DISEASE CHR_POS SNPS ENSEMBLE_ID GENE_NAME TSS_DISTANCE GTEx_PVALUE GTEx_SLOPE GWAS_PVALUE breast cancer 1_100414772 rs612683 ENSG00000137996.12 RTCA 148565 0.000137091 0.118507 3e-07 breast cancer 1_109637134 rs17024629 ENSG00000134222.16 PSRC1 353948 9.86e-05 0.185088 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 3.79e-14 0.498324 3e-08 breast cancer 1_109637134 rs17024629 ENSG00000134222.16 PSRC1 353948 9.86e-05 0.185088 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 3.79e-14 0.498324 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000134222.16 PSRC1 353948 9.86e-05 0.185088 1e-06 breast cancer 1_109637134 rs17024629 ENSG00000168765.16 GSTM4 -18947 3.79e-14 0.498324 1e-06 breast cancer 1_113903258 rs7513707 ENSG00000226167.1 AP4B1-AS1 46623 8.21e-06 -0.24512 2e-11 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.33e-05 -0.240183 2e-08 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.33e-05 -0.240183 3e-09 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.33e-05 -0.240183 5e-11 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.33e-05 -0.240183 1e-09 breast cancer 1_113905767 rs11552449 ENSG00000226167.1 AP4B1-AS1 49132 1.33e-05 -0.240183 6e-07 breast cancer 1_118488075 rs10923574 ENSG00000231365.5 WARS2-AS1 -652384 0.000171122 0.160981 4e-07 breast cancer 1_119716347 rs666930 ENSG00000092621.11 PHGDH 56549 3.02e-08 -0.133 5e-08 breast cancer 1_121121848 rs369304377 ENSG00000275538.1 RNVU1-19 270863 3.95e-05 0.206926 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000273136.6 NBPF26 397925 1.73e-08 0.32756 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000171943.11 SRGAP2C -62962 6.44e-12 -0.161675 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000226067.6 LINC00623 169409 4.4e-07 -0.295219 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000270231.3 NBPF8 685495 2.7e-06 -0.206115 2e-29 breast cancer 1_121121848 rs369304377 ENSG00000223345.3 H2BP1 4591 0.000187077 0.205361 2e-29 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 2e-52 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 2e-26 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 9e-13 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 3e-27 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 8e-09 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 4e-20 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 8e-54 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 5e-08 breast cancer 1_121538815 rs11249433 ENSG00000223345.3 H2BP1 421558 8.34e-06 0.240807 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000226067.6 LINC00623 586376 4.51e-05 -0.236352 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000273136.6 NBPF26 814892 9.38e-08 0.306495 7e-10 breast cancer 1_121538815 rs11249433 ENSG00000171943.11 SRGAP2C 354005 2.03e-09 -0.140024 7e-10 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.19e-15 -0.274936 5e-09 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 7.42e-06 0.254916 5e-09 breast cancer 1_145790097 rs12405132 ENSG00000131788.15 PIAS3 -69739 3.12e-05 -0.148091 5e-09 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.19e-15 -0.274936 8e-09 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 7.42e-06 0.254916 8e-09 breast cancer 1_145790097 rs12405132 ENSG00000131788.15 PIAS3 -69739 3.12e-05 -0.148091 8e-09 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.19e-15 -0.274936 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 7.42e-06 0.254916 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000131788.15 PIAS3 -69739 3.12e-05 -0.148091 6e-10 breast cancer 1_145790097 rs12405132 ENSG00000198483.12 ANKRD35 -95769 1.19e-15 -0.274936 2e-07 breast cancer 1_145790097 rs12405132 ENSG00000186364.11 NUDT17 -55532 7.42e-06 0.254916 2e-07 breast cancer 1_145790097 rs12405132 ENSG00000131788.15 PIAS3 -69739 3.12e-05 -0.148091 2e-07 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.29e-08 -0.216079 5e-11 breast cancer 1_155176305 rs4971059 ENSG00000160766.14 GBAP1 -51117 2.29e-08 -0.216079 2e-10 breast cancer 1_155212052 rs2974935 ENSG00000160766.14 GBAP1 -15370 3.08e-12 -0.241536 2e-07 breast cancer 1_155212052 rs2974935 ENSG00000169231.13 THBS3 4071 4.76e-12 0.217204 2e-07 breast cancer 1_155212373 rs2075570 ENSG00000169231.13 THBS3 4392 4.22e-12 0.217519 5e-06 breast cancer 1_155212373 rs2075570 ENSG00000160766.14 GBAP1 -15049 1.45e-12 -0.244766 5e-06 breast cancer 1_155216951 rs1057941 ENSG00000160766.14 GBAP1 -10471 1.29e-12 -0.25892 2e-07 breast cancer 1_155216951 rs1057941 ENSG00000169231.13 THBS3 8970 9.27e-05 0.131889 2e-07 breast cancer 1_155302483 rs7524950 ENSG00000143622.10 RIT1 -608921 1.46e-05 -0.158702 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000169231.13 THBS3 94502 8.93e-05 0.13493 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000203761.5 MSTO2P -443346 7.28e-07 -0.157321 3e-09 breast cancer 1_155302483 rs7524950 ENSG00000143630.9 HCN3 24900 4.16e-07 -0.135655 3e-09 breast cancer 1_155446537 rs10796944 ENSG00000143622.10 RIT1 -464867 1.04e-05 -0.182225 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000143630.9 HCN3 168954 9.4e-05 -0.118877 7e-10 breast cancer 1_155446537 rs10796944 ENSG00000203761.5 MSTO2P -299292 3.19e-11 -0.235461 7e-10 breast cancer 1_155587180 rs12091730 ENSG00000203761.5 MSTO2P -158649 1.37e-11 -0.241664 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000143622.10 RIT1 -324224 1.26e-05 -0.182085 2e-10 breast cancer 1_155587180 rs12091730 ENSG00000143630.9 HCN3 309597 5.28e-05 -0.124013 2e-10 breast cancer 1_155697170 rs348196 ENSG00000203761.5 MSTO2P -48659 1.87e-15 -0.271503 2e-08 breast cancer 1_155697170 rs348196 ENSG00000143622.10 RIT1 -214234 1.3e-07 -0.211252 2e-08 breast cancer 1_155697170 rs348196 ENSG00000143630.9 HCN3 419587 5.53e-05 -0.119327 2e-08 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 6.87e-69 0.47452 7e-07 breast cancer 1_156183252 rs11264454 ENSG00000196189.12 SEMA4A 35886 6.87e-69 0.47452 2e-08 breast cancer 1_16013277 rs1763604 ENSG00000186510.11 CLCNKA -5598 3.72e-06 0.129556 7e-09 breast cancer 1_168127440 rs60504827 ENSG00000143164.15 DCAF6 191399 4.03e-08 0.255646 2e-07 breast cancer 1_18480845 rs2992756 ENSG00000179023.8 KLHDC7A -137 1.81e-09 0.29938 5e-17 breast cancer 1_18480845 rs2992756 ENSG00000179023.8 KLHDC7A -137 1.81e-09 0.29938 2e-15 breast cancer 1_201468704 rs35383942 ENSG00000174307.6 PHLDA3 -533 3.76e-06 0.312012 4e-13 breast cancer 1_201468704 rs35383942 ENSG00000174307.6 PHLDA3 -533 3.76e-06 0.312012 6e-07 breast cancer 1_204546897 rs2290854 ENSG00000133056.13 PIK3C2B 52173 1.14e-05 -0.114935 1e-07 breast cancer 1_204549714 rs4245739 ENSG00000133056.13 PIK3C2B 54990 3.92e-06 -0.129563 8e-18 breast cancer 1_204549714 rs4245739 ENSG00000133056.13 PIK3C2B 54990 3.92e-06 -0.129563 2e-12 breast cancer 1_204549714 rs4245739 ENSG00000133056.13 PIK3C2B 54990 3.92e-06 -0.129563 4e-06 breast cancer 1_204549714 rs4245739 ENSG00000133056.13 PIK3C2B 54990 3.92e-06 -0.129563 6e-15 breast cancer 1_204549714 rs4245739 ENSG00000133056.13 PIK3C2B 54990 3.92e-06 -0.129563 3e-23 breast cancer 1_207903511 rs2724379 ENSG00000284237.1 LINC02767 -55781 1.36e-28 -0.47694 2e-07 breast cancer 1_45918469 rs12077974 ENSG00000159588.14 CCDC17 294412 4.57e-16 -0.340568 2e-07 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 0.000233168 0.124087 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 1.39e-13 0.308182 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000171357.5 LURAP1 -68089 0.00020263 -0.159463 3e-10 breast cancer 1_46135245 rs1707302 ENSG00000117480.15 FAAH -259020 0.000233168 0.124087 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000159588.14 CCDC17 511188 1.39e-13 0.308182 3e-08 breast cancer 1_46135245 rs1707302 ENSG00000171357.5 LURAP1 -68089 0.00020263 -0.159463 3e-08 breast cancer 1_8035440 rs225132 ENSG00000116288.12 PARK7 81149 1.2e-07 0.126383 3e-06 breast cancer 1_8326670 rs9628987; rs7535752 ENSG00000162426.14 SLC45A1 8844 1.1e-05 0.177583 5e-06 breast cancer 1_91555907 rs12134245 ENSG00000097046.12 CDC7 55014 2.67e-53 -0.534191 4e-06 breast cancer 10_11806793 rs12358475 ENSG00000134463.14 ECHDC3 64427 2.05e-05 0.245389 2e-06 breast cancer 10_121865675 rs10510102 ENSG00000226864.2 ATE1-AS1 -62637 7.98e-06 0.308627 2e-06 breast cancer 10_121904429 rs7899628 ENSG00000226864.2 ATE1-AS1 -23883 1.44e-15 -0.43596 9e-10 breast cancer 10_21522558 rs11012730 ENSG00000078403.16 MLLT10 -2117 0.000258128 -0.0797398 3e-10 breast cancer 10_27080233 rs7918232 ENSG00000120539.14 MASTL -75034 4.31e-32 0.568076 8e-06 breast cancer 10_5752689 rs55910451 ENSG00000057608.16 GDI2 -89443 5.06e-18 -0.255661 4e-07 breast cancer 10_92172529 rs72807246 ENSG00000198060.9 MARCHF5 -118634 1.78e-09 -0.188523 3e-06 breast cancer 10_92172529 rs72807246 ENSG00000228701.1 TNKS2-DT 374238 1.23e-09 0.525804 3e-06 breast cancer 11_111636465 rs505372 ENSG00000137720.7 C11orf1 -242470 2.03e-07 0.158931 3e-06 breast cancer 11_111636465 rs505372 ENSG00000170145.4 SIK2 34074 1.92e-05 -0.124322 3e-06 breast cancer 11_111636465 rs505372 ENSG00000109846.7 CRYAB -287257 1.88e-10 -0.206605 3e-06 breast cancer 11_111765903 rs643506 ENSG00000137720.7 C11orf1 -113032 3.51e-05 -0.121593 2e-07 breast cancer 11_111765903 rs643506 ENSG00000109846.7 CRYAB -157819 7.8e-07 0.154478 2e-07 breast cancer 11_117214494 rs77683187 ENSG00000160613.12 PCSK7 -18031 1.98e-06 0.240376 2e-06 breast cancer 11_117214494 rs77683187 ENSG00000149577.15 SIDT2 35761 1.1e-06 0.170292 2e-06 breast cancer 11_120362917 rs7924772 ENSG00000181264.8 TLCD5 37788 2.66e-10 0.200001 4e-08 breast cancer 11_1871355 rs4980389 ENSG00000232987.1 LINC01219 -119741 8.68e-09 0.31171 4e-07 breast cancer 11_1871355 rs4980389 ENSG00000226416.1 MRPL23-AS1 -118565 5.1e-07 0.272781 4e-07 breast cancer 11_1871355 rs4980389 ENSG00000130595.17 TNNT3 -48207 4.2e-35 0.574054 4e-07 breast cancer 11_1874478 rs4980386 ENSG00000226416.1 MRPL23-AS1 -115442 1.16e-07 0.286477 9e-17 breast cancer 11_1874478 rs4980386 ENSG00000232987.1 LINC01219 -116618 1.56e-09 0.32542 9e-17 breast cancer 11_1874478 rs4980386 ENSG00000130595.17 TNNT3 -45084 2.8e-36 0.58061 9e-17 breast cancer 11_1877434 rs1973765 ENSG00000130595.17 TNNT3 -42128 1.01e-36 0.576248 1e-37 breast cancer 11_1877434 rs1973765 ENSG00000232987.1 LINC01219 -113662 2.38e-09 0.31778 1e-37 breast cancer 11_1877434 rs1973765 ENSG00000226416.1 MRPL23-AS1 -112486 2.08e-07 0.277287 1e-37 breast cancer 11_1880867 rs4980383 ENSG00000232987.1 LINC01219 -110229 5.33e-06 -0.256534 3e-06 breast cancer 11_1880867 rs4980383 ENSG00000130595.17 TNNT3 -38695 4.93e-20 -0.456371 3e-06 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 6.5e-07 -0.279367 3e-06 breast cancer 11_1880867 rs4980383 ENSG00000232987.1 LINC01219 -110229 5.33e-06 -0.256534 9e-09 breast cancer 11_1880867 rs4980383 ENSG00000130595.17 TNNT3 -38695 4.93e-20 -0.456371 9e-09 breast cancer 11_1880867 rs4980383 ENSG00000226416.1 MRPL23-AS1 -109053 6.5e-07 -0.279367 9e-09 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 2e-11 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 2e-11 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 2e-11 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 3e-09 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 2e-13 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 1e-18 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 6e-21 breast cancer 11_1887776 rs3817198 ENSG00000226416.1 MRPL23-AS1 -102144 3.29e-11 -0.379199 1e-10 breast cancer 11_1887776 rs3817198 ENSG00000130595.17 TNNT3 -31786 2.32e-16 -0.424261 1e-10 breast cancer 11_1887776 rs3817198 ENSG00000232987.1 LINC01219 -103320 2.2e-11 -0.383064 1e-10 breast cancer 11_1892909 rs576603 ENSG00000232987.1 LINC01219 -98187 1.37e-12 0.38162 2e-08 breast cancer 11_1892909 rs576603 ENSG00000226416.1 MRPL23-AS1 -97011 2.41e-08 0.303135 2e-08 breast cancer 11_1892909 rs576603 ENSG00000130595.17 TNNT3 -26653 3.04e-39 0.604716 2e-08 breast cancer 11_1920716 rs909116 ENSG00000130595.17 TNNT3 1154 6.19e-21 0.455057 7e-07 breast cancer 11_1920716 rs909116 ENSG00000226416.1 MRPL23-AS1 -69204 2.51e-05 0.231773 7e-07 breast cancer 11_47325389 rs11039183 ENSG00000172247.3 C1QTNF4 -269270 0.000269242 0.18228 6e-06 breast cancer 11_47325389 rs11039183 ENSG00000165912.15 PACSIN3 138946 9.75e-06 -0.123528 6e-06 breast cancer 11_47325389 rs11039183 ENSG00000134575.9 ACP2 76483 0.000301967 0.122543 6e-06 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 0.00033172 0.0640507 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.44e-11 0.269444 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 4.68e-07 -0.280225 3e-07 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 0.00033172 0.0640507 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.44e-11 0.269444 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 4.68e-07 -0.280225 1e-10 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 0.00033172 0.0640507 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.44e-11 0.269444 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 4.68e-07 -0.280225 2e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 0.00033172 0.0640507 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.44e-11 0.269444 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 4.68e-07 -0.280225 9e-12 breast cancer 11_65815595 rs3903072 ENSG00000175334.7 BANF1 -186582 0.00033172 0.0640507 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172543.7 CTSW -64214 3.44e-11 0.269444 6e-12 breast cancer 11_65815595 rs3903072 ENSG00000172803.17 SNX32 -18046 4.68e-07 -0.280225 6e-12 breast cancer 11_65935052 rs617791 ENSG00000172803.17 SNX32 101411 1.04e-08 -0.323378 7e-06 breast cancer 11_65935052 rs617791 ENSG00000172543.7 CTSW 55243 1.58e-05 0.1816 7e-06 breast cancer 11_65935052 rs617791 ENSG00000175376.8 EIF1AD -67026 6.41e-15 -0.165949 7e-06 breast cancer 11_65935052 rs617791 ENSG00000175334.7 BANF1 -67125 2.63e-09 0.107013 7e-06 breast cancer 11_66301747 rs1783730 ENSG00000174791.10 RIN1 -35093 0.000124788 -0.08367 3e-07 breast cancer 11_66324772 rs118151305 ENSG00000175376.8 EIF1AD 322694 3.22e-06 -0.17308 6e-09 breast cancer 11_66843174 rs7570 ENSG00000173653.7 RCE1 -238 2.85e-05 0.125536 8e-06 breast cancer 11_66843174 rs7570 ENSG00000248746.5 ACTN3 296779 4.09e-05 0.275818 8e-06 breast cancer 11_66843174 rs7570 ENSG00000173621.8 LRFN4 -13473 6.36e-09 -0.213653 8e-06 breast cancer 11_66843174 rs7570 ENSG00000174080.10 CTSF 274333 1.22e-14 0.199697 8e-06 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 9.05e-08 0.0947191 3e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 3.81e-42 0.526736 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 5.97e-42 0.26844 3e-12 breast cancer 11_803017 rs6597981 ENSG00000177600.8 RPLP2 -6737 9.05e-08 0.0947191 1e-12 breast cancer 11_803017 rs6597981 ENSG00000255284.1 GATD1-DT 25439 3.81e-42 0.526736 1e-12 breast cancer 11_803017 rs6597981 ENSG00000177595.17 PIDD1 -6629 5.97e-42 0.26844 1e-12 breast cancer 12_111162330 rs11065822 ENSG00000111275.12 ALDH2 -604557 0.000170231 0.126392 6e-09 breast cancer 12_111446804 rs3184504 ENSG00000111275.12 ALDH2 -320083 4.47e-09 -0.193577 2e-06 breast cancer 12_111446804 rs3184504 ENSG00000111275.12 ALDH2 -320083 4.47e-09 -0.193577 1e-06 breast cancer 12_111621753 rs11065979 ENSG00000111275.12 ALDH2 -145134 5.24e-13 0.239564 5e-06 breast cancer 12_111621753 rs11065979 ENSG00000234608.7 MAPKAPK5-AS1 -221149 3.17e-05 -0.123711 5e-06 breast cancer 12_120394343 rs206966 ENSG00000135097.6 MSI1 25163 2.95e-06 -0.189503 5e-08 breast cancer 12_120394343 rs206966 ENSG00000135097.6 MSI1 25163 2.95e-06 -0.189503 4e-08 breast cancer 12_120997672 rs2464195 ENSG00000157895.11 C12orf43 -18830 3.85e-08 -0.204308 3e-08 breast cancer 12_14257551 rs17221259 ENSG00000139055.6 ERP27 -681531 0.000153293 -0.258473 7e-06 breast cancer 12_14262448 rs150460514 ENSG00000139055.6 ERP27 -676634 4.61e-05 -0.2759 3e-08 breast cancer 12_24884534 rs10842422 ENSG00000060982.14 BCAT1 -64925 9.42e-08 0.178526 3e-06 breast cancer 12_49251457 rs11168936 ENSG00000167553.15 TUBA1C 42911 7.68e-05 -0.086659 9e-07 breast cancer 12_52918828 rs73110464 ENSG00000185640.5 KRT79 84533 0.000106886 0.173453 2e-15 breast cancer 14_36658205 rs12885612 ENSG00000198807.12 PAX9 637 1.12e-09 0.369178 8e-09 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 1e-25 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 5e-10 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 2e-09 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 4e-21 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 2e-13 breast cancer 14_36663564 rs2236007 ENSG00000198807.12 PAX9 5996 1.96e-09 0.360021 9e-13 breast cancer 14_36667340 rs7149262 ENSG00000198807.12 PAX9 9772 1.16e-09 0.36889 2e-21 breast cancer 14_38968140 rs147032157 ENSG00000150527.16 MIA2 -297144 0.000227034 -0.198901 4e-06 breast cancer 14_67599772 rs7149859 ENSG00000100564.8 PIGH -515 3.35e-09 -0.182716 7e-07 breast cancer 14_68193711 rs2588809 ENSG00000139988.9 RDH12 491825 1.53e-05 -0.106229 1e-10 breast cancer 14_68193711 rs2588809 ENSG00000139988.9 RDH12 491825 1.53e-05 -0.106229 6e-14 breast cancer 14_68193711 rs2588809 ENSG00000139988.9 RDH12 491825 1.53e-05 -0.106229 1e-14 breast cancer 14_68193711 rs2588809 ENSG00000139988.9 RDH12 491825 1.53e-05 -0.106229 2e-08 breast cancer 14_68193711 rs2588809 ENSG00000139988.9 RDH12 491825 1.53e-05 -0.106229 4e-09 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 8e-13 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 4e-10 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 6e-11 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 2e-13 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 2e-10 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 2e-07 breast cancer 14_91374725 rs941764 ENSG00000015133.18 CCDC88C -43119 1.04e-05 0.171175 6e-08 breast cancer 15_49580388 rs8027730 ENSG00000166262.15 FAM227B -40543 3.49e-10 0.223603 3e-08 breast cancer 15_50402109 rs4774565 ENSG00000244879.6 GABPB1-AS1 46700 6.28e-21 -0.47109 2e-06 breast cancer 15_74300521 rs12904134 ENSG00000140497.16 SCAMP2 -572844 8.41e-05 0.0905975 8e-06 breast cancer 15_74843920 rs6938 ENSG00000178802.17 MPI -46085 3.46e-08 0.138373 9e-08 breast cancer 15_74843920 rs6938 ENSG00000178718.6 RPP25 -113298 2.07e-05 -0.119593 9e-08 breast cancer 15_74854991 rs1869959 ENSG00000140497.16 SCAMP2 -18374 0.00012704 0.0905508 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 5.07e-08 0.134232 5e-08 breast cancer 15_74854991 rs1869959 ENSG00000140497.16 SCAMP2 -18374 0.00012704 0.0905508 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 5.07e-08 0.134232 6e-08 breast cancer 15_74854991 rs1869959 ENSG00000140497.16 SCAMP2 -18374 0.00012704 0.0905508 4e-07 breast cancer 15_74854991 rs1869959 ENSG00000178802.17 MPI -35014 5.07e-08 0.134232 4e-07 breast cancer 15_75516399 rs8027365 ENSG00000140400.16 MAN2C1 148245 1.01e-74 0.59702 1e-07 breast cancer 15_75516399 rs8027365 ENSG00000169371.13 SNUPN -110070 1.54e-12 0.250112 1e-07 breast cancer 15_77977130 rs12906542 ENSG00000167202.11 TBC1D2B -100594 1.03e-09 -0.184843 7e-07 breast cancer 15_79777420 rs166870 ENSG00000136371.10 MTHFS -119959 5.19e-11 -0.298413 3e-07 breast cancer 15_90965985 rs77554484 ENSG00000166965.12 RCCD1 10189 1.85e-78 0.750257 1e-15 breast cancer 15_90965985 rs77554484 ENSG00000184508.10 HDDC3 33416 1.27e-07 -0.251561 1e-15 breast cancer 15_90965985 rs77554484 ENSG00000258725.1 PRC1-AS1 -6875 1.45e-18 -0.607955 1e-15 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 4e-14 -0.440148 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.78e-40 0.482403 2e-19 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 4e-14 -0.440148 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.78e-40 0.482403 4e-08 breast cancer 15_90968837 rs2290203 ENSG00000258725.1 PRC1-AS1 -4023 4e-14 -0.440148 8e-10 breast cancer 15_90968837 rs2290203 ENSG00000166965.12 RCCD1 13041 4.78e-40 0.482403 8e-10 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 1.29e-25 -0.30713 3e-10 breast cancer 16_56387075 rs2432539 ENSG00000125124.11 BBS2 -133208 1.29e-25 -0.30713 4e-08 breast cancer 16_56497273 rs2303282 ENSG00000125124.11 BBS2 -23010 1.01e-28 -0.327267 3e-07 breast cancer 16_56497273 rs2303282 ENSG00000102891.3 MT4 -67776 5.41e-05 0.219959 3e-07 breast cancer 16_71475893 rs8050871 ENSG00000140832.9 MARVELD3 -150268 2.29e-05 -0.145297 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000167377.17 ZNF23 12798 1.51e-16 -0.275939 3e-06 breast cancer 16_71475893 rs8050871 ENSG00000040199.18 PHLPP2 -248808 3.23e-05 -0.140918 3e-06 breast cancer 17_2195889 rs16952006 ENSG00000167720.12 SRR -107494 5.65e-06 -0.402568 3e-06 breast cancer 17_2195889 rs16952006 ENSG00000108963.17 DPH1 165779 2.39e-06 0.23736 3e-06 breast cancer 17_45394123 rs4763 ENSG00000120088.14 CRHR1 -390157 0.000216422 0.196853 2e-08 breast cancer 17_45394123 rs4763 ENSG00000228696.8 ARL17B -967674 2e-05 0.351763 2e-08 breast cancer 17_45394123 rs4763 ENSG00000262500.1 MAPK8IP1P1 -849483 1.73e-73 1.13524 2e-08 breast cancer 17_45394123 rs4763 ENSG00000120071.13 KANSL1 -831266 2.86e-12 0.32084 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214401.4 KANSL1-AS1 -799453 1.58e-64 1.16727 2e-08 breast cancer 17_45394123 rs4763 ENSG00000214425.7 LRRC37A4P -156212 2.34e-86 -1.14385 2e-08 breast cancer 17_45394123 rs4763 ENSG00000204650.14 LINC02210 -226205 2.1e-91 1.11255 2e-08 breast cancer 17_45394123 rs4763 ENSG00000176681.14 LRRC37A -898610 1.4e-21 0.65176 2e-08 breast cancer 17_45394123 rs4763 ENSG00000263503.1 MAPK8IP1P2 -208217 1.76e-68 1.1417 2e-08 breast cancer 17_45394123 rs4763 ENSG00000264070.1 DND1P1 -191748 4.18e-52 1.10996 2e-08 breast cancer 17_45394123 rs4763 ENSG00000186868.15 MAPT -500259 2.59e-08 0.299043 2e-08 breast cancer 17_45394123 rs4763 ENSG00000159314.11 ARHGAP27 -40298 7.38e-41 0.45413 2e-08 breast cancer 17_45941122 rs62061734 ENSG00000186868.15 MAPT 46740 8.14e-09 0.281971 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000262500.1 MAPK8IP1P1 -302484 4.07e-97 1.13281 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000176681.14 LRRC37A -351611 4.63e-32 0.715249 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000263503.1 MAPK8IP1P2 338782 2.66e-95 1.16132 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000204650.14 LINC02210 320794 4e-150 1.15645 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214425.7 LRRC37A4P 390787 9.33e-123 -1.15444 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000238083.7 LRRC37A2 -570389 1.63e-61 0.888661 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000214401.4 KANSL1-AS1 -252454 1.23e-103 1.2437 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000159314.11 ARHGAP27 506701 6.32e-33 0.376797 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000120071.13 KANSL1 -284267 9.53e-14 0.310705 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000228696.8 ARL17B -420675 3.36e-05 0.312034 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000264070.1 DND1P1 355251 3.97e-82 1.19401 8e-12 breast cancer 17_45941122 rs62061734 ENSG00000185829.17 ARL17A -638560 7.99e-11 0.435249 8e-12 breast cancer 17_46751565 rs199533 ENSG00000073969.18 NSF 160896 0.000252288 -0.140058 5e-08 breast cancer 17_46751565 rs199533 ENSG00000228696.8 ARL17B 389768 6.8e-07 0.372778 5e-08 breast cancer 17_46751565 rs199533 ENSG00000238083.7 LRRC37A2 240054 3.45e-57 0.866023 5e-08 breast cancer 17_46751565 rs199533 ENSG00000120071.13 KANSL1 526176 3.72e-15 0.327539 5e-08 breast cancer 17_46751565 rs199533 ENSG00000176681.14 LRRC37A 458832 2.09e-30 0.699546 5e-08 breast cancer 17_46751565 rs199533 ENSG00000186868.15 MAPT 857183 2.02e-08 0.275121 5e-08 breast cancer 17_46751565 rs199533 ENSG00000214401.4 KANSL1-AS1 557989 5.13e-116 1.28561 5e-08 breast cancer 17_46751565 rs199533 ENSG00000185829.17 ARL17A 171883 1.96e-10 0.4273 5e-08 breast cancer 17_46751565 rs199533 ENSG00000263142.5 LRRC37A17P -265628 2.98e-05 -0.223186 5e-08 breast cancer 17_46751565 rs199533 ENSG00000262500.1 MAPK8IP1P1 507959 3.1e-111 1.18007 5e-08 breast cancer 17_46788237 rs199498 ENSG00000238083.7 LRRC37A2 276726 7.39e-36 0.683266 2e-08 breast cancer 17_46788237 rs199498 ENSG00000185829.17 ARL17A 208555 1.71e-06 0.31021 2e-08 breast cancer 17_46788237 rs199498 ENSG00000214401.4 KANSL1-AS1 594661 2.31e-69 1.04637 2e-08 breast cancer 17_46788237 rs199498 ENSG00000186868.15 MAPT 893855 3.38e-09 0.276741 2e-08 breast cancer 17_46788237 rs199498 ENSG00000228696.8 ARL17B 426440 0.000118607 0.27776 2e-08 breast cancer 17_46788237 rs199498 ENSG00000262500.1 MAPK8IP1P1 544631 1.95e-72 0.98646 2e-08 breast cancer 17_46788237 rs199498 ENSG00000176681.14 LRRC37A 495504 2.02e-22 0.579845 2e-08 breast cancer 17_46788237 rs199498 ENSG00000120071.13 KANSL1 562848 1.69e-09 0.243362 2e-08 breast cancer 17_50196930 rs2075555 ENSG00000108823.15 SGCA 30945 1.87e-06 -0.267925 8e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.07e-09 -0.235309 5e-12 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.07e-09 -0.235309 2e-13 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.07e-09 -0.235309 1e-08 breast cancer 17_54979110 rs6504950 ENSG00000166263.13 STXBP4 10324 1.07e-09 -0.235309 8e-09 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 1.16e-08 -0.213699 6e-29 breast cancer 17_55132413 rs2787486 ENSG00000166263.13 STXBP4 163627 1.16e-08 -0.213699 2e-34 breast cancer 17_55135212 rs2628317 ENSG00000141198.14 TOM1L1 235825 5.75e-06 -0.128498 4e-16 breast cancer 17_55135212 rs2628317 ENSG00000166263.13 STXBP4 166426 3.01e-09 -0.240847 4e-16 breast cancer 17_59334310 rs72831252 ENSG00000175155.8 YPEL2 2621 0.000365552 -0.232575 2e-06 breast cancer 17_7668434 rs78378222 ENSG00000141510.16 TP53 -9000 2.05e-10 -0.581091 1e-08 breast cancer 17_7668434 rs78378222 ENSG00000141510.16 TP53 -9000 2.05e-10 -0.581091 2e-09 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.43e-13 -0.342396 5e-07 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.43e-13 -0.342396 1e-09 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.43e-13 -0.342396 4e-10 breast cancer 17_79807926 rs745570 ENSG00000141570.10 CBX8 6243 1.43e-13 -0.342396 6e-06 breast cancer 17_81211408 rs9913021 ENSG00000141577.13 CEP131 -11591 3.87e-07 -0.156361 2e-06 breast cancer 17_82597601 rs62079673 ENSG00000141580.15 WDR45B -50952 3.39e-20 0.288961 1e-06 breast cancer 17_82946434 rs898097 ENSG00000141560.14 FN3KRP 229751 1.13e-31 -0.609422 2e-06 breast cancer 18_22897971 rs12962334 ENSG00000265939.1 UBE2CP2 -3024 9.94e-06 0.25707 4e-08 breast cancer 18_22897971 rs12962334 ENSG00000265939.1 UBE2CP2 -3024 9.94e-06 0.25707 4e-09 breast cancer 18_22897971 rs12962334 ENSG00000265939.1 UBE2CP2 -3024 9.94e-06 0.25707 1e-06 breast cancer 18_23047728 rs9675999 ENSG00000265939.1 UBE2CP2 146733 3.61e-06 0.27351 7e-07 breast cancer 19_11313027 rs322144 ENSG00000105514.7 RAB3D -26641 1.75e-05 0.0658044 7e-09 breast cancer 19_12846836 rs117758012 ENSG00000095066.11 HOOK2 -25904 3.6e-05 0.239638 5e-07 breast cancer 19_13843757 rs2594714 ENSG00000132003.9 ZSWIM4 48297 1.2e-05 0.147086 1e-08 breast cancer 19_13843757 rs2594714 ENSG00000132003.9 ZSWIM4 48297 1.2e-05 0.147086 4e-10 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 7e-21 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 7e-21 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 7e-21 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 7e-21 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 2e-06 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 2e-06 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 2e-06 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 2e-06 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 4e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 4e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 4e-13 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 4e-13 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 2e-09 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 2e-09 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 2e-09 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 2e-09 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 1e-12 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 1e-12 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 1e-12 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 1e-12 breast cancer 19_17278895 rs8170 ENSG00000130312.6 MRPL34 -13937 1.5e-08 -0.223044 9e-13 breast cancer 19_17278895 rs8170 ENSG00000127220.5 ABHD8 -31341 2.5e-07 0.16283 9e-13 breast cancer 19_17278895 rs8170 ENSG00000160117.14 ANKLE1 -2750 8.44e-19 0.403958 9e-13 breast cancer 19_17278895 rs8170 ENSG00000130300.8 PLVAP -98455 1.86e-07 -0.181006 9e-13 breast cancer 19_17278895 rs8170 ENSG00000105393.15 BABAM1 11545 6.11e-08 -0.163787 9e-13 breast cancer 19_17279482 rs4808075 ENSG00000160117.14 ANKLE1 -2163 2.04e-08 0.222494 4e-07 breast cancer 19_17279482 rs4808075 ENSG00000160117.14 ANKLE1 -2163 2.04e-08 0.222494 2e-09 breast cancer 19_17282085 rs8100241 ENSG00000130312.6 MRPL34 -10747 6.37e-07 0.15528 4e-08 breast cancer 19_17283116 rs56069439 ENSG00000160117.14 ANKLE1 1471 3.37e-08 0.219324 8e-19 breast cancer 19_17283116 rs56069439 ENSG00000160117.14 ANKLE1 1471 3.37e-08 0.219324 9e-09 breast cancer 19_17283116 rs56069439 ENSG00000160117.14 ANKLE1 1471 3.37e-08 0.219324 1e-32 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 9e-07 0.15297 2e-08 breast cancer 19_17283315 rs2363956 ENSG00000130312.6 MRPL34 -9517 9e-07 0.15297 2e-06 breast cancer 19_17290595 rs67397200 ENSG00000160117.14 ANKLE1 8950 9.18e-08 0.212139 3e-17 breast cancer 19_17290595 rs67397200 ENSG00000160117.14 ANKLE1 8950 9.18e-08 0.212139 3e-37 breast cancer 19_17290595 rs67397200 ENSG00000160117.14 ANKLE1 8950 9.18e-08 0.212139 2e-08 breast cancer 19_18422832 rs7258465 ENSG00000175489.9 LRRC25 25215 2.65e-05 -0.135349 3e-28 breast cancer 19_18422832 rs7258465 ENSG00000130511.15 SSBP4 3968 6.42e-37 -0.328472 3e-28 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 4e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 5e-28 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 2e-31 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 6e-06 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 5e-15 breast cancer 19_18460331 rs4808801 ENSG00000175489.9 LRRC25 62714 3.83e-05 -0.133751 6e-14 breast cancer 19_18460331 rs4808801 ENSG00000130511.15 SSBP4 41467 1.33e-33 -0.317644 6e-14 breast cancer 19_18522945 rs172032 ENSG00000130511.15 SSBP4 104081 1.21e-20 -0.243205 1e-16 breast cancer 19_19417997 rs1469713 ENSG00000064547.13 LPAR2 -210933 1.07e-06 -0.154272 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000250067.11 YJEFN3 -111367 1.9e-11 -0.187653 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000213996.12 TM6SF2 144606 1.67e-06 0.221522 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000187664.8 HAPLN4 155201 1.11e-07 0.290336 1e-10 breast cancer 19_19417997 rs1469713 ENSG00000167491.17 GATAD2A 32171 4.26e-06 0.0785082 1e-10 breast cancer 19_19434887 rs2965183 ENSG00000167491.17 GATAD2A 49061 5.51e-06 0.0779116 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 1.41e-11 -0.189538 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000187664.8 HAPLN4 172091 1.06e-07 0.291897 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 2.39e-06 0.219119 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000064547.13 LPAR2 -194043 1.24e-06 -0.153976 1e-11 breast cancer 19_19434887 rs2965183 ENSG00000167491.17 GATAD2A 49061 5.51e-06 0.0779116 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000250067.11 YJEFN3 -94477 1.41e-11 -0.189538 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000187664.8 HAPLN4 172091 1.06e-07 0.291897 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000213996.12 TM6SF2 161496 2.39e-06 0.219119 6e-12 breast cancer 19_19434887 rs2965183 ENSG00000064547.13 LPAR2 -194043 1.24e-06 -0.153976 6e-12 breast cancer 19_19535463 rs2304098 ENSG00000250067.11 YJEFN3 6099 5.08e-11 -0.184712 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000167491.17 GATAD2A 149637 1.69e-06 0.0820671 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000187664.8 HAPLN4 272667 1.76e-07 0.287254 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000064547.13 LPAR2 -93467 3.09e-06 -0.148441 2e-11 breast cancer 19_19535463 rs2304098 ENSG00000213996.12 TM6SF2 262072 3.89e-06 0.214816 2e-11 breast cancer 19_2226677 rs3815308 ENSG00000104899.7 AMH -22632 1.17e-06 0.246411 7e-06 breast cancer 19_29786822 rs113701136 ENSG00000105173.13 CCNE1 -25076 3.69e-37 0.497022 7e-09 breast cancer 19_29786822 rs113701136 ENSG00000105176.17 URI1 -136822 0.000133884 0.0832603 7e-09 breast cancer 19_29786822 rs113701136 ENSG00000105173.13 CCNE1 -25076 3.69e-37 0.497022 2e-07 breast cancer 19_29786822 rs113701136 ENSG00000105176.17 URI1 -136822 0.000133884 0.0832603 2e-07 breast cancer 19_43779080 rs1685191 ENSG00000176222.8 ZNF404 -104971 2.58e-06 -0.150213 4e-20 breast cancer 19_43779080 rs1685191 ENSG00000159871.14 LYPD5 -48126 1.95e-07 0.116348 4e-20 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 5e-08 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 2e-14 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 9e-07 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 8e-09 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 1e-16 breast cancer 19_43782361 rs3760982 ENSG00000159871.14 LYPD5 -44845 1.3e-10 0.144284 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000204920.10 ZNF155 -185501 1.19e-05 -0.22839 2e-10 breast cancer 19_43782361 rs3760982 ENSG00000176222.8 ZNF404 -101690 2.35e-08 -0.179636 2e-10 breast cancer 19_43919418 rs375066 ENSG00000204920.10 ZNF155 -48444 3.2e-07 -0.27713 2e-14 breast cancer 19_43919418 rs375066 ENSG00000159871.14 LYPD5 92212 1.02e-10 0.151417 2e-14 breast cancer 19_43919418 rs375066 ENSG00000176222.8 ZNF404 35367 7.28e-17 -0.274228 2e-14 breast cancer 19_51942133 rs8113308 ENSG00000256683.6 ZNF350 -44723 7.83e-05 -0.172313 6e-07 breast cancer 19_51942133 rs8113308 ENSG00000256087.6 ZNF432 -106873 3.5e-07 0.21568 6e-07 breast cancer 19_51942133 rs8113308 ENSG00000197608.11 ZNF841 -153632 5.5e-06 0.168358 6e-07 breast cancer 19_55035675 rs112822051 ENSG00000088053.11 GP6 -2589 5.09e-08 0.572539 3e-06 breast cancer 2_111138666 rs17041869 ENSG00000153094.22 BCL2L11 19288 1.41e-06 -0.254097 2e-09 breast cancer 2_171513371 rs11680449 ENSG00000071967.11 CYBRD1 -8876 0.000107596 -0.113156 4e-09 breast cancer 2_172108243 rs2016394 ENSG00000115844.10 DLX2 5343 3.96e-07 0.216505 2e-06 breast cancer 2_172108243 rs2016394 ENSG00000144355.14 DLX1 23503 2.96e-08 0.237621 2e-06 breast cancer 2_172108243 rs2016394 ENSG00000115844.10 DLX2 5343 3.96e-07 0.216505 3e-12 breast cancer 2_172108243 rs2016394 ENSG00000144355.14 DLX1 23503 2.96e-08 0.237621 3e-12 breast cancer 2_172108243 rs2016394 ENSG00000115844.10 DLX2 5343 3.96e-07 0.216505 8e-06 breast cancer 2_172108243 rs2016394 ENSG00000144355.14 DLX1 23503 2.96e-08 0.237621 8e-06 breast cancer 2_172108243 rs2016394 ENSG00000115844.10 DLX2 5343 3.96e-07 0.216505 6e-12 breast cancer 2_172108243 rs2016394 ENSG00000144355.14 DLX1 23503 2.96e-08 0.237621 6e-12 breast cancer 2_172108243 rs2016394 ENSG00000115844.10 DLX2 5343 3.96e-07 0.216505 1e-08 breast cancer 2_172108243 rs2016394 ENSG00000144355.14 DLX1 23503 2.96e-08 0.237621 1e-08 breast cancer 2_173348166 rs1550623 ENSG00000144354.13 CDCA7 -6654 2.85e-10 0.295549 6e-10 breast cancer 2_173348166 rs1550623 ENSG00000144354.13 CDCA7 -6654 2.85e-10 0.295549 3e-08 breast cancer 2_173348166 rs1550623 ENSG00000144354.13 CDCA7 -6654 2.85e-10 0.295549 1e-06 breast cancer 2_173348166 rs1550623 ENSG00000144354.13 CDCA7 -6654 2.85e-10 0.295549 5e-10 breast cancer 2_201003582 rs112257290 ENSG00000064012.21 CASP8 -229861 2.1e-05 -0.452809 2e-07 breast cancer 2_201258707 rs3769821 ENSG00000003400.14 CASP10 75826 1.39e-07 -0.198091 4e-18 breast cancer 2_201258707 rs3769821 ENSG00000252759.1 Y_RNA 395460 0.000237993 0.161278 4e-18 breast cancer 2_201258707 rs3769821 ENSG00000155749.12 FLACC1 -98691 2.07e-12 -0.376238 4e-18 breast cancer 2_201258707 rs3769821 ENSG00000064012.21 CASP8 25264 3.25e-50 0.601853 4e-18 breast cancer 2_201279205 rs10931936 ENSG00000155749.12 FLACC1 -78193 5.14e-12 -0.394883 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000003400.14 CASP10 96324 3.12e-06 -0.187938 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000240344.8 PPIL3 389902 0.000254607 -0.198402 6e-06 breast cancer 2_201279205 rs10931936 ENSG00000064012.21 CASP8 45762 1.85e-43 0.605927 6e-06 breast cancer 2_201288355 rs1035142 ENSG00000064012.21 CASP8 54912 6.65e-76 0.675214 3e-09 breast cancer 2_201288355 rs1035142 ENSG00000155749.12 FLACC1 -69043 1.02e-09 -0.316464 3e-09 breast cancer 2_201288502 rs700635 ENSG00000155749.12 FLACC1 -68896 2.44e-12 -0.400472 5e-16 breast cancer 2_201288502 rs700635 ENSG00000003400.14 CASP10 105621 3.1e-06 -0.187941 5e-16 breast cancer 2_201288502 rs700635 ENSG00000064012.21 CASP8 55059 8.58e-44 0.60769 5e-16 breast cancer 2_201288502 rs700635 ENSG00000240344.8 PPIL3 399199 0.000171921 -0.203656 5e-16 breast cancer 2_201316524 rs1830298 ENSG00000003400.14 CASP10 133643 3.1e-06 -0.187941 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 8.58e-44 0.60769 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 0.000171921 -0.203656 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.44e-12 -0.400472 7e-07 breast cancer 2_201316524 rs1830298 ENSG00000003400.14 CASP10 133643 3.1e-06 -0.187941 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 8.58e-44 0.60769 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 0.000171921 -0.203656 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.44e-12 -0.400472 6e-24 breast cancer 2_201316524 rs1830298 ENSG00000003400.14 CASP10 133643 3.1e-06 -0.187941 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 8.58e-44 0.60769 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 0.000171921 -0.203656 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.44e-12 -0.400472 9e-14 breast cancer 2_201316524 rs1830298 ENSG00000003400.14 CASP10 133643 3.1e-06 -0.187941 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000064012.21 CASP8 83081 8.58e-44 0.60769 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000240344.8 PPIL3 427221 0.000171921 -0.203656 2e-16 breast cancer 2_201316524 rs1830298 ENSG00000155749.12 FLACC1 -40874 2.44e-12 -0.400472 2e-16 breast cancer 2_201384985 rs2714486 ENSG00000155749.12 FLACC1 27587 1.54e-05 0.305456 7e-10 breast cancer 2_201384985 rs2714486 ENSG00000064012.21 CASP8 151542 1.64e-24 -0.569918 7e-10 breast cancer 2_201384985 rs2714486 ENSG00000003400.14 CASP10 202104 4.58e-06 0.224588 7e-10 breast cancer 2_201502866 rs77688320 ENSG00000064012.21 CASP8 269423 6.07e-19 -0.551114 3e-09 breast cancer 2_201502866 rs77688320 ENSG00000155749.12 FLACC1 145468 7.07e-05 0.308314 3e-09 breast cancer 2_201502866 rs77688320 ENSG00000003400.14 CASP10 319985 9.43e-05 0.210446 3e-09 breast cancer 2_217427435 rs11693806 ENSG00000231672.6 DIRC3 -329158 1.33e-06 -0.255364 3e-26 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 1e-17 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 2e-08 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 7e-06 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 2e-25 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 2e-31 breast cancer 2_217431785 rs16857609 ENSG00000231672.6 DIRC3 -324808 1.22e-09 0.327116 1e-15 breast cancer 2_217432009 rs16857611 ENSG00000231672.6 DIRC3 -324584 3.18e-09 0.320539 8e-07 breast cancer 2_24906604 rs6725517 ENSG00000138031.14 ADCY3 -13235 2.01e-06 -0.107313 5e-11 breast cancer 2_24906604 rs6725517 ENSG00000138031.14 ADCY3 -13235 2.01e-06 -0.107313 3e-12 breast cancer 2_25068670 rs1971136 ENSG00000224165.5 DNAJC27-AS1 97280 7.34e-08 0.23489 5e-09 breast cancer 2_25068670 rs1971136 ENSG00000138031.14 ADCY3 148831 8.11e-10 0.134547 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 2.7e-07 -0.134703 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 4.27e-10 0.277804 5e-09 breast cancer 2_28896719 rs67073037 ENSG00000213639.9 PPP1CB 145079 2.7e-07 -0.134703 3e-06 breast cancer 2_28896719 rs67073037 ENSG00000171103.10 TRMT61B 26418 4.27e-10 0.277804 3e-06 breast cancer 2_28897867 rs4577244 ENSG00000171103.10 TRMT61B 27566 1.05e-09 0.270201 2e-09 breast cancer 2_28897867 rs4577244 ENSG00000213639.9 PPP1CB 146227 1.29e-07 -0.137415 2e-09 breast cancer 2_9995553 rs113577745 ENSG00000134317.17 GRHL1 43860 6.24e-12 0.2903 4e-10 breast cancer 2_9995553 rs113577745 ENSG00000134317.17 GRHL1 43860 6.24e-12 0.2903 5e-10 breast cancer 20_33298440 rs4911315 ENSG00000101440.9 ASIP -896129 3.38e-13 -0.447389 8e-07 breast cancer 20_34000289 rs2284378 ENSG00000101460.12 MAP1LC3A -546565 0.00032121 0.0888487 1e-08 breast cancer 20_34000289 rs2284378 ENSG00000101440.9 ASIP -194280 0.000422888 -0.133716 1e-08 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 0.000313316 0.0889533 6e-06 breast cancer 20_34002002 rs2300206 ENSG00000101460.12 MAP1LC3A -544852 0.000313316 0.0889533 2e-08 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 8.32e-05 0.0928099 3e-06 breast cancer 20_34131991 rs11907546 ENSG00000101460.12 MAP1LC3A -414863 8.32e-05 0.0928099 3e-09 breast cancer 20_39051206 rs742276 ENSG00000101447.14 FAM83D 124894 1.31e-08 -0.248805 9e-06 breast cancer 20_64247978 rs6062356 ENSG00000203880.11 PCMTD2 -7717 6.32e-06 0.145899 3e-06 breast cancer 21_15196204 rs7275695 ENSG00000155313.15 USP25 -533821 1.64e-05 0.104021 4e-06 breast cancer 21_15202135 rs2403907 ENSG00000155313.15 USP25 -527890 1.01e-05 0.10771 2e-32 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 3.85e-06 -0.521693 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.93e-19 -0.841206 6e-09 breast cancer 21_46360308 rs9808759 ENSG00000160284.14 SPATC1L 175832 3.85e-06 -0.521693 4e-07 breast cancer 21_46360308 rs9808759 ENSG00000182362.13 YBEY 73971 1.93e-19 -0.841206 4e-07 breast cancer 22_38172826 rs738321 ENSG00000198792.12 TMEM184B -100208 7.36e-06 -0.12243 7e-14 breast cancer 22_38172826 rs738321 ENSG00000128298.16 BAIAP2L2 62156 1.19e-06 -0.213173 7e-14 breast cancer 22_38172826 rs738321 ENSG00000198792.12 TMEM184B -100208 7.36e-06 -0.12243 1e-13 breast cancer 22_38172826 rs738321 ENSG00000128298.16 BAIAP2L2 62156 1.19e-06 -0.213173 1e-13 breast cancer 22_38174306 rs4820318 ENSG00000128298.16 BAIAP2L2 63636 1.33e-06 -0.212529 1e-13 breast cancer 22_38174306 rs4820318 ENSG00000198792.12 TMEM184B -98728 6.51e-06 -0.123319 1e-13 breast cancer 22_38798063 rs9619765 ENSG00000184949.15 FAM227A 141434 5.35e-07 -0.618245 1e-06 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.43e-38 -0.844112 4e-06 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.43e-38 -0.844112 3e-17 breast cancer 22_38962032 rs12628403 ENSG00000179750.15 APOBEC3B -20315 1.43e-38 -0.844112 9e-14 breast cancer 22_43072659 rs28599928 ENSG00000242247.10 ARFGAP3 214553 9.25e-05 0.164609 2e-06 breast cancer 22_43072659 rs28599928 ENSG00000100266.18 PACSIN2 57514 3.83e-06 0.233412 2e-06 breast cancer 3_141547651 rs6776003 ENSG00000177311.11 ZBTB38 223438 1.38e-05 -0.0981221 3e-10 breast cancer 3_14520620 rs1106333 ENSG00000144596.12 GRIP2 -35455 9.17e-13 0.568025 6e-08 breast cancer 3_150750021 rs6788895 ENSG00000181788.3 SIAH2 -13456 6.01e-13 0.323461 9e-08 breast cancer 3_150750021 rs6788895 ENSG00000181788.3 SIAH2 -13456 6.01e-13 0.323461 2e-06 breast cancer 3_150754603 rs2120596 ENSG00000181788.3 SIAH2 -8874 7.5e-07 0.286541 8e-14 breast cancer 3_150755819 rs60538652 ENSG00000181788.3 SIAH2 -7658 5.01e-07 0.271068 6e-07 breast cancer 3_150762029 rs1838337 ENSG00000181788.3 SIAH2 -1448 8.58e-05 0.201928 1e-08 breast cancer 3_156645453 rs2136690 ENSG00000240875.5 LINC00886 -171609 1.63e-06 -0.231183 4e-06 breast cancer 3_156645453 rs2136690 ENSG00000197980.12 LEKR1 -180028 4.38e-05 0.217945 4e-06 breast cancer 3_156927968 rs7637701 ENSG00000240875.5 LINC00886 110906 3.96e-20 -0.417648 1e-06 breast cancer 3_190056667 rs9882792 ENSG00000090530.9 P3H2 -65770 7.76e-06 -0.149096 2e-06 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 4e-05 -0.155868 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 3.51e-05 0.331455 8e-07 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 4e-05 -0.155868 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 3.51e-05 0.331455 2e-08 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 4e-05 -0.155868 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 3.51e-05 0.331455 7e-16 breast cancer 3_46825376 rs6796502 ENSG00000178038.16 ALS2CL 131672 4e-05 -0.155868 6e-15 breast cancer 3_46825376 rs6796502 ENSG00000188086.13 PRSS45P 80621 3.51e-05 0.331455 6e-15 breast cancer 3_46846708 rs56387622 ENSG00000188086.13 PRSS45P 101953 2.15e-05 0.324031 5e-19 breast cancer 3_49129027 rs61729152 ENSG00000229759.1 MRPS18AP1 872441 0.00030136 0.805599 6e-06 breast cancer 4_103450498 rs10016947 ENSG00000164039.14 BDH2 350615 6.89e-06 0.31821 9e-06 breast cancer 4_38814717 rs6815814 ENSG00000174123.10 TLR10 31727 6.6e-05 0.247258 1e-11 breast cancer 4_38814717 rs6815814 ENSG00000174130.12 TLR6 -29074 1.04e-08 -0.263575 1e-11 breast cancer 4_38814717 rs6815814 ENSG00000174123.10 TLR10 31727 6.6e-05 0.247258 6e-13 breast cancer 4_38814717 rs6815814 ENSG00000174130.12 TLR6 -29074 1.04e-08 -0.263575 6e-13 breast cancer 4_57013626 rs4865169 ENSG00000084092.6 NOA1 34987 4.23e-06 0.107787 7e-06 breast cancer 4_88322666 rs10022462 ENSG00000246375.2 PPM1K-DT 37724 3.05e-05 0.16861 2e-09 breast cancer 4_88322666 rs10022462 ENSG00000246375.2 PPM1K-DT 37724 3.05e-05 0.16861 3e-10 breast cancer 5_10467590 rs1092913 ENSG00000145495.15 MARCHF6 113887 4.94e-06 -0.137048 2e-06 breast cancer 5_128098106 rs1112956 ENSG00000245937.7 SLC12A2-DT 14934 1.94e-36 0.518845 9e-06 breast cancer 5_128227188 rs36715 ENSG00000245937.7 SLC12A2-DT 144016 3.68e-17 0.336359 4e-06 breast cancer 5_1296644 rs2736109 ENSG00000049656.13 CLPTM1L -48455 5.14e-05 0.0830235 2e-08 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 2.51e-13 -0.199279 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 2.81e-22 -0.318963 3e-08 breast cancer 5_132304843 rs6860806 ENSG00000131435.12 PDLIM4 47172 2.51e-13 -0.199279 8e-08 breast cancer 5_132304843 rs6860806 ENSG00000197375.12 SLC22A5 -64909 2.81e-22 -0.318963 8e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 0.000263641 -0.141992 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 5.25e-09 0.166248 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 1.23e-28 0.37152 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 3.53e-06 -0.161794 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 5.35e-05 -0.147258 1e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 0.000263641 -0.141992 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 5.25e-09 0.166248 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 1.23e-28 0.37152 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 3.53e-06 -0.161794 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 5.35e-05 -0.147258 9e-08 breast cancer 5_132466255 rs2522057 ENSG00000233006.6 MIR3936HG 96607 0.000263641 -0.141992 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000131435.12 PDLIM4 208584 5.25e-09 0.166248 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197375.12 SLC22A5 96503 1.23e-28 0.37152 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000197536.11 IRF1-AS1 55619 3.53e-06 -0.161794 3e-07 breast cancer 5_132466255 rs2522057 ENSG00000125347.13 IRF1 -24543 5.35e-05 -0.147258 3e-07 breast cancer 5_132497907 rs736801 ENSG00000125347.13 IRF1 7109 5.22e-05 0.152568 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197536.11 IRF1-AS1 87271 1.9e-05 0.154659 8e-08 breast cancer 5_132497907 rs736801 ENSG00000131435.12 PDLIM4 240236 6.14e-06 -0.134204 8e-08 breast cancer 5_132497907 rs736801 ENSG00000197375.12 SLC22A5 128155 9.77e-21 -0.329656 8e-08 breast cancer 5_1453229 rs2617583 ENSG00000142319.17 SLC6A3 7799 9.02e-12 -0.347716 9e-07 breast cancer 5_154976135 rs6890610 ENSG00000082516.8 GEMIN5 37926 1.23e-06 -0.16892 6e-06 breast cancer 5_154976135 rs6890610 ENSG00000155508.13 CNOT8 118582 1.79e-14 -0.228895 6e-06 breast cancer 5_50345811 rs72749841 ENSG00000170571.11 EMB -97437 0.000142795 0.147664 7e-10 breast cancer 5_50793817 rs26067 ENSG00000151883.17 PARP8 127918 2.34e-08 0.178031 2e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 3e-36 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 1e-39 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 7e-20 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 3e-27 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 1e-08 breast cancer 5_56736057 rs889312 ENSG00000155542.11 SETD9 -173203 3.76e-12 0.396629 5e-09 breast cancer 5_56737113 rs1862626 ENSG00000155542.11 SETD9 -172147 4.73e-12 0.393781 4e-12 breast cancer 5_56926293 rs11957276 ENSG00000155542.11 SETD9 17033 2.2e-09 0.364181 5e-11 breast cancer 5_56977866 rs10036895 ENSG00000155542.11 SETD9 68606 7.74e-32 0.586632 2e-12 breast cancer 5_81972251 rs111549985 ENSG00000205464.11 ATP6AP1L -307211 2.89e-72 0.911359 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000186468.12 RPS23 -306326 7.74e-51 -0.441055 6e-12 breast cancer 5_81972251 rs111549985 ENSG00000152348.15 ATG10 226 4.73e-84 0.916167 6e-12 breast cancer 5_82161539 rs2407064 ENSG00000205464.11 ATP6AP1L -117923 3.4e-73 -0.897549 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000186468.12 RPS23 -117038 1.86e-52 0.437853 3e-08 breast cancer 5_82161539 rs2407064 ENSG00000152348.15 ATG10 189514 1.48e-75 -0.866843 3e-08 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.46e-72 -0.861811 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.26e-76 -0.918704 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.93e-54 0.449161 4e-09 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.46e-72 -0.861811 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.26e-76 -0.918704 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.93e-54 0.449161 5e-11 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.46e-72 -0.861811 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.26e-76 -0.918704 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.93e-54 0.449161 1e-12 breast cancer 5_82242227 rs7707921 ENSG00000152348.15 ATG10 270202 5.46e-72 -0.861811 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000205464.11 ATP6AP1L -37235 7.26e-76 -0.918704 2e-12 breast cancer 5_82242227 rs7707921 ENSG00000186468.12 RPS23 -36350 1.93e-54 0.449161 2e-12 breast cancer 5_82340549 rs2407156 ENSG00000186468.12 RPS23 61972 1.28e-43 -0.394654 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000205464.11 ATP6AP1L 61087 5.55e-57 0.795549 2e-06 breast cancer 5_82340549 rs2407156 ENSG00000152348.15 ATG10 368524 2.51e-40 0.660542 2e-06 breast cancer 6_122394099 rs74392007 ENSG00000025156.12 -5447 1.12e-05 -0.222521 3e-07 breast cancer 6_122554525 rs76092474 ENSG00000025156.12 154979 1.49e-05 -0.219245 3e-06 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 2.82e-33 -0.630435 3e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 2.82e-33 -0.630435 4e-08 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 2.82e-33 -0.630435 2e-12 breast cancer 6_130027974 rs6569648 ENSG00000198945.7 L3MBTL3 14275 2.82e-33 -0.630435 8e-10 breast cancer 6_13713134 rs418053 ENSG00000124523.15 SIRT5 138605 6.11e-05 -0.114661 1e-13 breast cancer 6_13722291 rs204247 ENSG00000124523.15 SIRT5 147762 0.000153031 -0.107709 8e-09 breast cancer 6_13722291 rs204247 ENSG00000124523.15 SIRT5 147762 0.000153031 -0.107709 3e-07 breast cancer 6_13722291 rs204247 ENSG00000124523.15 SIRT5 147762 0.000153031 -0.107709 3e-14 breast cancer 6_13722291 rs204247 ENSG00000124523.15 SIRT5 147762 0.000153031 -0.107709 4e-10 breast cancer 6_13722291 rs204247 ENSG00000124523.15 SIRT5 147762 0.000153031 -0.107709 8e-13 breast cancer 6_151974478 rs9383951 ENSG00000120279.6 MYCT1 -723417 0.000146563 0.352913 2e-06 breast cancer 6_25710343 rs68006638 ENSG00000186470.13 BTN3A2 -654816 5.37e-26 -0.949423 2e-07 breast cancer 6_25710343 rs68006638 ENSG00000272462.2 LINC02980 -282319 5.5e-06 0.5044 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000186470.13 BTN3A2 -490964 3.17e-26 -0.955925 2e-07 breast cancer 6_25874195 rs13198474 ENSG00000272462.2 LINC02980 -118467 9.25e-06 0.493698 2e-07 breast cancer 6_26175638 rs17598658 ENSG00000186470.13 BTN3A2 -189521 9.1e-32 -0.953688 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000186470.13 BTN3A2 98187 1.4e-45 -1.09048 2e-09 breast cancer 6_26463346 rs13195401 ENSG00000112812.15 PRSS16 -784355 3.05e-09 0.382409 2e-09 breast cancer 6_26993501 rs34546498 ENSG00000184357.4 H1-5 -874028 3.14e-05 -0.351083 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000112812.15 PRSS16 -254200 9.83e-09 0.377114 9e-10 breast cancer 6_26993501 rs34546498 ENSG00000186470.13 BTN3A2 628342 5.08e-42 -1.07361 9e-10 breast cancer 6_27307055 rs56114371 ENSG00000197062.11 ZSCAN26 -959955 3.49e-11 -0.354322 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000186470.13 BTN3A2 941896 4.41e-41 -1.05674 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000219891.2 ZSCAN12P1 -784099 0.000719043 0.393618 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000184357.4 H1-5 -560474 1.88e-05 -0.358401 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000226314.7 ZKSCAN8P1 -854726 0.00019427 -0.360445 2e-09 breast cancer 6_27307055 rs56114371 ENSG00000112812.15 PRSS16 59354 7.09e-09 0.378213 2e-09 breast cancer 6_27457865 rs34196306 ENSG00000184357.4 H1-5 -409664 4.12e-05 -0.346725 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000235109.7 ZSCAN31 -898406 8.48e-05 0.297606 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000226314.7 ZKSCAN8P1 -703916 4.54e-05 -0.397229 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000112812.15 PRSS16 210164 8.72e-07 0.325783 1e-09 breast cancer 6_27457865 rs34196306 ENSG00000197062.11 ZSCAN26 -809145 9.42e-11 -0.349724 1e-09 breast cancer 6_27873148 rs45509595 ENSG00000197062.11 ZSCAN26 -393862 1.66e-12 -0.373055 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000226314.7 ZKSCAN8P1 -288633 3.74e-05 -0.394531 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000112812.15 PRSS16 625447 7.88e-07 0.321385 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000235109.7 ZSCAN31 -483123 2.38e-05 0.314014 5e-09 breast cancer 6_27873148 rs45509595 ENSG00000184357.4 H1-5 5619 0.000137822 -0.317124 5e-09 breast cancer 6_28106103 rs34662244 ENSG00000226314.7 ZKSCAN8P1 -55678 5.83e-05 -0.37908 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000204713.10 TRIM27 -817886 2.97e-09 -0.416026 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000197062.11 ZSCAN26 -160907 3.56e-12 -0.362189 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000235109.7 ZSCAN31 -250168 3.01e-06 0.341087 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000184357.4 H1-5 238574 1.35e-05 -0.355715 3e-09 breast cancer 6_28106103 rs34662244 ENSG00000112812.15 PRSS16 858402 6.05e-06 0.290683 3e-09 breast cancer 6_28364364 rs13214023 ENSG00000184357.4 H1-5 496835 4.04e-05 -0.341497 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000197062.11 ZSCAN26 97354 2.64e-12 -0.370255 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000235109.7 ZSCAN31 8093 2.54e-05 0.313342 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000204713.10 TRIM27 -559625 2.14e-09 -0.426523 1e-09 breast cancer 6_28364364 rs13214023 ENSG00000226314.7 ZKSCAN8P1 202583 5.82e-05 -0.385343 1e-09 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 8.03e-05 -0.100249 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 2.04e-09 0.208197 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 2.52e-40 -0.414015 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.22e-08 0.246653 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000137185.11 ZSCAN9 733557 5.68e-07 -0.185259 5e-08 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 8.03e-05 -0.100249 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 2.04e-09 0.208197 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 2.52e-40 -0.414015 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.22e-08 0.246653 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000137185.11 ZSCAN9 733557 5.68e-07 -0.185259 5e-07 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 8.03e-05 -0.100249 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 2.04e-09 0.208197 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 2.52e-40 -0.414015 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.22e-08 0.246653 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000137185.11 ZSCAN9 733557 5.68e-07 -0.185259 3e-07 breast cancer 6_28958443 rs9257408 ENSG00000197062.11 ZSCAN26 691433 8.03e-05 -0.100249 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000235109.7 ZSCAN31 602172 2.04e-09 0.208197 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000204713.10 TRIM27 34454 2.52e-40 -0.414015 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000187987.9 ZSCAN23 514941 2.22e-08 0.246653 7e-08 breast cancer 6_28958443 rs9257408 ENSG00000137185.11 ZSCAN9 733557 5.68e-07 -0.185259 7e-08 breast cancer 6_29280372 rs3130834 ENSG00000281831.1 HCP5B -593411 2.9e-10 0.713725 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204657.3 OR2H2 -307083 0.00016306 0.407845 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204622.11 HLA-J -725599 6.61e-08 -0.611359 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000235109.7 ZSCAN31 924101 6.2e-05 0.290704 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204713.10 TRIM27 356383 1.06e-09 -0.423273 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000214922.9 HLA-F-AS1 -468621 3.59e-05 0.338965 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000230795.3 HLA-K -646806 9.9e-10 -0.720406 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204655.11 MOG -376609 0.000506175 0.42058 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000239257.1 RPL23AP1 -446510 0.000340475 0.385041 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204616.10 TRIM31 -832734 5.8e-07 -0.433451 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000235821.1 IFITM4P -470776 2.63e-05 -0.436486 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204644.9 ZFP57 -400738 4.67e-16 0.98223 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000206503.12 HLA-A -660888 7.27e-08 -0.345311 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000176998.4 HCG4 -512064 0.000450095 -0.395951 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000204632.11 HLA-G -546595 1.35e-07 -0.608885 5e-09 breast cancer 6_29280372 rs3130834 ENSG00000231130.1 HLA-T -616282 0.000133628 -0.467341 5e-09 breast cancer 6_29388554 rs9257809 ENSG00000231130.1 HLA-T -508100 9.82e-06 -0.52688 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000230795.3 HLA-K -538624 2.97e-12 -0.798568 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000176998.4 HCG4 -403882 5.93e-05 -0.44163 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204713.10 TRIM27 464565 1.32e-09 -0.411131 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000206503.12 HLA-A -552706 2.82e-08 -0.347428 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000281831.1 HCP5B -485229 2.23e-10 0.7014 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000214922.9 HLA-F-AS1 -360439 5.72e-06 0.362752 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204657.3 OR2H2 -198901 6.76e-05 0.420593 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000227262.3 HCG4B -538419 0.000159512 -0.435749 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000228078.1 HLA-U -545547 0.000175609 0.467765 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204644.9 ZFP57 -292556 1.1e-18 1.03586 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204655.11 MOG -268427 0.000135246 0.45024 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204616.10 TRIM31 -724552 2.13e-07 -0.438965 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000235821.1 IFITM4P -362594 3.47e-05 -0.420077 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204632.11 HLA-G -438413 1.82e-07 -0.588767 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000204622.11 HLA-J -617417 2.88e-08 -0.612848 3e-08 breast cancer 6_29388554 rs9257809 ENSG00000206341.7 HLA-H -499913 0.00042315 -0.4012 3e-08 breast cancer 6_29509637 rs1233480 ENSG00000204632.11 HLA-G -317330 8.99e-07 -0.467902 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204616.10 TRIM31 -603469 2.73e-06 -0.335298 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204644.9 ZFP57 -171473 1.65e-10 0.644947 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204713.10 TRIM27 585648 9.27e-08 -0.306412 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204622.11 HLA-J -496334 2.37e-07 -0.481973 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000206503.12 HLA-A -431623 1.61e-07 -0.276762 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000204657.3 OR2H2 -77818 0.000174694 0.334102 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000235821.1 IFITM4P -241511 9.73e-05 -0.333477 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000281831.1 HCP5B -364146 1.22e-09 0.5671 5e-08 breast cancer 6_29509637 rs1233480 ENSG00000230795.3 HLA-K -417541 6.12e-06 -0.442817 5e-08 breast cancer 6_29693039 rs3116813 ENSG00000230795.3 HLA-K -234139 6.54e-14 -0.839023 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000228078.1 HLA-U -241062 5.42e-05 0.493675 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000239257.1 RPL23AP1 -33843 0.00014997 0.390546 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204616.10 TRIM31 -420067 7e-09 -0.479502 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000206503.12 HLA-A -248221 6.25e-11 -0.399151 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204655.11 MOG 36058 7.26e-05 0.459361 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204622.11 HLA-J -312932 8.04e-10 -0.663925 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000281831.1 HCP5B -180744 1.23e-11 0.733521 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000231130.1 HLA-T -203615 5.72e-06 -0.530664 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204713.10 TRIM27 769050 1.29e-09 -0.404059 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204644.9 ZFP57 11929 3.61e-21 1.08203 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000235821.1 IFITM4P -58109 3.79e-06 -0.459524 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000176998.4 HCG4 -99397 3.5e-06 -0.499627 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000066379.14 POLR1H -368602 6.68e-05 -0.227447 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204657.3 OR2H2 105584 6.04e-05 0.415786 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000227262.3 HCG4B -233934 4.01e-05 -0.4648 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000204632.11 HLA-G -133928 4.6e-09 -0.647089 6e-07 breast cancer 6_29693039 rs3116813 ENSG00000214922.9 HLA-F-AS1 -55954 0.000383675 0.280115 6e-07 breast cancer 6_29785031 rs147680653 ENSG00000176998.4 HCG4 -7405 2.54e-06 -0.505717 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000066379.14 POLR1H -276610 5.75e-05 -0.22905 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000228078.1 HLA-U -149070 6.48e-05 0.487841 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000206503.12 HLA-A -156229 1.08e-10 -0.393735 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000239257.1 RPL23AP1 58149 0.000164173 0.387621 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000227262.3 HCG4B -141942 5.95e-05 -0.453837 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204655.11 MOG 128050 7.9e-05 0.456338 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000235821.1 IFITM4P 33883 5.5e-06 -0.45124 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000231130.1 HLA-T -111623 2.66e-06 -0.547885 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204657.3 OR2H2 197576 2.77e-05 0.433395 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204622.11 HLA-J -220940 8.47e-10 -0.661991 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204632.11 HLA-G -41936 5.75e-09 -0.642058 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204616.10 TRIM31 -328075 1.07e-08 -0.473026 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000230795.3 HLA-K -142147 7.14e-14 -0.836422 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000214922.9 HLA-F-AS1 36038 0.000231642 0.289792 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000206341.7 HLA-H -103436 0.000454118 -0.391319 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204713.10 TRIM27 861042 3.21e-09 -0.39391 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000281831.1 HCP5B -88752 8.35e-12 0.73797 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000204644.9 ZFP57 103921 9.75e-22 1.09431 1e-06 breast cancer 6_29785031 rs147680653 ENSG00000137312.14 FLOT1 -957702 4.03e-06 0.151433 1e-06 breast cancer 6_29882943 rs1611579 ENSG00000204622.11 HLA-J -123028 6.09e-10 -0.64405 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000281831.1 HCP5B 9160 1.16e-13 0.770001 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000237923.1 LINC02570 -965216 6.78e-06 0.454819 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204655.11 MOG 225962 0.000219496 0.412713 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204616.10 TRIM31 -230163 2.26e-09 -0.476322 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000239257.1 RPL23AP1 156061 6.65e-05 0.395539 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000206341.7 HLA-H -5524 0.00013915 -0.409792 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000066379.14 POLR1H -178698 0.000118088 -0.211719 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000214922.9 HLA-F-AS1 133950 0.000439885 0.26717 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000176998.4 HCG4 90507 3.26e-07 -0.528642 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204657.3 OR2H2 295488 4.15e-05 0.409214 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204632.11 HLA-G 55976 7.39e-10 -0.653684 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204713.10 TRIM27 958954 9.41e-08 -0.343967 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000206503.12 HLA-A -58317 6.1e-13 -0.421307 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000204644.9 ZFP57 201833 9.07e-21 1.03282 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000137312.14 FLOT1 -859790 4.9e-05 0.129064 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000231130.1 HLA-T -13711 1.6e-06 -0.540029 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000230795.3 HLA-K -44235 2.25e-15 -0.851638 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000228078.1 HLA-U -51158 0.000163477 0.444701 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000235821.1 IFITM4P 131795 6.57e-06 -0.431944 8e-07 breast cancer 6_29882943 rs1611579 ENSG00000227262.3 HCG4B -44030 1.37e-05 -0.473663 8e-07 breast cancer 6_30003183 rs3094146 ENSG00000204657.3 OR2H2 415728 0.000132597 0.383073 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000281831.1 HCP5B 129400 1.81e-13 0.766382 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000066379.14 POLR1H -58458 0.00015231 -0.208917 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000206503.12 HLA-A 61923 2.01e-12 -0.413399 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204616.10 TRIM31 -109923 3.48e-09 -0.47225 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204644.9 ZFP57 322073 4.93e-20 1.01758 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000237923.1 LINC02570 -844976 1.05e-05 0.446724 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000235821.1 IFITM4P 252035 1.21e-05 -0.420866 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000176998.4 HCG4 210747 3.94e-07 -0.526523 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000231130.1 HLA-T 106529 1.48e-05 -0.490017 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000206341.7 HLA-H 114716 0.000113695 -0.416231 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204632.11 HLA-G 176216 4.16e-09 -0.626943 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000137312.14 FLOT1 -739550 4.14e-05 0.130663 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000230795.3 HLA-K 76005 6.21e-14 -0.811356 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000239257.1 RPL23AP1 276301 5.88e-05 0.399508 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000214922.9 HLA-F-AS1 254190 0.000491391 0.265713 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000204622.11 HLA-J -2788 2.7e-09 -0.621942 7e-07 breast cancer 6_30003183 rs3094146 ENSG00000227262.3 HCG4B 76210 2.16e-05 -0.464215 7e-07 breast cancer 6_30107326 rs2523992 ENSG00000230795.3 HLA-K 180148 1.17e-09 -0.518542 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000231130.1 HLA-T 210672 0.000290659 -0.320722 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000228078.1 HLA-U 173225 0.00030356 0.333497 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204657.3 OR2H2 519871 6.38e-05 0.312319 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000206503.12 HLA-A 166066 1.42e-07 -0.244161 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000281831.1 HCP5B 233543 1.35e-07 0.434245 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204623.9 ZNRD1ASP 46073 1.18e-08 -0.18444 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000137312.14 FLOT1 -635407 0.00012202 0.0956102 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000204644.9 ZFP57 426216 2.21e-05 0.380904 2e-07 breast cancer 6_30107326 rs2523992 ENSG00000176998.4 HCG4 314890 1.32e-10 -0.515725 2e-07 breast cancer 6_30365728 rs3094054 ENSG00000239257.1 RPL23AP1 638846 0.000247705 0.364131 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204592.8 HLA-E -123739 0.000179123 0.19305 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000206341.7 HLA-H 477261 0.000367442 -0.383819 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204525.16 HLA-C -906377 0.00020129 0.31071 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000230795.3 HLA-K 438550 1.07e-12 -0.770617 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000237923.1 LINC02570 -482431 7.2e-08 0.542035 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000206503.12 HLA-A 424468 1.12e-08 -0.338091 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204632.11 HLA-G 538761 5.87e-09 -0.619663 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000137411.16 VARS2 -548477 6.88e-05 -0.320672 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000281831.1 HCP5B 491945 2e-09 0.629263 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204644.9 ZFP57 684618 3.54e-15 0.882351 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204622.11 HLA-J 359757 7.49e-07 -0.519274 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000066379.14 POLR1H 304087 0.00023439 -0.202566 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000277402.1 MIR6891 -989588 2.55e-05 -0.407699 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204536.13 CCHCR1 -792510 0.000135181 0.26596 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000137312.14 FLOT1 -377005 8.82e-06 0.141104 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000176998.4 HCG4 573292 1.15e-05 -0.456078 1e-07 breast cancer 6_30365728 rs3094054 ENSG00000204616.10 TRIM31 252622 6.67e-06 -0.362187 1e-07 breast cancer 6_30374976 rs115707823 ENSG00000204616.10 TRIM31 261870 3.87e-05 -0.294748 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000206503.12 HLA-A 433716 3.03e-06 -0.247159 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000237923.1 LINC02570 -473183 2.54e-07 0.461838 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 4.91e-11 0.662007 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000176998.4 HCG4 582540 0.000152889 -0.350897 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000066379.14 POLR1H 313335 0.000395888 -0.173535 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 6.08e-08 -0.52731 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000137411.16 VARS2 -539229 6.94e-05 -0.284955 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 6.67e-05 -0.373852 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 2.49e-08 0.521351 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204632.11 HLA-G 548009 0.00018511 -0.357786 2e-06 breast cancer 6_30374976 rs115707823 ENSG00000204616.10 TRIM31 261870 3.87e-05 -0.294748 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000206503.12 HLA-A 433716 3.03e-06 -0.247159 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000237923.1 LINC02570 -473183 2.54e-07 0.461838 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204644.9 ZFP57 693866 4.91e-11 0.662007 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000176998.4 HCG4 582540 0.000152889 -0.350897 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000066379.14 POLR1H 313335 0.000395888 -0.173535 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000230795.3 HLA-K 447798 6.08e-08 -0.52731 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000137411.16 VARS2 -539229 6.94e-05 -0.284955 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204622.11 HLA-J 369005 6.67e-05 -0.373852 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000281831.1 HCP5B 501193 2.49e-08 0.521351 5e-07 breast cancer 6_30374976 rs115707823 ENSG00000204632.11 HLA-G 548009 0.00018511 -0.357786 5e-07 breast cancer 6_30473526 rs3132615 ENSG00000204632.11 HLA-G 646559 2.65e-07 -0.527396 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204622.11 HLA-J 467555 7.81e-06 -0.450802 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204644.9 ZFP57 792416 4.34e-12 0.749965 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000230795.3 HLA-K 546348 1.25e-10 -0.670732 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000206503.12 HLA-A 532266 3.59e-07 -0.289827 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000137411.16 VARS2 -440679 1.16e-05 -0.337983 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204616.10 TRIM31 360420 6.82e-05 -0.30771 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000204536.13 CCHCR1 -684712 6.87e-05 0.265681 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000281831.1 HCP5B 599743 3.46e-07 0.515393 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000277402.1 MIR6891 -881790 6.4e-06 -0.418242 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000137312.14 FLOT1 -269207 2.29e-06 0.143609 2e-06 breast cancer 6_30473526 rs3132615 ENSG00000237923.1 LINC02570 -374633 2.14e-09 0.575296 2e-06 breast cancer 6_30576624 rs3132610 ENSG00000176998.4 HCG4 784188 0.000221382 -0.382394 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000239257.1 RPL23AP1 849742 0.000373674 0.351176 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204536.13 CCHCR1 -581614 1.26e-05 0.301354 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000230795.3 HLA-K 649446 1e-11 -0.733123 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000235821.1 IFITM4P 825476 0.000129935 -0.365477 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204516.9 MICB -918257 3.08e-09 0.538597 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000277402.1 MIR6891 -778692 3.23e-05 -0.399768 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204616.10 TRIM31 463518 4.15e-06 -0.367368 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137411.16 VARS2 -337581 1.31e-08 -0.450628 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204644.9 ZFP57 895514 1.48e-13 0.825852 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000137312.14 FLOT1 -166109 1.2e-06 0.152742 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000206503.12 HLA-A 635364 1.99e-08 -0.330043 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000214894.6 LINC00243 -254035 0.000103503 0.431575 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204632.11 HLA-G 749657 4.9e-08 -0.577939 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000281831.1 HCP5B 702841 1.78e-07 0.546536 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000214922.9 HLA-F-AS1 827631 0.000430252 0.265871 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000237923.1 LINC02570 -271535 3.7e-10 0.622565 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000206341.7 HLA-H 688157 0.000126389 -0.40962 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204525.16 HLA-C -695481 0.000338631 0.297577 1e-06 breast cancer 6_30576624 rs3132610 ENSG00000204622.11 HLA-J 570653 9.73e-06 -0.462127 1e-06 breast cancer 6_30682249 rs9262142 ENSG00000230795.3 HLA-K 755071 3.49e-11 -0.705454 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000239257.1 RPL23AP1 955367 0.000535309 0.337575 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204525.16 HLA-C -589856 0.000192597 0.305525 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000214894.6 LINC00243 -148410 5.32e-05 0.443272 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000277402.1 MIR6891 -673067 4.76e-05 -0.386369 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137312.14 FLOT1 -60484 1.05e-06 0.151628 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204632.11 HLA-G 855282 1.15e-08 -0.596085 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000206503.12 HLA-A 740989 2.39e-08 -0.32412 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204536.13 CCHCR1 -475989 9.53e-06 0.301628 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204516.9 MICB -812632 2.04e-09 0.537635 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204616.10 TRIM31 569143 3.66e-06 -0.364773 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000214922.9 HLA-F-AS1 933256 0.000517079 0.258922 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000206341.7 HLA-H 793782 4.15e-05 -0.431993 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000237923.1 LINC02570 -165910 1.34e-09 0.595564 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000204622.11 HLA-J 676278 6.94e-06 -0.46364 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000281831.1 HCP5B 808466 9.15e-07 0.508298 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000137411.16 VARS2 -231956 8.48e-09 -0.450506 3e-06 breast cancer 6_30682249 rs9262142 ENSG00000176998.4 HCG4 889813 0.000477726 -0.357394 3e-06 breast cancer 6_30793795 rs3129984 ENSG00000230795.3 HLA-K 866617 4.01e-11 -0.69001 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137312.14 FLOT1 51062 2.84e-07 0.156189 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000214894.6 LINC00243 -36864 0.000237986 0.396064 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000281831.1 HCP5B 920012 1.71e-06 0.486332 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204516.9 MICB -701086 7.46e-10 0.541042 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000237923.1 LINC02570 -54364 2.15e-10 0.610777 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000277402.1 MIR6891 -561521 3.59e-05 -0.384979 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204525.16 HLA-C -478310 0.000100221 0.312485 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204616.10 TRIM31 680689 1.63e-06 -0.370234 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000206341.7 HLA-H 905328 2.85e-05 -0.4325 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000137411.16 VARS2 -120410 4.03e-10 -0.478288 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204622.11 HLA-J 787824 4.12e-06 -0.465655 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204536.13 CCHCR1 -364443 1.63e-06 0.319812 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000204632.11 HLA-G 966828 1.93e-09 -0.613974 8e-06 breast cancer 6_30793795 rs3129984 ENSG00000206503.12 HLA-A 852535 6.91e-08 -0.307632 8e-06 breast cancer 6_31347004 rs115392158 ENSG00000231852.6 CYP21A2 -691261 2.46e-09 0.426742 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204516.9 MICB -147877 3.35e-06 0.284376 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204528.3 PSORS1C3 169105 7.67e-07 -0.365196 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 5.9e-09 -0.398493 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 3.01e-08 -0.353428 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000224389.8 C4B -667758 1.19e-08 0.378898 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 6.52e-08 -0.40427 3e-07 breast cancer 6_31347004 rs115392158 ENSG00000231852.6 CYP21A2 -691261 2.46e-09 0.426742 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204516.9 MICB -147877 3.35e-06 0.284376 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204528.3 PSORS1C3 169105 7.67e-07 -0.365196 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000244731.7 C4A -635020 5.9e-09 -0.398493 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000277402.1 MIR6891 -8312 3.01e-08 -0.353428 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000224389.8 C4B -667758 1.19e-08 0.378898 9e-06 breast cancer 6_31347004 rs115392158 ENSG00000204338.8 CYP21A1P -658685 6.52e-08 -0.40427 9e-06 breast cancer 6_32699696 rs147527678 ENSG00000223534.1 HLA-DQB1-AS1 39341 3.86e-16 -0.417104 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000224389.8 C4B 684934 2.86e-07 0.358935 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 8.2e-14 -0.529742 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 3.46e-05 0.185179 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 1.94e-16 0.606387 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000198502.5 HLA-DRB5 169409 3.03e-10 -0.438633 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 1.76e-26 -0.668044 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 1.86e-13 -0.569365 5e-07 breast cancer 6_32699696 rs147527678 ENSG00000223534.1 HLA-DQB1-AS1 39341 3.86e-16 -0.417104 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000224389.8 C4B 684934 2.86e-07 0.358935 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000244731.7 C4A 717672 8.2e-14 -0.529742 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204257.14 HLA-DMA -269398 3.46e-05 0.185179 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000231852.6 CYP21A2 661431 1.94e-16 0.606387 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000198502.5 HLA-DRB5 169409 3.03e-10 -0.438633 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000179344.16 HLA-DQB1 31313 1.76e-26 -0.668044 6e-08 breast cancer 6_32699696 rs147527678 ENSG00000204338.8 CYP21A1P 694007 1.86e-13 -0.569365 6e-08 breast cancer 6_33272092 rs17215231 ENSG00000231500.6 RPS18 44 5.99e-83 -0.847691 9e-13 breast cancer 6_43259403 rs111342015 ENSG00000112667.12 DNPH1 29919 1.05e-20 -0.38875 9e-08 breast cancer 6_43259403 rs111342015 ENSG00000112655.15 PTK7 183135 9.1e-05 0.206978 9e-08 breast cancer 6_80496839 rs9449003 ENSG00000219361.1 RPSAP72 26411 0.000271403 0.19586 3e-06 breast cancer 6_81418669 rs17529111 ENSG00000112773.15 TENT5A -334105 0.000193185 -0.17759 3e-10 breast cancer 6_81418669 rs17529111 ENSG00000112773.15 TENT5A -334105 0.000193185 -0.17759 5e-07 breast cancer 6_81418669 rs17529111 ENSG00000112773.15 TENT5A -334105 0.000193185 -0.17759 2e-06 breast cancer 6_81418669 rs17529111 ENSG00000112773.15 TENT5A -334105 0.000193185 -0.17759 2e-10 breast cancer 6_81418669 rs17529111 ENSG00000112773.15 TENT5A -334105 0.000193185 -0.17759 1e-09 breast cancer 6_81483392 rs17530068 ENSG00000112773.15 TENT5A -269382 3.46e-05 -0.190977 3e-07 breast cancer 6_81483392 rs17530068 ENSG00000112773.15 TENT5A -269382 3.46e-05 -0.190977 3e-06 breast cancer 6_81483392 rs17530068 ENSG00000112773.15 TENT5A -269382 3.46e-05 -0.190977 8e-09 breast cancer 6_81545215 rs9361840 ENSG00000112773.15 TENT5A -207559 2.91e-05 -0.188719 8e-08 breast cancer 6_81545215 rs9361840 ENSG00000112773.15 TENT5A -207559 2.91e-05 -0.188719 7e-14 breast cancer 6_81677422 rs6912005 ENSG00000112773.15 TENT5A -75352 3.81e-06 -0.200487 2e-11 breast cancer 7_100437651 rs117911427 ENSG00000242294.6 STAG3L5P 101239 9.76e-14 0.922965 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000106336.12 FBXO24 -146331 9.82e-05 0.596175 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000121716.20 PILRB 85475 8.57e-14 0.899179 7e-06 breast cancer 7_100437651 rs117911427 ENSG00000085514.15 PILRA 64206 2e-09 1.07361 7e-06 breast cancer 7_102478605 rs369574511 ENSG00000161036.12 LRWD1 13676 3.09e-17 -0.26584 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000105808.17 RASA4 -138152 8.05e-13 0.394462 2e-07 breast cancer 7_102478605 rs369574511 ENSG00000260097.2 SPDYE6 122161 1.12e-06 0.271915 2e-07 breast cancer 7_103251337 rs6946892 ENSG00000228049.7 POLR2J2 579708 0.000166266 0.229725 1e-07 breast cancer 7_140242504 rs11977670 ENSG00000006459.10 KDM7A 65469 3.17e-05 0.0873014 1e-16 breast cancer 7_140242504 rs11977670 ENSG00000260231.1 KDM7A-DT 65243 8.6e-05 0.128452 1e-16 breast cancer 7_140242504 rs11977670 ENSG00000006459.10 KDM7A 65469 3.17e-05 0.0873014 1e-19 breast cancer 7_140242504 rs11977670 ENSG00000260231.1 KDM7A-DT 65243 8.6e-05 0.128452 1e-19 breast cancer 7_140242504 rs11977670 ENSG00000006459.10 KDM7A 65469 3.17e-05 0.0873014 4e-08 breast cancer 7_140242504 rs11977670 ENSG00000260231.1 KDM7A-DT 65243 8.6e-05 0.128452 4e-08 breast cancer 7_144351809 rs62485509 ENSG00000271079.1 CTAGE15 780008 1.45e-06 -0.375922 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000228960.5 OR2A9P 57329 5.14e-09 -0.422136 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000244198.5 ARHGEF35-AS1 156951 7.81e-06 -0.356471 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000243896.3 OR2A7 92087 0.000175309 -0.265406 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000204959.4 ARHGEF34P 64843 3.78e-28 -0.647893 4e-12 breast cancer 7_144351809 rs62485509 ENSG00000170356.8 OR2A20P 98852 4.63e-08 0.428014 4e-12 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 4e-10 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 4e-10 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 4e-10 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 4e-10 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 4e-10 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 7e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 7e-11 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 7e-11 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 7e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 7e-11 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 7e-12 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 7e-12 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 7e-12 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 7e-12 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 7e-12 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 2e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 2e-11 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 2e-11 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 2e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 2e-11 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 1e-08 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 1e-08 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 1e-08 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 1e-08 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 1e-08 breast cancer 7_144377836 rs720475 ENSG00000228960.5 OR2A9P 83356 5.91e-06 -0.286464 1e-11 breast cancer 7_144377836 rs720475 ENSG00000204959.4 ARHGEF34P 90870 3.01e-30 -0.581729 1e-11 breast cancer 7_144377836 rs720475 ENSG00000271079.1 CTAGE15 806035 0.000114856 -0.262655 1e-11 breast cancer 7_144377836 rs720475 ENSG00000244198.5 ARHGEF35-AS1 182978 2.15e-05 -0.294673 1e-11 breast cancer 7_144377836 rs720475 ENSG00000170356.8 OR2A20P 124879 1.29e-06 0.330536 1e-11 breast cancer 7_144477198 rs13230714 ENSG00000204959.4 ARHGEF34P 190232 1.32e-17 -0.423932 1e-06 breast cancer 7_144477198 rs13230714 ENSG00000271079.1 CTAGE15 905397 1.57e-05 -0.277442 1e-06 breast cancer 7_74696373 rs74910854 ENSG00000277072.4 STAG3L2 -194237 1.8e-09 0.369069 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000158517.13 NCF1 -77589 0.000125386 0.333858 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000123965.13 PMS2P5 -197743 7.97e-15 0.781233 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000196275.13 GTF2IRD2 -155178 6.7e-34 0.856144 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000277053.4 GTF2IP1 -541323 3.34e-22 -0.825937 5e-06 breast cancer 7_74696373 rs74910854 ENSG00000263001.5 GTF2I 38706 1.54e-25 0.423183 5e-06 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.26e-05 -0.13366 9e-11 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.26e-05 -0.13366 1e-06 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.26e-05 -0.13366 5e-07 breast cancer 7_92001306 rs6964587 ENSG00000001630.15 CYP51A1 -141646 3.26e-05 -0.13366 3e-12 breast cancer 8_103189173 rs12548629 ENSG00000247081.7 BAALC-AS1 -109599 1.15e-06 0.229049 3e-07 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.21e-06 0.280383 1e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.21e-06 0.280383 3e-08 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.21e-06 0.280383 6e-09 breast cancer 8_220692 rs66823261 ENSG00000223508.5 RPL23AP53 -11444 1.21e-06 0.280383 3e-07 breast cancer 8_22634616 rs6558174 ENSG00000158941.16 CCAR2 29984 4.42e-06 0.0828186 3e-06 breast cancer 9_103912867 rs718857 ENSG00000136824.18 SMC2 -181393 1.1e-14 -0.188791 2e-06 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 1.17e-24 -0.242706 2e-07 breast cancer 9_104094512 rs4742903 ENSG00000136824.18 SMC2 252 1.17e-24 -0.242706 3e-08 breast cancer 9_133463535 rs3124765 ENSG00000148290.9 SURF1 106859 4.04e-09 0.278038 2e-06