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Biomarkers name Biomarker Type Source database Information Details Source File
rs6859219 SNP PedAM snpId=rs6859219; pubmedId=22130326; geneId=79722; geneSymbol=ANKRD55; diseaseId=umls:C0003873; sourceId=BeFree; sentence=The first SNP, rs6859219, located in ANKRD55 (Chr5), was recently discovered in a meta-analysis of GWAS on rheumatoid arthritis (RA), and emerged from this study with genome-wide significance (odds ratio (OR) = 1.35; P = 2.3 ¡Á 10(-9)).; score=0.245005506; Year=2012; geneSymbol_dbSNP=ANKRD55; CHROMOSOME=5; POS=56142753; REF=C; ALT=A details
rs6859219 SNP PedAM snpId=rs6859219; pubmedId=20453842; geneId=79722; geneSymbol=ANKRD55; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.; score=0.245005506; Year=2010; geneSymbol_dbSNP=ANKRD55; CHROMOSOME=5; POS=56142753; REF=C; ALT=A details
rs6910071 SNP PedAM snpId=rs6910071; pubmedId=20453842; geneId=10665; geneSymbol=C6orf10; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.]; score=0.129468128; Year=2010; geneSymbol_dbSNP=C6orf10;LOC101929163; CHROMOSOME=6; POS=32315077; REF=A; ALT=G details
rs6910071 SNP PedAM snpId=rs6910071; pubmedId=20453842; geneId=10665; geneSymbol=C6orf10; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.; score=0.129468128; Year=2010; geneSymbol_dbSNP=C6orf10;LOC101929163; CHROMOSOME=6; POS=32315077; REF=A; ALT=G details
rs6920220 SNP PedAM snpId=rs6920220; pubmedId=17982456; geneId=167826; geneSymbol=OLIG3; diseaseId=umls:C0003873; sourceId=GAD; sentence=[After evaluating and adjusting for technical and population biases, we identified a SNP at 6q23 (rs10499194, approximately 150 kb from TNFAIP3 and OLIG3) that was reproducibly associated with rheumatoid arthritis both in the genome-wide association (GWA) scan and in 5,541 additional case-control samples (P = 10(-3), GWA scan; P < 10(-6), replication; P = 10(-9), combined).]; score=0.017383549; Year=2007; geneSymbol_dbSNP=NA; CHROMOSOME=6; POS=137685367; REF=G; ALT=A details
rs6920220 SNP PedAM snpId=rs6920220; pubmedId=21120996; geneId=7128; geneSymbol=TNFAIP3; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Conversely, 3 of the 27 SNPs (CCR6 rs3093023, TAGAP rs394581, and TNFAIP3 rs6920220) demonstrated ORs in the opposite direction from those reported for RA patients of European ancestry.; score=0.167568474; Year=2010; geneSymbol_dbSNP=NA; CHROMOSOME=6; POS=137685367; REF=G; ALT=A details
rs6920220 SNP PedAM snpId=rs6920220; pubmedId=19445664; geneId=7128; geneSymbol=TNFAIP3; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Additionally, SNPs rs7574865STAT4 (P = 9.2*10-6; OR = 1.71, 95% CI = 1.35 - 2.18) and rs2476601PTPN22 (P = 9.5*10-4; OR = 1.67, 95% CI = 1.23 - 2.26) were associated with susceptibility to RA, whereas after permutation testing OLIG3/TNFAIP3 SNPs rs10499194 and rs6920220 missed our criteria for significance (Pcorr = 0.114 and Pcorr = 0.180, respectively).]; score=0.167568474; Year=2009; geneSymbol_dbSNP=NA; CHROMOSOME=6; POS=137685367; REF=G; ALT=A details
rs6920220 SNP PedAM snpId=rs6920220; pubmedId=18794853; geneId=167826; geneSymbol=OLIG3; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Common variants at CD40 and other loci confer risk of rheumatoid arthritis.]; score=0.017383549; Year=2008; geneSymbol_dbSNP=NA; CHROMOSOME=6; POS=137685367; REF=G; ALT=A details
rs6920220 SNP PedAM snpId=rs6920220; pubmedId=20453842; geneId=167826; geneSymbol=OLIG3; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.]; score=0.017383549; Year=2010; geneSymbol_dbSNP=NA; CHROMOSOME=6; POS=137685367; REF=G; ALT=A details
rs7021206 SNP PedAM snpId=rs7021206; pubmedId=19714643; geneId=26147; geneSymbol=PHF19; diseaseId=umls:C0003873; sourceId=BeFree; sentence=Our results demonstrate that within and around TRAF1, excluding PHF19 and C5, SNPs highly correlated with rs7021206, but not those correlated with rs3761847, are associated with RA in both Asians and Caucasians and are possibly correlated with causative variations.; score=0.122638474; Year=2009; geneSymbol_dbSNP=TRAF1; CHROMOSOME=9; POS=120921879; REF=G; ALT=A details
rs7021206 SNP PedAM snpId=rs7021206; pubmedId=21492465; geneId=26191; geneSymbol=PTPN22; diseaseId=umls:C0003873; sourceId=BeFree; sentence=We genotyped SNPs rs3761847 and rs7021206 at the TRAF1/C5 locus and rs2476601 SNP in the PTPN22 gene in a Han Chinese cohort composed of 576 patients with RA and 689 controls.; score=0.524345611; Year=2011; geneSymbol_dbSNP=TRAF1; CHROMOSOME=9; POS=120921879; REF=G; ALT=A details
rs7021206 SNP PedAM snpId=rs7021206; pubmedId=19714643; geneId=352963; geneSymbol=HLA-P; diseaseId=umls:C0003873; sourceId=BeFree; sentence=None of the SNPs tested was associated with RA susceptibility, except rs7021206 in TRAF1 intron 3 (P = 0.0032) and, among the SNPs previously reported, rs6457617 in HLA (P = 4.6 x 10(-35)).; score=0.000271442; Year=2009; geneSymbol_dbSNP=TRAF1; CHROMOSOME=9; POS=120921879; REF=G; ALT=A details
rs702873 SNP PedAM snpId=rs702873; pubmedId=22170493; geneId=5966; geneSymbol=REL; diseaseId=umls:C0003873; sourceId=BeFree; sentence=The rs13017599 polymorphism is known to associate with rheumatoid arthritis (RA), and another SNP near REL (rs702873) was recently implicated in PsV susceptibility.; score=0.253192369; Year=2012; geneSymbol_dbSNP=LINC01185; CHROMOSOME=2; POS=60854407; REF=C; ALT=T details
rs7045953 SNP PedAM snpId=rs7045953; pubmedId=20448286; geneId=7099; geneSymbol=TLR4; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Several SNPs mapping to the TLR and NFkappaB signalling systems demonstrated association with anti-TNF response as a whole and, in particular, with response to etanercept. Validation of these findings in an independent cohort is now warranted.]; score=0.027141644; Year=2010; geneSymbol_dbSNP=NA; CHROMOSOME=9; POS=117723517; REF=A; ALT=G details
rs706778 SNP PedAM snpId=rs706778; pubmedId=20453842; geneId=3559; geneSymbol=IL2RA; diseaseId=umls:C0003873; sourceId=GAD; sentence=[We also refined associations at two established rheumatoid arthritis risk loci (IL2RA and CCL21) and confirmed the association at AFF3.]; score=0.256721114; Year=2010; geneSymbol_dbSNP=IL2RA; CHROMOSOME=10; POS=6056986; REF=C; ALT=T details
rs706778 SNP PedAM snpId=rs706778; pubmedId=20453842; geneId=3559; geneSymbol=IL2RA; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=We also refined associations at two established rheumatoid arthritis risk loci (IL2RA and CCL21) and confirmed the association at AFF3.; score=0.256721114; Year=2010; geneSymbol_dbSNP=IL2RA; CHROMOSOME=10; POS=6056986; REF=C; ALT=T details
rs706778 SNP PedAM snpId=rs706778; pubmedId=24390342; geneId=3559; geneSymbol=IL2RA; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genetics of rheumatoid arthritis contributes to biology and drug discovery.; score=0.256721114; Year=2013; geneSymbol_dbSNP=IL2RA; CHROMOSOME=10; POS=6056986; REF=C; ALT=T details
rs7097397 SNP PedAM snpId=rs7097397; pubmedId=24549174; geneId=1401; geneSymbol=CRP; diseaseId=umls:C0003873; sourceId=BeFree; sentence=In stratification analyses, a significantly increased risk for RA associated with the WDFY4 rs7097397 AG genotype was evident among female patients, younger patients, C-reactive protein (CRP) negative patients and both anti-cyclic citrullinated peptide antibody (ACPA) positive patients and negative patients compared with the WDFY4 rs7097397 AA genotype.; score=0.232003854; Year=2014; geneSymbol_dbSNP=WDFY4; CHROMOSOME=10; POS=48817351; REF=G; ALT=A details
rs71508903 SNP PedAM snpId=rs71508903; pubmedId=24390342; geneId=84159; geneSymbol=ARID5B; diseaseId=umls:C0003873; sourceId=GWASCAT; sentence=Genetics of rheumatoid arthritis contributes to biology and drug discovery.; score=0.242909916; Year=2013; geneSymbol_dbSNP=ARID5B; CHROMOSOME=10; POS=62020112; REF=C; ALT=T details
rs7155603 SNP PedAM snpId=rs7155603; pubmedId=20453842; geneId=122953; geneSymbol=JDP2; diseaseId=umls:C0003873; sourceId=GAD; sentence=[Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.]; score=0.002367032; Year=2010; geneSymbol_dbSNP=NA; CHROMOSOME=14; POS=75494193; REF=A; ALT=G details
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