Biomarkers name Biomarker Type Source database Information Details Source File
rs2910164 SNP PedAM snpId=rs2910164; pubmedId=21181275; geneId=406938; geneSymbol=MIR146A; diseaseId=umls:C0003873; sourceId=BeFree; sentence=We first investigated the association between the SNPs (rs2910164 G>C and rs3746444 T>C) in the pre-miRNA (hsa-mir-146a and hsa-mir-499) and RA in a Han Chinese population.; score=0.012973128; Year=2011; geneSymbol_dbSNP=LOC285628;MIR146A; CHROMOSOME=5; POS=160485411; REF=C; ALT=G details
rs3027898 SNP PedAM snpId=rs3027898; pubmedId=22451023; geneId=3654; geneSymbol=IRAK1; diseaseId=umls:C0003873; sourceId=BeFree; sentence=IRAK1 rs3027898 C/A polymorphism is associated with risk of rheumatoid arthritis.; score=0.123452799; Year=2013; geneSymbol_dbSNP=IRAK1; CHROMOSOME=X; POS=154010439; REF=C; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=3899; geneSymbol=AFF3; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.129001189; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=26191; geneSymbol=PTPN22; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.524345611; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=3798; geneSymbol=KIF5A; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.254473634; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=6775; geneSymbol=STAT4; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.316739695; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=7185; geneSymbol=TRAF1; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.311201237; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20453842; geneId=1493; geneSymbol=CTLA4; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.; score=0.345272224; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=1493; geneSymbol=CTLA4; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.345272224; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=20498205; geneId=958; geneSymbol=CD40; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Eight markers (ie, rs1160542 (AFF3), rs1678542 (KIF5A), rs2476601 (PTPN22), rs3087243 (CTLA4), rs4810485 (CD40), rs5029937 (6q23), rs10760130 (TRAF1/C5) and rs7574865 (STAT4)) were significantly associated with RA by meta-analysis.; score=0.277186332; Year=2010; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087243 SNP PedAM snpId=rs3087243; pubmedId=24390342; geneId=1493; geneSymbol=CTLA4; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genetics of rheumatoid arthritis contributes to biology and drug discovery.; score=0.345272224; Year=2013; geneSymbol_dbSNP=CTLA4; CHROMOSOME=2; POS=203874196; REF=G; ALT=A details
rs3087456 SNP PedAM snpId=rs3087456; pubmedId=22272574; geneId=49; geneSymbol=ACR; diseaseId=umls:C0003873; sourceId=BeFree; sentence=1302 patients fulfilling the 1987 ACR classification criteria for RA were genotyped for the MHCIITA rs3087456 and rs4774 gene polymorphisms to determine the influence of MHCIITA variants in the development of CV events.; score=0.005700279; Year=2012; geneSymbol_dbSNP=CIITA;LOC105371080; CHROMOSOME=16; POS=10877045; REF=G; ALT=A details
rs3087456 SNP PedAM snpId=rs3087456; pubmedId=16426246; geneId=4261; geneSymbol=CIITA; diseaseId=umls:C0003873; sourceId=BeFree; sentence=We analysed whether the single nucleotide polymorphism (SNP) rs3087456 in the promoter of the MHC class II transactivator (MHC2TA) gene is associated with manifestation of rheumatoid arthritis, multiple sclerosis, narcolepsy and Wegener granulomatosis.; score=0.252539865; Year=2006; geneSymbol_dbSNP=CIITA;LOC105371080; CHROMOSOME=16; POS=10877045; REF=G; ALT=A details
rs3087456 SNP PedAM snpId=rs3087456; pubmedId=19221398; geneId=23274; geneSymbol=CLEC16A; diseaseId=umls:C0003873; sourceId=BeFree; sentence=The effect of the MHC2TA rs3087456G/rs4774C haplotype on RA susceptibility was confirmed, and the haplotype was found to be in negative linkage disequilibrium with the CLEC16A rs2903692A/rs6498169A haplotype.; score=0.00554839; Year=2010; geneSymbol_dbSNP=CIITA;LOC105371080; CHROMOSOME=16; POS=10877045; REF=G; ALT=A details
rs3092920 SNP PedAM snpId=rs3092920; pubmedId=23166616; geneId=49; geneSymbol=ACR; diseaseId=umls:C0003873; sourceId=BeFree; sentence=One thousand five hundred and seventy-five patients fulfilling the 1987 ACR classification criteria for RA and 1600 matched controls were genotyped for the CD40 rs1883832, rs4810485 and rs1535045 and CD154 rs3092952 and rs3092920 gene polymorphisms, using predesigned TaqMan single nucleotide polymorphism genotyping assays.; score=0.005700279; Year=2012; geneSymbol_dbSNP=NA; CHROMOSOME=X; POS=136661832; REF=G; ALT=T details
rs3092952 SNP PedAM snpId=rs3092952; pubmedId=23166616; geneId=49; geneSymbol=ACR; diseaseId=umls:C0003873; sourceId=BeFree; sentence=One thousand five hundred and seventy-five patients fulfilling the 1987 ACR classification criteria for RA and 1600 matched controls were genotyped for the CD40 rs1883832, rs4810485 and rs1535045 and CD154 rs3092952 and rs3092920 gene polymorphisms, using predesigned TaqMan single nucleotide polymorphism genotyping assays.; score=0.005700279; Year=2012; geneSymbol_dbSNP=NA; CHROMOSOME=X; POS=136644791; REF=A; ALT=G details
rs3093023 SNP PedAM snpId=rs3093023; pubmedId=20453842; geneId=1235; geneSymbol=CCR6; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.]; score=0.252539865; Year=2010; geneSymbol_dbSNP=CCR6;LOC105378122; CHROMOSOME=6; POS=167120802; REF=G; ALT=A details
rs3093023 SNP PedAM snpId=rs3093023; pubmedId=23678157; geneId=640; geneSymbol=BLK; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; rs1600249, rs2736340, rs3093023, rs3093024, rs4810485, rs615672, rs660895, and rs9272219) serve as cis-effect regulators of the corresponding eQTL genes (BLK and CD4 in non-HLA region; CCR6, HLA-DQA1, and HLA-DQB1 in HLA region) that also were differentially expressed in RA-related cell groups.; score=0.128458305; Year=2014; geneSymbol_dbSNP=CCR6;LOC105378122; CHROMOSOME=6; POS=167120802; REF=G; ALT=A details
rs3093023 SNP PedAM snpId=rs3093023; pubmedId=24782177; geneId=1235; geneSymbol=CCR6; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Novel risk loci for rheumatoid arthritis in Han Chinese and congruence with risk variants in Europeans.; score=0.252539865; Year=2014; geneSymbol_dbSNP=CCR6;LOC105378122; CHROMOSOME=6; POS=167120802; REF=G; ALT=A details
rs3093023 SNP PedAM snpId=rs3093023; pubmedId=23678157; geneId=3118; geneSymbol=HLA-DQA2; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Among these associations, we found that 8 single-nucleotide polymorphisms (SNP; rs1600249, rs2736340, rs3093023, rs3093024, rs4810485, rs615672, rs660895, and rs9272219) serve as cis-effect regulators of the corresponding eQTL genes (BLK and CD4 in non-HLA region; CCR6, HLA-DQA1, and HLA-DQB1 in HLA region) that also were differentially expressed in RA-related cell groups.; score=0.123452799; Year=2014; geneSymbol_dbSNP=CCR6;LOC105378122; CHROMOSOME=6; POS=167120802; REF=G; ALT=A details