422 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 1.2e-63 1.02722 5e-08 breast cancer 17_46751565 rs199533 ENSG00000073969.18 NSF 160896 1.52e-06 -0.168717 5e-08 breast cancer 17_46751565 rs199533 ENSG00000108379.9 WNT3 -81493 1.22e-15 0.528352 5e-08 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 5.81e-15 0.588514 5e-08 breast cancer 17_46751565 rs199533 ENSG00000186868.15 MAPT 857183 6.44e-09 -0.321195 5e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 2.01e-08 0.378201 2e-08 breast cancer 17_46788237 rs199498 ENSG00000186868.15 MAPT 893855 1.77e-06 -0.264352 2e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 2.46e-40 0.86607 2e-08 breast cancer 17_46788237 rs199498 ENSG00000108379.9 WNT3 -44821 3.92e-17 0.5481 2e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 4.14e-17 0.623804 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 7.31e-52 1.04172 2e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 2.39e-25 -0.496154 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000108924.13 HLF -285902 3.12e-05 -0.186644 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 1.59e-05 -0.163213 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 2.39e-25 -0.496154 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000108924.13 HLF -285902 3.12e-05 -0.186644 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 1.59e-05 -0.163213 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 2.39e-25 -0.496154 8e-09 breast cancer 17_54979110 rs6504950 ENSG00000108924.13 HLF -285902 3.12e-05 -0.186644 8e-09 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 1.59e-05 -0.163213 8e-09 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 2.39e-25 -0.496154 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000108924.13 HLF -285902 3.12e-05 -0.186644 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000141198.14 TOM1L1 79723 1.59e-05 -0.163213 1e-08 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 4.12e-15 -0.366103 6e-29 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 4.12e-15 -0.366103 2e-34 breast cancer 17_55135212 rs2628317 ENSG00000108924.13 HLF -129800 8.33e-05 -0.179862 4e-16 breast cancer 17_55135212 rs2628317 ENSG00000166263.13 STXBP4 166426 1.78e-16 -0.41238 4e-16 breast cancer 17_55135212 rs2628317 ENSG00000141198.14 TOM1L1 235825 8.72e-05 -0.151506 4e-16 breast cancer 17_74776908 rs62084913 ENSG00000109062.11 SLC9A3R1 27995 2.43e-05 -0.17372 9e-06 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 3.42e-16 -0.345114 4e-10 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 3.42e-16 -0.345114 6e-06 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 3.42e-16 -0.345114 5e-07 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 3.42e-16 -0.345114 1e-09 breast cancer 17_81211408 rs9913021 ENSG00000141577.13 CEP131 -11591 4.06e-06 -0.167924 2e-06 breast cancer 17_82597601 rs62079673 ENSG00000141580.15 WDR45B -50952 1.2e-07 0.252703 1e-06 breast cancer 17_82946434 rs898097 ENSG00000141560.14 FN3KRP 229751 7.8e-13 -0.413289 2e-06 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 1e-12 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 1e-12 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 9e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 9e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 7e-21 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 7e-21 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 4e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 4e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 2e-09 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 2e-09 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 8.88e-07 0.218766 2e-06 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 1.29e-09 0.34654 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 2.39e-09 -0.300242 2e-06 breast cancer 19_17282085 rs8100241 ENSG00000130312.6 MRPL34 -10747 2.58e-06 0.183479 4e-08 breast cancer 19_17282085 rs8100241 ENSG00000127220.5 ABHD8 -28151 5.21e-06 -0.156104 4e-08 breast cancer 19_17283315 rs2363956 ENSG00000127220.5 ABHD8 -26921 2.61e-05 -0.14668 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 3.51e-06 0.183945 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000127220.5 ABHD8 -26921 2.61e-05 -0.14668 2e-06 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 3.51e-06 0.183945 2e-06 breast cancer 19_18422832 rs7258465 ENSG00000175489.9 LRRC25 25215 2.81e-06 -0.1038 3e-28 breast cancer 19_18422832 rs7258465 ENSG00000130511.15 SSBP4 3968 1.43e-08 -0.163344 3e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.78e-08 -0.16155 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 1.91e-06 -0.104979 2e-31 breast cancer 19_18522945 rs172032 ENSG00000130511.15 SSBP4 104081 1.05e-06 -0.134037 1e-16 breast cancer 19_18522945 rs172032 ENSG00000175489.9 LRRC25 125328 1.43e-05 -0.0912653 1e-16 breast cancer 19_18522945 rs172032 ENSG00000105656.12 ELL 818 4.1e-06 0.128563 1e-16 breast cancer 19_19417997 rs1469713 ENSG00000187664.8 HAPLN4 155201 2.11e-15 0.408723 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000213996.12 TM6SF2 144606 7.15e-08 0.249548 1e-10 breast cancer 19_19434887 rs2965183 ENSG00000187664.8 HAPLN4 172091 2.11e-15 0.408723 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 7.15e-08 0.249548 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000187664.8 HAPLN4 172091 2.11e-15 0.408723 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 7.15e-08 0.249548 1e-11 breast cancer 19_19535463 rs2304098 ENSG00000187664.8 HAPLN4 272667 2.59e-15 0.409773 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000213996.12 TM6SF2 262072 4.02e-08 0.255475 2e-11 breast cancer 19_2226677 rs3815308 ENSG00000104885.17 DOT1L 62528 2.63e-05 0.139777 7e-06 breast cancer 19_2226677 rs3815308 ENSG00000065000.15 AP3D1 62212 1.82e-06 0.122728 7e-06 breast cancer 19_43779080 rs1685191 ENSG00000176222.8 ZNF404 -104971 1.24e-07 -0.242101 4e-20 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 2.17e-05 -0.179523 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 3.44e-11 -0.302059 5e-08 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 1.15e-21 -0.427216 2e-14 breast cancer 19_51869723 rs10411161 ENSG00000198093.10 ZNF649 -35317 1.56e-05 -0.26546 7e-06 breast cancer 19_51942133 rs8113308 ENSG00000269235.1 ZNF350-AS1 -7001 1.16e-07 0.44588 6e-07 breast cancer 2_171513371 rs11680449 ENSG00000071967.11 CYBRD1 -8876 6.35e-05 0.205634 4e-09 breast cancer 2_171568284 rs11675683 ENSG00000071967.11 CYBRD1 46037 4.06e-11 0.303872 4e-08 breast cancer 2_201258707 rs3769821 ENSG00000155749.12 FLACC1 -98691 1.63e-16 -0.381991 4e-18 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 2.79e-17 -0.426152 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 8.56e-20 -0.421198 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000064012.21 CASP8 54912 3.56e-06 0.183912 3e-09 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 2.79e-17 -0.426152 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.15e-16 -0.41925 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.15e-16 -0.41925 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.15e-16 -0.41925 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 1.15e-16 -0.41925 9e-14 breast cancer 2_201384985 rs2714486 ENSG00000155749.12 FLACC1 27587 9.44e-11 0.388573 7e-10 breast cancer 2_201384985 rs2714486 ENSG00000082146.12 STRADB -3017 0.0001398 0.209644 7e-10 breast cancer 2_201502866 rs77688320 ENSG00000155749.12 FLACC1 145468 2.22e-08 0.369849 3e-09 breast cancer 2_25068670 rs1971136 ENSG00000224165.5 DNAJC27-AS1 97280 6.2e-06 0.168676 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 9.23e-12 0.320405 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 7.41e-05 -0.139539 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 9.23e-12 0.320405 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 7.41e-05 -0.139539 5e-09 breast cancer 2_28897867 rs4577244 ENSG00000171103.10 TRMT61B 27566 2.36e-11 0.313344 2e-09 breast cancer 2_28897867 rs4577244 ENSG00000213639.9 PPP1CB 146227 2.52e-05 -0.147584 2e-09 breast cancer 20_34000289 rs2284378 ENSG00000101460.12 MAP1LC3A -546565 1.01e-06 0.162419 1e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 8.21e-07 0.163367 2e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 8.21e-07 0.163367 6e-06 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 8.94e-07 0.159423 3e-09 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 8.94e-07 0.159423 3e-06 breast cancer 20_39051206 rs742276 ENSG00000101447.14 FAM83D 124894 7.36e-11 -0.285894 9e-06 breast cancer 20_39051206 rs742276 ENSG00000101452.14 DHX35 88907 4.11e-05 -0.108355 9e-06 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 6.1e-17 -1.08513 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 6.1e-17 -1.08513 4e-07 breast cancer 22_38172826 rs738321 ENSG00000100156.10 SLC16A8 88733 6.54e-07 -0.1607 1e-13 breast cancer 22_38172826 rs738321 ENSG00000184381.18 PLA2G6 -32864 1.12e-06 0.134026 1e-13 breast cancer 22_38172826 rs738321 ENSG00000100156.10 SLC16A8 88733 6.54e-07 -0.1607 7e-14 breast cancer 22_38172826 rs738321 ENSG00000184381.18 PLA2G6 -32864 1.12e-06 0.134026 7e-14 breast cancer 22_38174306 rs4820318 ENSG00000184381.18 PLA2G6 -31384 2.06e-06 0.130501 1e-13 breast cancer 22_38174306 rs4820318 ENSG00000100156.10 SLC16A8 90213 7.08e-07 -0.159866 1e-13 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.04e-16 -0.811195 4e-06 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.04e-16 -0.811195 3e-17 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.04e-16 -0.811195 9e-14 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 2e-06 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 2e-06 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 5e-34 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 4e-34 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 2e-20 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 4e-14 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 9e-19 breast cancer 22_40480230 rs6001930 ENSG00000100399.15 CHADL -760704 0.000215462 -0.293904 2e-11 breast cancer 22_41323244 rs73176670 ENSG00000100197.20 CYP2D6 -807662 5.2e-07 0.668097 1e-08 breast cancer 22_41642782 rs73161324 ENSG00000100197.20 CYP2D6 -488124 0.000140171 0.564892 2e-09 breast cancer 22_42745087 rs4820477 ENSG00000128274.15 A4GALT 23789 3.71e-13 -0.25229 9e-07 breast cancer 3_14520620 rs1106333 ENSG00000144596.12 GRIP2 -35455 1.33e-05 0.391683 6e-08 breast cancer 3_156645453 rs2136690 ENSG00000240875.5 LINC00886 -171609 7.08e-12 -0.407601 4e-06 breast cancer 3_156927968 rs7637701 ENSG00000240875.5 LINC00886 110906 4.31e-27 -0.584153 1e-06 breast cancer 3_27608457 rs56138756 ENSG00000033867.16 SLC4A7 124037 8.66e-05 0.146445 7e-09 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 5.15e-07 0.469762 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 5.15e-07 0.469762 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 5.15e-07 0.469762 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 5.15e-07 0.469762 6e-15 breast cancer 3_46846708 rs56387622 ENSG00000188086.13 PRSS45P 101953 6.63e-12 0.605405 5e-19 breast cancer 3_49129027 rs61729152 ENSG00000182179.12 UBA7 -684919 0.000112243 0.389869 6e-06 breast cancer 4_103450498 rs10016947 ENSG00000164039.14 BDH2 350615 2.14e-06 0.372654 9e-06 breast cancer 4_57013626 rs4865169 ENSG00000084092.6 NOA1 34987 3.86e-06 0.145807 7e-06 breast cancer 5_10467590 rs1092913 ENSG00000145495.15 MARCHF6 113887 2.44e-05 -0.147439 2e-06 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 1.63e-25 0.652033 9e-06 breast cancer 5_128227188 rs36715 ENSG00000245937.7 SLC12A2-DT 144016 7.46e-12 0.400579 4e-06 breast cancer 5_132304843 rs6860806 ENSG00000233006.6 MIR3936HG -64805 1.53e-07 0.169487 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000072682.18 P4HA2 9528 1.28e-12 0.255723 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 1.08e-06 -0.15216 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197208.5 SLC22A4 10400 1.22e-05 0.15681 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000233006.6 MIR3936HG -64805 1.53e-07 0.169487 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000072682.18 P4HA2 9528 1.28e-12 0.255723 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 1.08e-06 -0.15216 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000197208.5 SLC22A4 10400 1.22e-05 0.15681 3e-08 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 7.92e-18 -0.311593 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 9.27e-07 -0.17941 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.89e-06 -0.155338 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 1.14e-08 -0.220094 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 7.92e-18 -0.311593 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 9.27e-07 -0.17941 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.89e-06 -0.155338 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 1.14e-08 -0.220094 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000072682.18 P4HA2 170940 7.92e-18 -0.311593 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197208.5 SLC22A4 171812 9.27e-07 -0.17941 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 2.89e-06 -0.155338 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 1.14e-08 -0.220094 1e-08 breast cancer 5_132497907 rs736801 ENSG00000197208.5 SLC22A4 203464 4.08e-06 0.171391 8e-08 breast cancer 5_132497907 rs736801 ENSG00000233006.6 MIR3936HG 128259 1.35e-05 0.147024 8e-08 breast cancer 5_132497907 rs736801 ENSG00000072682.18 P4HA2 202592 4.3e-10 0.235823 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197536.11 IRF1-AS1 87271 6.86e-12 0.265487 8e-08 breast cancer 5_149053986 rs250677 ENSG00000169247.11 SH3TC2 -9177 1.32e-07 0.321281 8e-06 breast cancer 5_154976135 rs6890610 ENSG00000155508.13 CNOT8 118582 1.38e-09 -0.237649 6e-06 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 3e-36 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 5e-09 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 3e-27 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 1e-39 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 7e-20 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 8.73e-05 0.273686 1e-08 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 1.12e-23 0.60872 2e-12 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 4.49e-29 0.829068 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 1.13e-45 -0.471879 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 5.47e-15 0.329607 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 5.52e-47 0.469193 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 2.33e-16 -0.338817 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 1.12e-26 -0.785633 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9e-16 -0.335367 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.85e-48 0.47585 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.01e-26 -0.792484 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9e-16 -0.335367 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.85e-48 0.47585 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.01e-26 -0.792484 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9e-16 -0.335367 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.85e-48 0.47585 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.01e-26 -0.792484 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 9e-16 -0.335367 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 8.85e-48 0.47585 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 1.01e-26 -0.792484 4e-09 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 1.91e-36 -0.42502 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 1.22e-16 0.629374 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 6.16e-10 0.261056 2e-06 breast cancer 6_122394099 rs74392007 ENSG00000025156.12 HSF2 -5447 6.98e-11 -0.415038 3e-07 breast cancer 6_122554525 rs76092474 ENSG00000025156.12 HSF2 154979 1.16e-07 -0.339861 3e-06 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 4.22e-17 -0.439071 4e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 4.22e-17 -0.439071 2e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 4.22e-17 -0.439071 8e-10 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 4.22e-17 -0.439071 3e-12 breast cancer 6_13713134 rs418053 ENSG00000010017.12 RANBP9 1570 6.98e-07 -0.154077 1e-13 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 5.77e-07 -0.155274 8e-09 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 5.77e-07 -0.155274 3e-14 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 5.77e-07 -0.155274 8e-13 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 5.77e-07 -0.155274 3e-07 breast cancer 6_13722291 rs204247 ENSG00000010017.12 RANBP9 10727 5.77e-07 -0.155274 4e-10 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 1.53e-30 -1.12429 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 1.45e-31 -1.14296 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 5.84e-37 -1.10411 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000124613.8 ZNF391 -911269 8e-06 0.475995 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000204789.4 ZNF204P -896875 0.00012672 0.227157 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000112812.15 PRSS16 -784355 1.67e-05 0.468778 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 3.86e-46 -1.20837 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000112812.15 PRSS16 -254200 1.35e-05 0.48993 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 1.44e-43 -1.22307 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000204789.4 ZNF204P -366720 0.000205359 0.227694 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000233822.4 H2BC15 -844259 0.000250616 -0.357147 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000124613.8 ZNF391 -381114 4.47e-05 0.45112 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000112812.15 PRSS16 59354 6.21e-06 0.488152 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 7.61e-38 -1.11229 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000216901.1 ZNF603P -869133 0.000233303 0.505896 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000204789.4 ZNF204P -53166 0.000351211 0.210767 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000233822.4 H2BC15 -530705 5.53e-05 -0.376966 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000124613.8 ZNF391 -67560 1.66e-06 0.506169 2e-09 breast cancer 6_27457865 rs34196306 ENSG00000112812.15 PRSS16 210164 6.12e-06 0.507476 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000204789.4 ZNF204P 97644 0.000265817 0.2233 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000233822.4 H2BC15 -379895 8.65e-05 -0.381545 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000124613.8 ZNF391 83250 2.47e-06 0.517354 1e-09 breast cancer 6_27873148 rs45509595 ENSG00000216901.1 ZNF603P -303040 8.9e-06 0.624693 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000197279.3 ZNF165 -207983 0.000280588 -0.464343 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000124613.8 ZNF391 498533 1.32e-05 0.474689 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000197062.11 ZSCAN26 -393862 0.000253811 -0.256803 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000112812.15 PRSS16 625447 0.000294459 0.404264 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000233822.4 H2BC15 35388 1.1e-05 -0.421392 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000219392.1 ZNF602P -242480 0.00020971 -0.555712 5e-09 breast cancer 6_28106103 rs34662244 ENSG00000197062.11 ZSCAN26 -160907 0.000211068 -0.252636 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000216901.1 ZNF603P -70085 1.92e-06 0.649081 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000219392.1 ZNF602P -9525 0.000186204 -0.544182 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000124613.8 ZNF391 731488 1.81e-06 0.503666 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197279.3 ZNF165 24972 0.00045724 -0.435557 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000233822.4 H2BC15 268343 1.43e-05 -0.404244 3e-09 breast cancer 6_28364364 rs13214023 ENSG00000219392.1 ZNF602P 248736 5.14e-05 -0.592856 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000137185.11 ZSCAN9 139478 0.000162173 0.304749 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000197062.11 ZSCAN26 97354 0.000107311 -0.265775 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000124613.8 ZNF391 989749 3.58e-06 0.493114 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000233822.4 H2BC15 526604 9.65e-06 -0.415084 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000197279.3 ZNF165 283233 0.000289132 -0.453513 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000216901.1 ZNF603P 188176 8.75e-06 0.611898 1e-09 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.39e-06 0.172981 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 1.57e-07 0.364482 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000232040.2 ZBED9 342231 1.22e-06 -0.289854 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 1.09e-06 0.277536 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.39e-06 0.172981 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 1.57e-07 0.364482 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000232040.2 ZBED9 342231 1.22e-06 -0.289854 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 1.09e-06 0.277536 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.39e-06 0.172981 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 1.57e-07 0.364482 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000232040.2 ZBED9 342231 1.22e-06 -0.289854 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 1.09e-06 0.277536 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 4.39e-06 0.172981 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000216901.1 ZNF603P 782255 1.57e-07 0.364482 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000232040.2 ZBED9 342231 1.22e-06 -0.289854 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 1.09e-06 0.277536 7e-08 breast cancer 6_29280372 rs3130834 ENSG00000204644.9 ZFP57 -400738 1.76e-14 1.06615 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000230795.3 HLA-K -646806 2.3e-05 -0.597531 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204622.11 HLA-J -725599 1.58e-05 -0.527228 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204632.11 HLA-G -546595 0.000317621 -0.512013 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000281831.1 HCP5B -593411 4.07e-07 0.709735 5e-09 breast cancer 6_29388554 rs9257809 ENSG00000176998.4 HCG4 -403882 7.28e-05 -0.553068 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204644.9 ZFP57 -292556 2.48e-16 1.11616 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000230795.3 HLA-K -538624 9.21e-08 -0.737022 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000066379.14 POLR1H -673087 4.77e-05 -0.340014 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000206503.12 HLA-A -552706 1.84e-05 0.465884 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000228078.1 HLA-U -545547 7.04e-06 0.683486 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000281831.1 HCP5B -485229 5.79e-09 0.798959 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204622.11 HLA-J -617417 9.46e-07 -0.587682 3e-08 breast cancer 6_29509637 rs1233480 ENSG00000066379.14 POLR1H -552004 0.000155223 -0.272352 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000176998.4 HCG4 -282799 0.000204255 -0.445775 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000230795.3 HLA-K -417541 1.11e-06 -0.579976 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000281831.1 HCP5B -364146 1.82e-07 0.618544 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204644.9 ZFP57 -171473 2.16e-13 0.867858 5e-08 breast cancer 6_29693039 rs3116813 ENSG00000146112.11 PPP1R18 -994856 8.58e-14 -0.440077 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000281831.1 HCP5B -180744 4.62e-09 0.798528 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000228078.1 HLA-U -241062 3.79e-06 0.698008 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000176998.4 HCG4 -99397 8.28e-07 -0.678058 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204632.11 HLA-G -133928 6.74e-05 -0.553623 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204622.11 HLA-J -312932 3.22e-07 -0.607555 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000066379.14 POLR1H -368602 0.000150947 -0.315286 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204644.9 ZFP57 11929 1.91e-18 1.17674 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000206503.12 HLA-A -248221 9.6e-07 0.527005 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000230795.3 HLA-K -234139 1.89e-07 -0.714899 6e-07 breast cancer 6_29785031 rs147680653 ENSG00000228078.1 HLA-U -149070 1.12e-06 0.731482 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000281831.1 HCP5B -88752 8.8e-10 0.830364 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000206503.12 HLA-A -156229 3.85e-07 0.543425 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000146112.11 PPP1R18 -902864 4.65e-14 -0.442922 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000230795.3 HLA-K -142147 1.16e-07 -0.724259 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000137312.14 FLOT1 -957702 6.23e-07 0.249669 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000066379.14 POLR1H -276610 9.64e-05 -0.323139 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204622.11 HLA-J -220940 3.44e-07 -0.604101 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204644.9 ZFP57 103921 3.38e-19 1.19558 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000176998.4 HCG4 -7405 1.79e-06 -0.65561 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204632.11 HLA-G -41936 0.000117301 -0.533723 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000204622.11 HLA-J -123028 2.58e-07 -0.593793 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000206503.12 HLA-A -58317 3.19e-07 0.532332 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000230795.3 HLA-K -44235 3.99e-08 -0.729029 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000281831.1 HCP5B 9160 6.69e-11 0.857075 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000176998.4 HCG4 90507 1.23e-06 -0.647679 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000066379.14 POLR1H -178698 0.000167766 -0.303699 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000146112.11 PPP1R18 -804952 6.59e-17 -0.472759 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000228078.1 HLA-U -51158 4.49e-06 0.671969 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204623.9 ZNRD1ASP -178310 6.42e-05 -0.213964 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000137312.14 FLOT1 -859790 3.02e-06 0.228169 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204644.9 ZFP57 201833 3.86e-17 1.10123 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204632.11 HLA-G 55976 1.04e-05 -0.592225 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000204622.11 HLA-J -2788 1.79e-06 -0.556686 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000281831.1 HCP5B 129400 1.78e-10 0.845788 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000176998.4 HCG4 210747 6.03e-06 -0.610598 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000146112.11 PPP1R18 -684712 1.49e-17 -0.485488 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204644.9 ZFP57 322073 1.46e-16 1.09168 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000206503.12 HLA-A 61923 4.72e-07 0.529228 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000066379.14 POLR1H -58458 0.000182714 -0.304498 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000137312.14 FLOT1 -739550 1.26e-06 0.238387 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000230795.3 HLA-K 76005 4.83e-07 -0.676226 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204623.9 ZNRD1ASP -58070 2.27e-05 -0.228308 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204632.11 HLA-G 176216 1.18e-05 -0.593654 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000228078.1 HLA-U 69082 2.45e-05 0.624656 7e-07 breast cancer 6_30107326 rs2523992 ENSG00000146112.11 PPP1R18 -580569 9.76e-13 -0.326534 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204623.9 ZNRD1ASP 46073 1.7e-07 -0.221199 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000137312.14 FLOT1 -635407 1.56e-06 0.186937 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204644.9 ZFP57 426216 7.36e-07 0.535239 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000176998.4 HCG4 314890 4.49e-08 -0.579359 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000230795.3 HLA-K 180148 0.000141928 -0.407673 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000281831.1 HCP5B 233543 1.12e-05 0.468214 2e-07 breast cancer 6_30365728 rs3094054 ENSG00000206503.12 HLA-A 424468 9.51e-06 0.470582 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204536.13 CCHCR1 -792510 4.39e-06 0.367026 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000228078.1 HLA-U 431627 0.000288189 0.542554 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204525.16 HLA-C -906377 1.28e-07 0.630564 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000281831.1 HCP5B 491945 1.56e-07 0.707429 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204531.17 POU5F1 -815003 1.95e-05 0.488732 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000137312.14 FLOT1 -377005 3.17e-10 0.307772 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000176998.4 HCG4 573292 1.69e-05 -0.585379 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204540.10 PSORS1C1 -749022 1.27e-06 -0.59243 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204622.11 HLA-J 359757 2.19e-06 -0.555938 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000146112.11 PPP1R18 -322167 5.94e-22 -0.543803 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000230795.3 HLA-K 438550 9.32e-07 -0.664376 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204632.11 HLA-G 538761 0.000153563 -0.518408 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204644.9 ZFP57 684618 8.55e-13 0.964442 1e-07 breast cancer 6_30374976 rs115707823 ENSG00000066379.14 POLR1H 313335 8.89e-05 -0.287458 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 1.24e-05 0.470835 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 0.000196571 -0.455457 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 0.000144651 -0.40225 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000146112.11 PPP1R18 -312919 1.85e-14 -0.397737 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204536.13 CCHCR1 -783262 6.74e-05 0.286569 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 7.03e-11 0.793051 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 5.74e-08 0.654871 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000137312.14 FLOT1 -367757 7.09e-06 0.199883 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000229274.1 LINC02829 877467 0.0001767 0.374813 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000066379.14 POLR1H 313335 8.89e-05 -0.287458 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204525.16 HLA-C -897129 1.24e-05 0.470835 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 0.000196571 -0.455457 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 0.000144651 -0.40225 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000146112.11 PPP1R18 -312919 1.85e-14 -0.397737 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204536.13 CCHCR1 -783262 6.74e-05 0.286569 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 7.03e-11 0.793051 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 501193 5.74e-08 0.654871 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000137312.14 -367757 7.09e-06 0.199883 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000229274.1 LINC02829 877467 0.0001767 0.374813 5e-07 breast cancer 6_30473526 rs3132615 ENSG00000204536.13 CCHCR1 -684712 3.5e-07 0.38373 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204644.9 ZFP57 792416 1.34e-10 0.825567 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000281831.1 HCP5B 599743 2.2e-05 0.545466 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204531.17 POU5F1 -707205 1.45e-05 0.469226 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204525.16 HLA-C -798579 2.05e-06 0.538594 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000146112.11 PPP1R18 -214369 5.3e-22 -0.514984 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000137312.14 FLOT1 -269207 1.67e-11 0.31024 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000206503.12 HLA-A 532266 5.45e-06 0.45672 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000176998.4 HCG4 681090 1.05e-05 -0.566906 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000230795.3 HLA-K 546348 6.78e-05 -0.513693 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204622.11 HLA-J 467555 2.81e-05 -0.466961 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204540.10 PSORS1C1 -641224 8.13e-06 -0.517617 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000137331.11 IER3 -271028 9.1e-05 0.255397 2e-06 breast cancer 6_30576624 rs3132610 ENSG00000204525.16 HLA-C -695481 1.68e-08 0.649714 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000206337.10 HCP5 -886747 0.000115042 -0.227772 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204644.9 ZFP57 895514 4.6e-11 0.863994 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137331.11 IER3 -167930 0.000194011 0.248985 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204632.11 HLA-G 749657 8.43e-05 -0.520486 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204536.13 CCHCR1 -581614 1.04e-07 0.409033 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000281831.1 HCP5B 702841 5.02e-06 0.598677 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000146112.11 PPP1R18 -111271 3.96e-24 -0.54941 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204540.10 PSORS1C1 -538126 8.32e-08 -0.631518 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204622.11 HLA-J 570653 0.000162541 -0.431067 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000176998.4 HCG4 784188 3.29e-06 -0.610897 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137312.14 FLOT1 -166109 3.23e-11 0.313022 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204531.17 POU5F1 -604107 1.38e-06 0.532369 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000206503.12 HLA-A 635364 3.72e-05 0.424857 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000230795.3 HLA-K 649446 3.92e-05 -0.541791 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204516.9 MICB -918257 1.87e-11 0.712911 1e-06 breast cancer 6_30682249 rs9262142 ENSG00000204540.10 PSORS1C1 -432501 8.32e-08 -0.631518 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204622.11 HLA-J 676278 0.000162541 -0.431067 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000146112.11 PPP1R18 -5646 3.96e-24 -0.54941 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204525.16 HLA-C -589856 1.68e-08 0.649714 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137331.11 IER3 -62305 0.000194011 0.248985 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000230795.3 HLA-K 755071 3.92e-05 -0.541791 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204632.11 HLA-G 855282 8.43e-05 -0.520486 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000240053.8 LY6G5B -987918 6.58e-09 0.280168 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000281831.1 HCP5B 808466 5.02e-06 0.598677 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204516.9 MICB -812632 1.87e-11 0.712911 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000206503.12 HLA-A 740989 3.72e-05 0.424857 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204536.13 CCHCR1 -475989 1.04e-07 0.409033 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137312.14 FLOT1 -60484 3.23e-11 0.313022 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000176998.4 HCG4 889813 3.29e-06 -0.610897 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000206337.10 HCP5 -781122 0.000115042 -0.227772 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204531.17 POU5F1 -498482 1.38e-06 0.532369 3e-06 breast cancer 6_30793795 rs3129984 ENSG00000204536.13 CCHCR1 -364443 4.99e-07 0.384862 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000146112.11 PPP1R18 105900 6.18e-23 -0.53332 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000281831.1 HCP5B 920012 2.04e-05 0.556404 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204540.10 PSORS1C1 -320955 1.98e-08 -0.655646 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204531.17 POU5F1 -386936 1.43e-05 0.476969 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204525.16 HLA-C -478310 3.43e-08 0.631941 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204632.11 HLA-G 966828 0.000133427 -0.502714 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204516.9 MICB -701086 1.33e-11 0.713027 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000230795.3 HLA-K 866617 0.000273188 -0.47776 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000228078.1 HLA-U 859694 0.000119296 0.552633 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000240053.8 LY6G5B -876372 6.15e-09 0.278854 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137312.14 FLOT1 51062 4.76e-11 0.308461 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000206503.12 HLA-A 852535 9.32e-06 0.452694 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204622.11 HLA-J 787824 0.000133399 -0.433688 8e-06 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 3.9e-06 -0.350107 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 5.73e-05 -0.304829 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000234745.10 HLA-B -9438 1.52e-06 0.211824 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 5.43e-05 -0.318699 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 8.33e-09 -0.323296 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204540.10 PSORS1C1 232254 3.9e-06 -0.350107 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 5.73e-05 -0.304829 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000234745.10 HLA-B -9438 1.52e-06 0.211824 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 5.43e-05 -0.318699 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 8.33e-09 -0.323296 9e-06 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 3.39e-16 -0.492063 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000196301.3 HLA-DRB9 226196 1.95e-06 0.386578 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 3.17e-08 0.454843 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 7.13e-08 -0.363464 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000229391.7 HLA-DRB6 139674 1.76e-06 0.35255 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 2.03e-14 0.60455 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 3.99e-09 -0.505146 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 3.39e-16 -0.492063 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000196301.3 HLA-DRB9 226196 1.95e-06 0.386578 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 3.17e-08 0.454843 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 7.13e-08 -0.363464 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000229391.7 HLA-DRB6 139674 1.76e-06 0.35255 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000232629.8 HLA-DQB2 -63838 2.03e-14 0.60455 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 3.99e-09 -0.505146 5e-07 breast cancer 6_33272092 rs17215231 ENSG00000235863.3 B3GALT4 -5040 1.57e-05 0.216822 9e-13 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 1.73e-60 -0.793773 9e-13 breast cancer 6_43259403 rs111342015 ENSG00000112667.12 DNPH1 29919 1.3e-08 -0.320433 9e-08 breast cancer 6_43259403 rs111342015 ENSG00000137171.14 KLC4 218626 6.21e-05 0.196418 9e-08 breast cancer 7_100437651 rs117911427 ENSG00000121716.20 PILRB 85475 8.98e-08 0.83591 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000085514.15 PILRA 64206 5.49e-07 0.653007 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000242294.6 STAG3L5P 101239 1.98e-08 0.980569 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000106290.14 TAF6 318084 9.39e-05 -0.352654 7e-06 breast cancer 7_102478605 rs369574511 ENSG00000260097.2 SPDYE6 122161 7.24e-05 0.298287 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 3.95e-20 -0.31866 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000170667.14 RASA4B -39176 4.58e-06 -0.291664 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000168255.19 POLR2J3 -94051 0.000109044 -0.28158 2e-07 breast cancer 7_103022031 rs7458786 ENSG00000161036.12 LRWD1 557102 8.12e-05 0.188112 9e-06 breast cancer 7_103251337 rs6946892 ENSG00000161036.12 LRWD1 786408 1.04e-05 -0.159842 1e-07 breast cancer 7_130969092 rs2048672 ENSG00000231721.6 LINC-PINT -141003 2.3e-05 -0.0925289 6e-06 breast cancer 7_144351809 rs62485509 ENSG00000170356.8 OR2A20P 98852 2.14e-07 0.491865 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000204959.4 ARHGEF34P 64843 9.72e-08 -0.474299 4e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 1e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 1e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 7e-12 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 7e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 4e-10 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 4e-10 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 2e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 2e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 1e-08 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 1e-08 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 1.32e-08 -0.455568 7e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 6.08e-07 0.428277 7e-11 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 1e-12 0.663521 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000263001.5 GTF2I 38706 9.86e-14 0.417577 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277053.4 GTF2IP1 -541323 2.13e-13 -0.69736 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000184616.8 SPDYE12 -216883 3.43e-06 0.558072 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000123965.13 PMS2P5 -197743 1.53e-10 0.809024 5e-06 breast cancer 8_17926905 rs11779988 ENSG00000078674.17 PCM1 4065 2.13e-05 -0.1183 2e-06 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 9.3e-13 0.429365 6e-09 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 9.3e-13 0.429365 3e-07 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 9.3e-13 0.429365 1e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 9.3e-13 0.429365 3e-08 breast cancer 8_22634616 rs6558174 ENSG00000241852.9 C8orf58 35015 6.98e-05 0.157791 3e-06 breast cancer 9_103912867 rs718857 ENSG00000270332.1 SMC2-DT -180206 6.45e-06 0.210853 2e-06 breast cancer 9_103912867 rs718857 ENSG00000136824.18 SMC2 -181393 4.56e-05 -0.1486 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 1.43e-10 -0.245195 3e-08 breast cancer 9_104094512 rs4742903 ENSG00000270332.1 SMC2-DT 1439 2.67e-10 0.310992 3e-08 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 1.43e-10 -0.245195 2e-07 breast cancer 9_104094512 rs4742903 ENSG00000270332.1 SMC2-DT 1439 2.67e-10 0.310992 2e-07