DISEASE	CHR_POS	SNPS	ENSEMBLE_ID	GENE_NAME	TSS_DISTANCE	GTEx_PVALUE	GTEx_SLOPE	GWAS_PVALUE
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	8e-13
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	4e-26
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	9e-13
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	5e-21
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	1e-18
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	6e-09
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	6e-19
rheumatoid arthritis	1_17346235	rs2301888	ENSG00000159339.13	PADI4	38040	3.79e-11	0.641855	6e-09
rheumatoid arthritis	1_17347613	rs2240339	ENSG00000159339.13	PADI4	39418	4.54e-09	0.578032	3e-10
rheumatoid arthritis	1_17347613	rs2240339	ENSG00000159339.13	PADI4	39418	4.54e-09	0.578032	1e-10
rheumatoid arthritis	1_17347907	rs2240336	ENSG00000159339.13	PADI4	39712	9.08e-08	0.517301	4e-08
rheumatoid arthritis	1_17347907	rs2240336	ENSG00000159339.13	PADI4	39712	9.08e-08	0.517301	6e-09
rheumatoid arthritis	1_17348042	rs2240335	ENSG00000159339.13	PADI4	39847	2.25e-09	0.586515	2e-08
rheumatoid arthritis	1_17348042	rs2240335	ENSG00000159339.13	PADI4	39847	2.25e-09	0.586515	2e-08
rheumatoid arthritis	11_118806377	rs11217037	ENSG00000110367.11	DDX6	15230	1.37e-05	-0.419203	1e-12
rheumatoid arthritis	11_633689	rs7929541	ENSG00000177042.14	TMEM80	-61844	2.51e-10	0.674651	2e-10
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	1.58e-06	-0.369515	2e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	4.62e-23	0.925417	2e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	1.58e-06	-0.369515	1e-09
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	4.62e-23	0.925417	1e-09
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	1.58e-06	-0.369515	1e-10
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	4.62e-23	0.925417	1e-10
rheumatoid arthritis	12_56001170	rs773125	ENSG00000139531.12	SUOX	3990	1.58e-06	-0.369515	9e-08
rheumatoid arthritis	12_56001170	rs773125	ENSG00000197728.9	RPS26	-40683	4.62e-23	0.925417	9e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	5.66e-07	-0.486069	7e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	5.66e-07	-0.486069	9e-08
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	5.66e-07	-0.486069	1e-07
rheumatoid arthritis	12_57714269	rs1633360	ENSG00000123427.16	EEF1AKMT3	-57337	5.66e-07	-0.486069	1e-07
rheumatoid arthritis	15_90350436	rs6496667	ENSG00000140575.12	IQGAP1	-37782	3.96e-07	0.366674	1e-06
rheumatoid arthritis	15_90483245	rs8040585	ENSG00000140575.12	IQGAP1	95027	2.07e-07	0.318078	2e-08
rheumatoid arthritis	19_10359299	rs12720356	ENSG00000220201.7	ZGLP1	49419	1.86e-07	-0.556328	4e-09
rheumatoid arthritis	2_201196097	rs3731714	ENSG00000240344.8	PPIL3	306794	3.08e-06	0.53838	7e-09
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	2.83e-06	-0.680061	3e-07
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	2.83e-06	-0.680061	3e-09
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	2.83e-06	-0.680061	5e-07
rheumatoid arthritis	2_201289674	rs6715284	ENSG00000240344.8	PPIL3	400371	2.83e-06	-0.680061	2e-09
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	1.55e-05	0.378696	1e-16
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	1.55e-05	0.378696	2e-13
rheumatoid arthritis	20_46118343	rs1883832	ENSG00000101017.13	CD40	71	1.55e-05	0.378696	9e-15
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.55e-05	0.378696	3e-09
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.55e-05	0.378696	8e-09
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.55e-05	0.378696	2e-07
rheumatoid arthritis	20_46119308	rs4810485	ENSG00000101017.13	CD40	1036	1.55e-05	0.378696	9e-11
rheumatoid arthritis	3_49660026	rs9836291	ENSG00000173531.15	MST1	-29472	2.47e-05	0.32057	6e-06
rheumatoid arthritis	3_49674864	rs11130213	ENSG00000173531.15	MST1	-14634	7.05e-05	0.294603	5e-07
rheumatoid arthritis	4_25415622	rs3816587	ENSG00000053900.10	ANAPC4	38409	5.15e-07	-0.345042	9e-06
rheumatoid arthritis	5_132461855	rs6894249	ENSG00000197536.11	IRF1-AS1	51219	1.64e-05	-0.331892	1e-14
rheumatoid arthritis	5_150858959	rs147018773	ENSG00000197083.11	ZNF300P1	-87330	3.21e-15	1.41018	2e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000204338.8	CYP21A1P	-620137	4.6e-07	-0.781968	9e-09
rheumatoid arthritis	6_31385552	rs2596565	ENSG00000244731.7	C4A	-596472	2.76e-05	-0.472861	9e-09
rheumatoid arthritis	6_31654829	rs805297	ENSG00000204463.12	BAG6	2124	7.73e-08	0.495689	3e-10
rheumatoid arthritis	6_32408196	rs3763309	ENSG00000237541.3	HLA-DQA2	-333146	1.78e-10	0.829847	2e-124
rheumatoid arthritis	6_32408196	rs3763309	ENSG00000229391.7	HLA-DRB6	-151826	2.22e-05	0.488138	2e-124
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	4e-134
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	1e-100
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	3e-07
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	1e-250
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000196126.11	HLA-DRB1	-128853	1.09e-05	-0.229857	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000229391.7	HLA-DRB6	-99027	8.7e-12	0.588951	2e-145
rheumatoid arthritis	6_32460995	rs9268839	ENSG00000237541.3	HLA-DQA2	-280347	1.51e-06	0.521521	2e-145
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000229391.7	HLA-DRB6	-83601	8.7e-12	0.588951	5e-58
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000237541.3	HLA-DQA2	-264921	1.51e-06	0.521521	5e-58
rheumatoid arthritis	6_32476421	rs12194148	ENSG00000196126.11	HLA-DRB1	-113427	1.09e-05	-0.229857	5e-58
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000196126.11	HLA-DRB1	-103689	1.89e-05	-0.233295	6e-227
rheumatoid arthritis	6_32486159	rs112062732	ENSG00000229391.7	HLA-DRB6	-73863	3.76e-10	0.572186	6e-227
rheumatoid arthritis	6_32533367	rs2157337	ENSG00000198502.5	HLA-DRB5	3080	1.86e-08	-0.507238	9e-52
rheumatoid arthritis	6_32593593	rs35139284	ENSG00000237541.3	HLA-DQA2	-147749	2.86e-05	0.514233	4e-287
rheumatoid arthritis	6_32609603	rs660895	ENSG00000232629.8	HLA-DQB2	-153931	2.06e-06	0.537958	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	4.18e-15	0.878308	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000232629.8	HLA-DQB2	-153931	2.06e-06	0.537958	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	4.18e-15	0.878308	1e-300
rheumatoid arthritis	6_32609603	rs660895	ENSG00000232629.8	HLA-DQB2	-153931	2.06e-06	0.537958	1e-108
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	4.18e-15	0.878308	1e-108
rheumatoid arthritis	6_32609603	rs660895	ENSG00000232629.8	HLA-DQB2	-153931	2.06e-06	0.537958	2e-08
rheumatoid arthritis	6_32609603	rs660895	ENSG00000237541.3	HLA-DQA2	-131739	4.18e-15	0.878308	2e-08
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000229391.7	HLA-DRB6	54851	4.91e-07	0.573767	5e-21
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000237541.3	HLA-DQA2	-126469	8.15e-16	1.00129	5e-21
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000229391.7	HLA-DRB6	54851	4.91e-07	0.573767	2e-10
rheumatoid arthritis	6_32614873	rs3104413	ENSG00000237541.3	HLA-DQA2	-126469	8.15e-16	1.00129	2e-10
rheumatoid arthritis	6_32615580	rs6931277	ENSG00000237541.3	HLA-DQA2	-125762	8.15e-16	1.00129	2e-10
rheumatoid arthritis	6_32615580	rs6931277	ENSG00000229391.7	HLA-DRB6	55558	4.91e-07	0.573767	2e-10
rheumatoid arthritis	6_32615965	rs9271348	ENSG00000198502.5	HLA-DRB5	85678	4.06e-08	-0.6284	5e-07
rheumatoid arthritis	6_32629245	rs3129769	ENSG00000237541.3	HLA-DQA2	-112097	8.15e-16	1.00129	3e-11
rheumatoid arthritis	6_32629245	rs3129769	ENSG00000229391.7	HLA-DRB6	69223	4.91e-07	0.573767	3e-11
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000237541.3	HLA-DQA2	-45268	1.05e-05	0.471569	1e-09
rheumatoid arthritis	6_32696074	rs6457617	ENSG00000237541.3	HLA-DQA2	-45268	1.05e-05	0.471569	5e-75
rheumatoid arthritis	6_32696222	rs6457620	ENSG00000237541.3	HLA-DQA2	-45120	1.05e-05	0.471569	4e-186
rheumatoid arthritis	6_32699330	rs9275334	ENSG00000229391.7	HLA-DRB6	139308	2.93e-05	0.686939	2e-06
rheumatoid arthritis	6_32699330	rs9275334	ENSG00000237541.3	HLA-DQA2	-42012	4.09e-09	1.10664	2e-06
rheumatoid arthritis	6_32705797	rs9275495	ENSG00000229391.7	HLA-DRB6	145775	2.93e-05	0.686939	2e-06
rheumatoid arthritis	6_32705797	rs9275495	ENSG00000237541.3	HLA-DQA2	-35545	4.09e-09	1.10664	2e-06
rheumatoid arthritis	6_32707746	rs9275530	ENSG00000229391.7	HLA-DRB6	147724	2.93e-05	0.686939	2e-06
rheumatoid arthritis	6_32707746	rs9275530	ENSG00000237541.3	HLA-DQA2	-33596	4.09e-09	1.10664	2e-06
rheumatoid arthritis	6_32707857	rs9275532	ENSG00000237541.3	HLA-DQA2	-33485	4.09e-09	1.10664	5e-06
rheumatoid arthritis	6_32707857	rs9275532	ENSG00000229391.7	HLA-DRB6	147835	2.93e-05	0.686939	5e-06
rheumatoid arthritis	6_32713706	rs7454108	ENSG00000237541.3	HLA-DQA2	-27636	4.09e-09	1.10664	2e-06
rheumatoid arthritis	6_32713706	rs7454108	ENSG00000229391.7	HLA-DRB6	153684	2.93e-05	0.686939	2e-06
rheumatoid arthritis	6_32713753	rs3957146	ENSG00000237541.3	HLA-DQA2	-27589	4.09e-09	1.10664	1e-06
rheumatoid arthritis	6_32713753	rs3957146	ENSG00000229391.7	HLA-DRB6	153731	2.93e-05	0.686939	1e-06
rheumatoid arthritis	6_32714242	rs3998159	ENSG00000229391.7	HLA-DRB6	154220	2.93e-05	0.686939	2e-06
rheumatoid arthritis	6_32714242	rs3998159	ENSG00000237541.3	HLA-DQA2	-27100	4.09e-09	1.10664	2e-06
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000056558.10	TRAF1	-55330	2.77e-07	0.383862	5e-11
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	9.94e-06	-0.568261	5e-11
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000056558.10	TRAF1	-55330	2.77e-07	0.383862	3e-09
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	9.94e-06	-0.568261	3e-09
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000056558.10	TRAF1	-55330	2.77e-07	0.383862	2e-08
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	9.94e-06	-0.568261	2e-08
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000056558.10	TRAF1	-55330	2.77e-07	0.383862	4e-09
rheumatoid arthritis	9_120873843	rs10985070	ENSG00000226752.9	CUTALP	49015	9.94e-06	-0.568261	4e-09
rheumatoid arthritis	9_120889023	rs2072438	ENSG00000056558.10	TRAF1	-40150	1.76e-07	0.392006	3e-09
rheumatoid arthritis	9_120889023	rs2072438	ENSG00000226752.9	CUTALP	64195	2.79e-07	-0.654527	3e-09
rheumatoid arthritis	9_120890620	rs881375	ENSG00000226752.9	CUTALP	65792	7.83e-07	-0.605002	4e-08
rheumatoid arthritis	9_120890620	rs881375	ENSG00000056558.10	TRAF1	-38553	9.87e-15	0.516576	4e-08
rheumatoid arthritis	9_120900340	rs10760126	ENSG00000056558.10	TRAF1	-28833	1.76e-07	0.392006	4e-12
rheumatoid arthritis	9_120900340	rs10760126	ENSG00000226752.9	CUTALP	75512	2.79e-07	-0.654527	4e-12
rheumatoid arthritis	9_120905921	rs10435844	ENSG00000056558.10	TRAF1	-23252	9.87e-15	0.516576	1e-10
rheumatoid arthritis	9_120905921	rs10435844	ENSG00000226752.9	CUTALP	81093	7.83e-07	-0.605002	1e-10
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000226752.9	CUTALP	96463	4.45e-06	-0.573703	2e-08
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000056558.10	TRAF1	-7882	5.67e-08	0.392838	2e-08
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000226752.9	CUTALP	96463	4.45e-06	-0.573703	4e-07
rheumatoid arthritis	9_120921291	rs2269060	ENSG00000056558.10	TRAF1	-7882	5.67e-08	0.392838	4e-07
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000056558.10	TRAF1	-1212	1.77e-07	0.380992	2e-07
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000226752.9	CUTALP	103133	2.64e-06	-0.587628	2e-07
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000056558.10	TRAF1	-1212	1.77e-07	0.380992	4e-14
rheumatoid arthritis	9_120927961	rs3761847	ENSG00000226752.9	CUTALP	103133	2.64e-06	-0.587628	4e-14
rheumatoid arthritis	9_120933004	rs10739580	ENSG00000226752.9	CUTALP	108176	4.47e-07	-0.625506	2e-06
rheumatoid arthritis	9_120933004	rs10739580	ENSG00000056558.10	TRAF1	3831	2.56e-14	0.51781	2e-06
rheumatoid arthritis	9_120944104	rs2900180	ENSG00000226752.9	CUTALP	119276	4.47e-07	-0.625506	6e-09
rheumatoid arthritis	9_120944104	rs2900180	ENSG00000056558.10	TRAF1	14931	2.56e-14	0.51781	6e-09
rheumatoid arthritis	X_153982797	rs13397	ENSG00000177854.7	TMEM187	10470	3.07e-05	-0.394809	1e-12
rheumatoid arthritis	X_153982797	rs13397	ENSG00000177854.7	TMEM187	10470	3.07e-05	-0.394809	3e-12
rheumatoid arthritis	X_154018741	rs1059702	ENSG00000177854.7	TMEM187	46414	3.07e-05	0.394809	5e-10
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	3.07e-05	0.394809	3e-12
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	3.07e-05	0.394809	5e-16
rheumatoid arthritis	X_154036016	rs5987194	ENSG00000177854.7	TMEM187	63689	3.07e-05	0.394809	4e-22