DISEASE	CHR_POS	SNPS	ENSEMBLE_ID	GENE_NAME	TSS_DISTANCE	GTEx_PVALUE	GTEx_SLOPE	GWAS_PVALUE
rheumatoid arthritis	1_17328912	rs1748041	ENSG00000159339.13	PADI4	20717	7.85e-09	0.650448	2e-09
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	9e-13
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	5e-21
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	6e-09
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	4e-26
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	6e-09
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	1e-18
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	6e-19
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	2.32e-35	1.08026	8e-13
rheumatoid arthritis	1_17347613	rs2240339	ENSG00000159339.13	PADI4	39418	1.66e-36	1.05816	1e-10
rheumatoid arthritis	1_17347613	rs2240339	ENSG00000159339.13	PADI4	39418	1.66e-36	1.05816	3e-10
rheumatoid arthritis	1_17347907	rs2240336	ENSG00000159339.13	PADI4	39712	2.67e-39	1.05136	4e-08
rheumatoid arthritis	1_17347907	rs2240336	ENSG00000159339.13	PADI4	39712	2.67e-39	1.05136	6e-09
rheumatoid arthritis	1_17348042	rs2240335	ENSG00000159339.13	PADI4	39847	6.94e-36	1.05247	2e-08
rheumatoid arthritis	1_17348042	rs2240335	ENSG00000159339.13	PADI4	39847	6.94e-36	1.05247	2e-08
rheumatoid arthritis	1_19845021	rs10737481	ENSG00000169914.5	OTUD3	-37492	3.65e-05	-0.252658	3e-19
rheumatoid arthritis	1_37812907	rs28411352	ENSG00000204084.12	INPP5B	-134150	1.07e-08	0.364887	6e-09
rheumatoid arthritis	1_37812907	rs28411352	ENSG00000204084.12	INPP5B	-134150	1.07e-08	0.364887	2e-11
rheumatoid arthritis	1_37812907	rs28411352	ENSG00000204084.12	INPP5B	-134150	1.07e-08	0.364887	5e-09
rheumatoid arthritis	1_37812907	rs28411352	ENSG00000204084.12	INPP5B	-134150	1.07e-08	0.364887	6e-12
rheumatoid arthritis	1_37812907	rs28411352	ENSG00000204084.12	INPP5B	-134150	1.07e-08	0.364887	3e-12
rheumatoid arthritis	10_62277122	rs6479800	ENSG00000182010.10	RTKN2	8415	1.03e-05	0.250003	4e-06
rheumatoid arthritis	10_62277122	rs6479800	ENSG00000182010.10	RTKN2	8415	1.03e-05	0.250003	8e-08
rheumatoid arthritis	10_62277122	rs6479800	ENSG00000182010.10	RTKN2	8415	1.03e-05	0.250003	4e-08
rheumatoid arthritis	10_62277122	rs6479800	ENSG00000182010.10	RTKN2	8415	1.03e-05	0.250003	7e-07
rheumatoid arthritis	10_80462422	rs7100689	ENSG00000122359.17	ANXA11	256850	4.49e-06	0.299762	7e-08
rheumatoid arthritis	11_609888	rs12421158	ENSG00000174775.16	HRAS	72601	4.46e-05	-0.203894	4e-06
rheumatoid arthritis	11_61822009	rs28456	ENSG00000149485.18	FADS1	-7309	5.26e-07	-0.235968	4e-06
rheumatoid arthritis	11_61828092	rs968567	ENSG00000134825.15	TMEM258	35456	2.35e-05	0.246071	2e-08
rheumatoid arthritis	11_61828092	rs968567	ENSG00000149485.18	FADS1	-1226	2.99e-05	-0.255797	2e-08
rheumatoid arthritis	11_61828092	rs968567	ENSG00000134825.15	TMEM258	35456	2.35e-05	0.246071	7e-07
rheumatoid arthritis	11_61828092	rs968567	ENSG00000149485.18	FADS1	-1226	2.99e-05	-0.255797	7e-07
rheumatoid arthritis	11_633689	rs7929541	ENSG00000177042.14	TMEM80	-61844	1.99e-10	0.593411	2e-10
rheumatoid arthritis	12_48021974	rs4760609	ENSG00000177981.10	ASB8	-159239	3.33e-14	0.503715	3e-12
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	6.14e-06	-0.249771	9e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	9.75e-33	0.915646	9e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	6.14e-06	-0.249771	2e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	9.75e-33	0.915646	2e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	6.14e-06	-0.249771	1e-09
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	9.75e-33	0.915646	1e-09
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	6.14e-06	-0.249771	1e-10
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	9.75e-33	0.915646	1e-10
rheumatoid arthritis	12_57574932	rs1678542	ENSG00000166888.11	STAT6	442793	6.92e-05	0.23436	1e-07
rheumatoid arthritis	12_57574932	rs1678542	ENSG00000166888.11	STAT6	442793	6.92e-05	0.23436	9e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	1e-12	-0.457579	1e-07
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123297.17	TSFM	-68320	8.87e-09	0.350812	1e-07
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	1e-12	-0.457579	9e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123297.17	TSFM	-68320	8.87e-09	0.350812	9e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	1e-12	-0.457579	7e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123297.17	TSFM	-68320	8.87e-09	0.350812	7e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	1e-12	-0.457579	1e-07
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123297.17	TSFM	-68320	8.87e-09	0.350812	1e-07
rheumatoid arthritis	14_104919812	rs2841269	ENSG00000140104.13	CLBA1	-65963	2.25e-08	0.305202	2e-16
rheumatoid arthritis	14_104924668	rs2841277	ENSG00000140104.13	CLBA1	-61107	5.68e-09	0.318314	2e-14
rheumatoid arthritis	14_54881400	rs3783637	ENSG00000131979.18	GCH1	-21452	2.21e-05	-0.543659	2e-06
rheumatoid arthritis	15_90350436	rs6496667	ENSG00000140575.12	IQGAP1	-37782	2.17e-10	0.31512	1e-06
rheumatoid arthritis	15_90483245	rs8040585	ENSG00000140575.12	IQGAP1	95027	6.25e-08	0.21877	2e-08
rheumatoid arthritis	16_30615295	rs12918327	ENSG00000196118.11	CFAP119	-147415	4.65e-05	-0.261212	3e-08
rheumatoid arthritis	17_39877024	rs1054609	ENSG00000008838.19	MED24	-184191	2.92e-06	-0.266209	6e-07
rheumatoid arthritis	17_39884510	rs2872507	ENSG00000008838.19	MED24	-176705	2.92e-06	-0.266209	3e-09
rheumatoid arthritis	17_39884510	rs2872507	ENSG00000008838.19	MED24	-176705	2.92e-06	-0.266209	9e-07
rheumatoid arthritis	17_39887396	rs12936409	ENSG00000008838.19	MED24	-173819	4.44e-05	-0.238625	4e-07
rheumatoid arthritis	17_39887396	rs12936409	ENSG00000008838.19	MED24	-173819	4.44e-05	-0.238625	1e-10
rheumatoid arthritis	17_39887396	rs12936409	ENSG00000008838.19	MED24	-173819	4.44e-05	-0.238625	7e-07
rheumatoid arthritis	17_39905943	rs2305480	ENSG00000008838.19	MED24	-155272	2.46e-05	-0.250103	4e-09
rheumatoid arthritis	19_10359299	rs12720356	ENSG00000220201.7	ZGLP1	49419	5.37e-06	-0.314103	4e-09
rheumatoid arthritis	2_100056230	rs10209110	ENSG00000144218.18	AFF3	-86509	1.45e-10	0.303508	1e-08
rheumatoid arthritis	2_100056230	rs10209110	ENSG00000144218.18	AFF3	-86509	1.45e-10	0.303508	7e-08
rheumatoid arthritis	2_100142823	rs11123810	ENSG00000144218.18	AFF3	84	3.54e-06	0.237857	7e-12
rheumatoid arthritis	2_100143710	rs11123811	ENSG00000144218.18	AFF3	971	7.16e-08	0.260247	2e-18
rheumatoid arthritis	2_100143710	rs11123811	ENSG00000144218.18	AFF3	971	7.16e-08	0.260247	9e-16
rheumatoid arthritis	2_100147542	rs13415465	ENSG00000144218.18	AFF3	4803	3.54e-06	0.237857	7e-11
rheumatoid arthritis	2_100190052	rs6712515	ENSG00000144218.18	AFF3	47313	8.58e-07	0.244527	3e-11
rheumatoid arthritis	2_100190052	rs6712515	ENSG00000144218.18	AFF3	47313	8.58e-07	0.244527	2e-11
rheumatoid arthritis	2_100190478	rs11676922	ENSG00000144218.18	AFF3	47739	8.58e-07	0.244527	1e-14
rheumatoid arthritis	2_100190478	rs11676922	ENSG00000144218.18	AFF3	47739	8.58e-07	0.244527	2e-08
rheumatoid arthritis	2_100208905	rs9653442	ENSG00000144218.18	AFF3	66166	5.72e-07	0.241784	2e-15
rheumatoid arthritis	2_100208905	rs9653442	ENSG00000144218.18	AFF3	66166	5.72e-07	0.241784	2e-18
rheumatoid arthritis	2_100208905	rs9653442	ENSG00000144218.18	AFF3	66166	5.72e-07	0.241784	4e-12
rheumatoid arthritis	2_100208905	rs9653442	ENSG00000144218.18	AFF3	66166	5.72e-07	0.241784	1e-14
rheumatoid arthritis	2_100219272	rs10865035	ENSG00000144218.18	AFF3	76533	1.25e-06	0.238297	2e-06
rheumatoid arthritis	2_201196097	rs3731714	ENSG00000240344.8	PPIL3	306794	4.11e-08	0.530477	7e-09
rheumatoid arthritis	2_201196097	rs3731714	ENSG00000155749.12	FLACC1	-161301	2.22e-05	-0.448295	7e-09
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	1.66e-05	-0.540531	3e-09
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	1.66e-05	-0.540531	2e-09
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	1.66e-05	-0.540531	3e-07
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	1.66e-05	-0.540531	5e-07
rheumatoid arthritis	20_46105671	rs6032662	ENSG00000101017.13	CD40	-12601	1.32e-05	0.291535	1e-09
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	7.39e-06	0.296547	2e-13
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	7.39e-06	0.296547	1e-16
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	7.39e-06	0.296547	9e-15
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.01e-05	0.289952	2e-07
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.01e-05	0.289952	8e-09
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.01e-05	0.289952	9e-11
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.01e-05	0.289952	3e-09
rheumatoid arthritis	20_46120612	rs4239702	ENSG00000101017.13	CD40	2340	1.78e-05	0.263987	4e-18
rheumatoid arthritis	20_46120612	rs4239702	ENSG00000101017.13	CD40	2340	1.78e-05	0.263987	3e-14
rheumatoid arthritis	20_46120612	rs4239702	ENSG00000101017.13	CD40	2340	1.78e-05	0.263987	4e-14
rheumatoid arthritis	20_46120612	rs4239702	ENSG00000101017.13	CD40	2340	1.78e-05	0.263987	1e-16
rheumatoid arthritis	22_21561877	rs5754100	ENSG00000161180.10	CCDC116	-70839	1.15e-05	-0.544477	9e-09
rheumatoid arthritis	3_49660026	rs9836291	ENSG00000233276.3	GPX1	301426	3.62e-06	-0.240184	6e-06
rheumatoid arthritis	3_49674864	rs11130213	ENSG00000173531.15	MST1	-14634	0.000102831	0.253825	5e-07
rheumatoid arthritis	3_49674864	rs11130213	ENSG00000233276.3	GPX1	316264	4.22e-07	-0.258624	5e-07
rheumatoid arthritis	4_25415622	rs3816587	ENSG00000053900.10	ANAPC4	38409	1.17e-07	-0.35721	9e-06
rheumatoid arthritis	4_971932	rs13101828	ENSG00000145217.13	SLC26A1	-21508	1.34e-08	-0.423072	1e-08
rheumatoid arthritis	5_103268000	rs403214	ENSG00000175749.11	EIF3KP1	235624	6.87e-05	0.484159	4e-10
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	1e-10
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	1e-09
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	9e-08
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	2e-11
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	7e-10
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	5e-10
rheumatoid arthritis	5_103273223	rs2561477	ENSG00000175749.11	EIF3KP1	240847	4.36e-05	0.506691	6e-10
rheumatoid arthritis	5_132461855	rs6894249	ENSG00000197536.11	IRF1-AS1	51219	2.27e-06	-0.322798	1e-14
rheumatoid arthritis	5_150858959	rs147018773	ENSG00000197083.11	ZNF300P1	-87330	6.3e-13	0.973207	2e-09
rheumatoid arthritis	5_151055333	rs6579837	ENSG00000145901.14	TNIP1	-38244	1.34e-05	0.454945	2e-06
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000204525.16	HLA-C	113447	2.3e-07	0.537421	9e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000137411.16	VARS2	471347	2.35e-06	-0.476936	9e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000204338.8	CYP21A1P	-620137	4.34e-10	-0.849654	9e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000204516.9	MICB	-109329	1.42e-05	0.527391	9e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000244731.7	C4A	-596472	1.37e-07	-0.495097	9e-09
rheumatoid arthritis	6_31654829	rs805297	ENSG00000204338.8	CYP21A1P	-350860	3.96e-05	0.432369	3e-10
rheumatoid arthritis	6_31654829	rs805297	ENSG00000204463.12	BAG6	2124	8.5e-16	0.627709	3e-10
rheumatoid arthritis	6_31654829	rs805297	ENSG00000213676.10	ATF6B	-473424	4.94e-05	0.253159	3e-10
rheumatoid arthritis	6_32315077	rs6910071	ENSG00000229391.7	HLA-DRB6	-244945	5.81e-06	0.439477	1e-299
rheumatoid arthritis	6_32315077	rs6910071	ENSG00000237541.3	HLA-DQA2	-426265	2.21e-06	0.611606	1e-299
rheumatoid arthritis	6_32408196	rs3763309	ENSG00000237541.3	HLA-DQA2	-333146	8.19e-10	0.706816	2e-124
rheumatoid arthritis	6_32408196	rs3763309	ENSG00000229391.7	HLA-DRB6	-151826	7.51e-07	0.435999	2e-124
rheumatoid arthritis	6_32421528	rs9268557	ENSG00000232629.8	HLA-DQB2	-342006	4.59e-05	0.444141	3e-10
rheumatoid arthritis	6_32421528	rs9268557	ENSG00000237541.3	HLA-DQA2	-319814	5.55e-06	0.459663	3e-10
rheumatoid arthritis	6_32446496	rs3129890	ENSG00000244731.7	C4A	464472	4.31e-05	-0.308656	1e-10
rheumatoid arthritis	6_32447303	rs3129891	ENSG00000244731.7	C4A	465279	5.77e-07	-0.39376	2e-09
rheumatoid arthritis	6_32447303	rs3129891	ENSG00000237541.3	HLA-DQA2	-294039	2.88e-05	-0.541354	2e-09
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	2.32e-11	0.485367	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	2.25e-07	0.519069	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	4.48e-08	-0.355356	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000179344.16	HLA-DQB1	-207388	1.86e-06	-0.453682	1e-100
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000229391.7	HLA-DRB6	-83601	2.75e-11	0.487477	5e-58
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000237541.3	HLA-DQA2	-264921	1.47e-07	0.53007	5e-58
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000196126.11	HLA-DRB1	-113427	4.26e-08	-0.358545	5e-58
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000179344.16	HLA-DQB1	-191962	1.3e-06	-0.463325	5e-58
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000229391.7	HLA-DRB6	-73863	6.85e-10	0.472704	6e-227
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000237541.3	HLA-DQA2	-255183	5.09e-06	0.482067	6e-227
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000196126.11	HLA-DRB1	-103689	3.75e-07	-0.346752	6e-227
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000179344.16	HLA-DQB1	-182224	2.57e-05	-0.421417	6e-227
rheumatoid arthritis	6_32533367	rs2157337	ENSG00000198502.5	HLA-DRB5	3080	1.19e-11	-0.584473	9e-52
rheumatoid arthritis	6_32593593	rs35139284	ENSG00000229391.7	HLA-DRB6	33571	8.04e-06	0.381562	4e-287
rheumatoid arthritis	6_32606394	rs615672	ENSG00000198502.5	HLA-DRB5	76107	6.96e-07	-0.456662	8e-27
rheumatoid arthritis	6_32609603	rs660895	ENSG00000229391.7	HLA-DRB6	49581	2.86e-07	0.446011	1e-108
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	7.54e-17	0.898592	1e-108
rheumatoid arthritis	6_32609603	rs660895	ENSG00000229391.7	HLA-DRB6	49581	2.86e-07	0.446011	2e-08
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	7.54e-17	0.898592	2e-08
rheumatoid arthritis	6_32609603	rs660895	ENSG00000229391.7	HLA-DRB6	49581	2.86e-07	0.446011	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	7.54e-17	0.898592	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000229391.7	HLA-DRB6	49581	2.86e-07	0.446011	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	7.54e-17	0.898592	1e-300
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000196126.11	HLA-DRB1	25025	1.47e-05	-0.358569	2e-10
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000229391.7	HLA-DRB6	54851	2.38e-10	0.578866	2e-10
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000237541.3	HLA-DQA2	-126469	7.28e-18	0.99227	2e-10
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000196126.11	HLA-DRB1	25025	1.47e-05	-0.358569	5e-21
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000229391.7	HLA-DRB6	54851	2.38e-10	0.578866	5e-21
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000237541.3	HLA-DQA2	-126469	7.28e-18	0.99227	5e-21
rheumatoid arthritis	6_32615580	rs6931277	ENSG00000237541.3	HLA-DQA2	-125762	7.28e-18	0.99227	2e-10
rheumatoid arthritis	6_32615580	rs6931277	ENSG00000196126.11	HLA-DRB1	25732	1.47e-05	-0.358569	2e-10
rheumatoid arthritis	6_32615580	rs6931277	ENSG00000229391.7	HLA-DRB6	55558	2.38e-10	0.578866	2e-10
rheumatoid arthritis	6_32615965	rs9271348	ENSG00000198502.5	HLA-DRB5	85678	2.98e-12	-0.744974	5e-07
rheumatoid arthritis	6_32629245	rs3129769	ENSG00000237541.3	HLA-DQA2	-112097	7.28e-18	0.99227	3e-11
rheumatoid arthritis	6_32629245	rs3129769	ENSG00000229391.7	HLA-DRB6	69223	2.38e-10	0.578866	3e-11
rheumatoid arthritis	6_32629245	rs3129769	ENSG00000196126.11	HLA-DRB1	39397	1.47e-05	-0.358569	3e-11
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000232629.8	HLA-DQB2	-67460	3.28e-11	0.716638	5e-75
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000196126.11	HLA-DRB1	106226	5.23e-06	-0.312665	5e-75
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000237541.3	HLA-DQA2	-45268	1.04e-10	0.65544	5e-75
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000232629.8	HLA-DQB2	-67460	3.28e-11	0.716638	1e-09
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000196126.11	HLA-DRB1	106226	5.23e-06	-0.312665	1e-09
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000237541.3	HLA-DQA2	-45268	1.04e-10	0.65544	1e-09
rheumatoid arthritis	6_32696222	rs6457620	ENSG00000232629.8	HLA-DQB2	-67312	3.28e-11	0.716638	4e-186
rheumatoid arthritis	6_32696222	rs6457620	ENSG00000237541.3	HLA-DQA2	-45120	1.04e-10	0.65544	4e-186
rheumatoid arthritis	6_32696222	rs6457620	ENSG00000196126.11	HLA-DRB1	106374	5.23e-06	-0.312665	4e-186
rheumatoid arthritis	6_32699330	rs9275334	ENSG00000237541.3	HLA-DQA2	-42012	4.82e-13	1.16354	2e-06
rheumatoid arthritis	6_32699330	rs9275334	ENSG00000229391.7	HLA-DRB6	139308	3.83e-08	0.687871	2e-06
rheumatoid arthritis	6_32703326	rs13192471	ENSG00000232629.8	HLA-DQB2	-60208	3.2e-05	-0.724168	2e-58
rheumatoid arthritis	6_32705797	rs9275495	ENSG00000237541.3	HLA-DQA2	-35545	4.82e-13	1.16354	2e-06
rheumatoid arthritis	6_32705797	rs9275495	ENSG00000229391.7	HLA-DRB6	145775	3.83e-08	0.687871	2e-06
rheumatoid arthritis	6_32707746	rs9275530	ENSG00000237541.3	HLA-DQA2	-33596	4.82e-13	1.16354	2e-06
rheumatoid arthritis	6_32707746	rs9275530	ENSG00000229391.7	HLA-DRB6	147724	3.83e-08	0.687871	2e-06
rheumatoid arthritis	6_32707857	rs9275532	ENSG00000237541.3	HLA-DQA2	-33485	4.82e-13	1.16354	5e-06
rheumatoid arthritis	6_32707857	rs9275532	ENSG00000229391.7	HLA-DRB6	147835	3.83e-08	0.687871	5e-06
rheumatoid arthritis	6_32713151	rs7765379	ENSG00000237541.3	HLA-DQA2	-28191	2.62e-05	0.680283	5e-23
rheumatoid arthritis	6_32713151	rs7765379	ENSG00000232629.8	HLA-DQB2	-50383	3.6e-07	0.867279	5e-23
rheumatoid arthritis	6_32713706	rs7454108	ENSG00000229391.7	HLA-DRB6	153684	3.83e-08	0.687871	2e-06
rheumatoid arthritis	6_32713706	rs7454108	ENSG00000237541.3	HLA-DQA2	-27636	4.82e-13	1.16354	2e-06
rheumatoid arthritis	6_32713753	rs3957146	ENSG00000229391.7	HLA-DRB6	153731	3.83e-08	0.687871	1e-06
rheumatoid arthritis	6_32713753	rs3957146	ENSG00000237541.3	HLA-DQA2	-27589	4.82e-13	1.16354	1e-06
rheumatoid arthritis	6_32714242	rs3998159	ENSG00000229391.7	HLA-DRB6	154220	3.83e-08	0.687871	2e-06
rheumatoid arthritis	6_32714242	rs3998159	ENSG00000237541.3	HLA-DQA2	-27100	4.82e-13	1.16354	2e-06
rheumatoid arthritis	6_44261078	rs28362859	ENSG00000146221.9	TCTE1	-36610	9.35e-07	1.0276	1e-12
rheumatoid arthritis	6_44261078	rs28362859	ENSG00000146221.9	TCTE1	-36610	9.35e-07	1.0276	4e-12
rheumatoid arthritis	8_11502129	rs1600249	ENSG00000254507.2	DEFB131E	-501953	2.04e-06	0.518524	5e-06
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	5.19e-10	-0.648155	3e-09
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	5.19e-10	-0.648155	2e-08
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	5.19e-10	-0.648155	5e-11
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	5.19e-10	-0.648155	4e-09
rheumatoid arthritis	9_120889023	rs2072438	ENSG00000226752.9	CUTALP	64195	4.61e-10	-0.669708	3e-09
rheumatoid arthritis	9_120890620	rs881375	ENSG00000056558.10	TRAF1	-38553	6.01e-12	0.294114	4e-08
rheumatoid arthritis	9_120890620	rs881375	ENSG00000226752.9	CUTALP	65792	7.21e-11	-0.687351	4e-08
rheumatoid arthritis	9_120900340	rs10760126	ENSG00000226752.9	CUTALP	75512	1.57e-10	-0.680764	4e-12
rheumatoid arthritis	9_120905921	rs10435844	ENSG00000056558.10	TRAF1	-23252	5.11e-12	0.294042	1e-10
rheumatoid arthritis	9_120905921	rs10435844	ENSG00000226752.9	CUTALP	81093	1.96e-11	-0.702364	1e-10
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000226752.9	CUTALP	96463	5.48e-10	-0.645756	4e-07
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000226752.9	CUTALP	96463	5.48e-10	-0.645756	2e-08
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000226752.9	CUTALP	103133	2.17e-10	-0.64894	4e-14
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000226752.9	CUTALP	103133	2.17e-10	-0.64894	2e-07
rheumatoid arthritis	9_120933004	rs10739580	ENSG00000226752.9	CUTALP	108176	1.9e-11	-0.707777	2e-06
rheumatoid arthritis	9_120933004	rs10739580	ENSG00000056558.10	TRAF1	3831	9.62e-12	0.292898	2e-06
rheumatoid arthritis	9_120944104	rs2900180	ENSG00000056558.10	TRAF1	14931	9.62e-12	0.292898	6e-09
rheumatoid arthritis	9_120944104	rs2900180	ENSG00000226752.9	CUTALP	119276	1.9e-11	-0.707777	6e-09
rheumatoid arthritis	9_136378050	rs3812565	ENSG00000148384.12	INPP5E	-61773	1.53e-05	-0.247279	2e-09
rheumatoid arthritis	X_153982797	rs13397	ENSG00000177854.7	TMEM187	10470	1.26e-10	-0.440177	1e-12
rheumatoid arthritis	X_153982797	rs13397	ENSG00000177854.7	TMEM187	10470	1.26e-10	-0.440177	3e-12
rheumatoid arthritis	X_154018741	rs1059702	ENSG00000177854.7	TMEM187	46414	1.14e-09	0.432355	5e-10
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	2.8e-10	0.433714	5e-16
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	2.8e-10	0.433714	4e-22
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	2.8e-10	0.433714	3e-12